chr12 : 3,490,906 3,491,329
423 bp 104 TFs 2 linked genes
This 423 bp open chromatin element is linked to PRMT8 and THCAT155 and is bound by 104 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
PRMT8 at TSS At TSS Proximity
THCAT155 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:3,485,906 – 3,496,329
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
104 transcription factors
Source
Cell type
AR 3 datasets
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 362 bp overlap
ChIP VCaP GSE83650.AR.VCaP 329 bp overlap
ChIP VCaP GSE98809.AR.VCaP 329 bp overlap
ARID2 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 196 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 83 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-T910M 199 bp overlap
ARNTL 1 dataset
ChIP NSC_hNP1 GSE134972.ARNTL.NSC_hNP1 377 bp overlap
ASH2L 1 dataset
ChIP H1 ENCFF399KAM 138 bp overlap
BCOR 1 dataset
ChIP VCaP_EtOH GSE122572.BCOR.VCaP_EtOH 202 bp overlap
BRD4 9 datasets
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 167 bp overlap
ChIP HCC1395 GSE63581.BRD4.HCC1395 283 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 294 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 271 bp overlap
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 304 bp overlap
ChIP T-47D ERP003925.BRD4.T-47D 392 bp overlap
ChIP hESC GSE33281.BRD4.hESC 79 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 372 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 423 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 273 bp overlap
CHD1 2 datasets
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 140 bp overlap
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 366 bp overlap
CHD2 1 dataset
ChIP WA01 ENCSR000EBT.CHD2.WA01 120 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 227 bp overlap
CTCF 4 datasets
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 127 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 260 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 211 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 211 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 362 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 423 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 148 bp overlap
EHMT2 1 dataset
ChIP Rh41 GSE118666.EHMT2.Rh41 316 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 207 bp overlap
ERG 4 datasets
ChIP AMLPZ12 GSE23730.ERG.AMLPZ12 126 bp overlap
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 377 bp overlap
ChIP VCaP GSE83650.ERG.VCaP 271 bp overlap
ChIP VCaP GSE98809.ERG.VCaP 271 bp overlap
ESR1 5 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 300 bp overlap
ChIP MCF-7_SHCTR_E2_TNF GSE59530.ESR1.MCF-7_SHCTR_E2_TNF 165 bp overlap
ChIP MCF-7_estradiol-aldosterone_45min GSE99626.ESR1.MCF-7_estradiol-aldosterone_45min 283 bp overlap
ChIP MCF-7_estradiol_45min_ChIP-and-reChIP GSE99626.ESR1.MCF-7_estradiol_45min_ChIP-and-reChIP 331 bp overlap
ChIP breast_tumor_Male_21 GSE104399.ESR1.breast_tumor_Male_21 160 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 143 bp overlap
ETV1 1 dataset
ChIP GIST-T1 GSE106624.ETV1.GIST-T1 119 bp overlap
EZH2 29 datasets
ChIP A673 ENCFF790MVL 423 bp overlap
ChIP A673 ENCFF955JRZ 423 bp overlap
ChIP B cell ENCFF803EMO 98 bp overlap
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 180 bp overlap
ChIP H1 ENCFF232NZA 355 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 234 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 88 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 307 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 423 bp overlap
ChIP SK-N-MC ENCFF434OHW 423 bp overlap
ChIP SK-N-MC ENCFF434OHW 213 bp overlap
ChIP T-REx-293_K27WT GSE118954.EZH2.T-REx-293_K27WT 377 bp overlap
ChIP T-REx-293_K27WT_12h GSE118954.EZH2.T-REx-293_K27WT_12h 423 bp overlap
ChIP T-REx-293_K27WT_24h GSE118954.EZH2.T-REx-293_K27WT_24h 373 bp overlap
ChIP T-REx-293_K27WT_6h GSE118954.EZH2.T-REx-293_K27WT_6h 423 bp overlap
ChIP T-REx-293_K27WT_72h GSE118954.EZH2.T-REx-293_K27WT_72h 248 bp overlap
ChIP T98G GSE112240.EZH2.T98G 423 bp overlap
ChIP astrocyte ENCFF365JTP 341 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 303 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 403 bp overlap
ChIP fibroblast of lung ENCFF479BAW 52 bp overlap
ChIP hESC GSE113817.EZH2.hESC 233 bp overlap
ChIP hESC_KO GSE113817.EZH2.hESC_KO 84 bp overlap
ChIP hepatocyte ENCFF552DZB 390 bp overlap
ChIP myotube ENCFF857GWB 146 bp overlap
ChIP neural progenitor cell ENCFF018MKA 217 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 377 bp overlap
ChIP prostate-cancer_HA GSE107780.EZH2.prostate-cancer_HA 205 bp overlap
ChIP prostate-cancer_plko GSE107780.EZH2.prostate-cancer_plko 194 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 385 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 139 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 161 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 290 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 423 bp overlap
GLIS2 2 datasets
ChIP HEK293 ENCFF446EIF 191 bp overlap
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 423 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 412 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 151 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 423 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 267 bp overlap
JARID2 4 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 407 bp overlap
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 411 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 384 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 391 bp overlap
KDM1A 2 datasets
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 299 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 215 bp overlap
KDM4A 6 datasets
ChIP H1 ENCFF078LED 421 bp overlap
ChIP H1 ENCFF078LED 423 bp overlap
ChIP H1 ENCFF078LED 200 bp overlap
ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 329 bp overlap
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 423 bp overlap
ChIP hiPSC_IID12 GSE106870.KDM4A.hiPSC_IID12 406 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 287 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 290 bp overlap
KLF1 2 datasets
ChIP HEK293 ENCFF159QSW 183 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 318 bp overlap
KLF16 1 dataset
ChIP HEK293 ENCSR397DQC.KLF16.HEK293 280 bp overlap
KLF17 1 dataset
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 423 bp overlap
KLF9 1 dataset
ChIP HEK293 ENCSR076EZB.KLF9.HEK293 254 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 133 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 208 bp overlap
ChIP H1 ENCFF914VQY 307 bp overlap
MAZ 2 datasets
ChIP HEK293 ENCFF994GSG 423 bp overlap
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 368 bp overlap
MED1 1 dataset
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 103 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 273 bp overlap
MYC 3 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 197 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 423 bp overlap
ChIP SK-N-SH GSE138295.MYC.SK-N-SH 295 bp overlap
MYC-DAXX 1 dataset
ChIP HEK293_GAL4-DBD GSE107348.MYC-DAXX.HEK293_GAL4-DBD 423 bp overlap
MYCN 5 datasets
ChIP Kelly GSE94782.MYCN.Kelly 287 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 149 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 289 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 382 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 291 bp overlap
MYOCD 1 dataset
ChIP A-549 GSE128921.MYOCD.A-549 418 bp overlap
NANOG 2 datasets
ChIP WA01 ERP004238.NANOG.WA01 359 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 423 bp overlap
NCAPH2 1 dataset
ChIP HEK293 GSE97540.NCAPH2.HEK293 214 bp overlap
NR2F2 1 dataset
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 308 bp overlap
NRF1 1 dataset
ChIP HMEC-1 GSE67867.NRF1.HMEC-1 355 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 423 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 423 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 423 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 423 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 189 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 303 bp overlap
RAD21 2 datasets
ChIP H1 ENCFF698EWO 231 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 423 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 302 bp overlap
REST 14 datasets
ChIP CD4 GSE49570.REST.CD4 238 bp overlap
ChIP GM12878 ENCSR000BGF.REST.GM12878 112 bp overlap
ChIP GM23338 ENCFF024TCL 257 bp overlap
ChIP GM23338 ENCSR871KYB.REST.GM23338 152 bp overlap
ChIP Hep-G2 ENCSR000BJL.REST.Hep-G2 202 bp overlap
ChIP Ishikawa ENCSR000BUU.REST.Ishikawa 158 bp overlap
ChIP K-562 ENCSR000BMW.REST.K-562 116 bp overlap
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 114 bp overlap
ChIP PFSK-1 ENCFF845VHA 60 bp overlap
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 185 bp overlap
ChIP PFSK1 ENCSR000BJP.REST.PFSK1 172 bp overlap
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 113 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 169 bp overlap
ChIP neural ENCSR000BTV.REST.neural 131 bp overlap
RNF2 3 datasets
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 267 bp overlap
ChIP WA01 ENCSR784VUY.RNF2.WA01 264 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 423 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 233 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 412 bp overlap
SIN3A 2 datasets
ChIP WA01 ENCSR000EBO.SIN3A.WA01 176 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 137 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 320 bp overlap
SMARCA4 5 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 191 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 423 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 348 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 412 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 423 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 423 bp overlap
SMARCC1 3 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 336 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 423 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 364 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 154 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 331 bp overlap
SP2 1 dataset
ChIP HEK293 GSE76494.SP2.HEK293 163 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 337 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 423 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 423 bp overlap
SRSF7 1 dataset
ChIP Hep-G2 GSE120104.SRSF7.Hep-G2 216 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 307 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 423 bp overlap
SUZ12 10 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 423 bp overlap
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 379 bp overlap
ChIP HEK293T_PCGF135fl_OHT GSE119618.SUZ12.HEK293T_PCGF135fl_OHT 129 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 210 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 423 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 423 bp overlap
ChIP NT2/D1 ENCFF574SXS 112 bp overlap
ChIP SYO-1_shCt GSE139053.SUZ12.SYO-1_shCt 423 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SUZ12.SYO-1_shRING1A-B 70 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 423 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 147 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 162 bp overlap
TBP 4 datasets
ChIP WA01 ENCSR000ECB.TBP.WA01 135 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 97 bp overlap
ChIP hiPSC_WTa_RNase-neg GSE128135.TBP.hiPSC_WTa_RNase-neg 270 bp overlap
ChIP hiPSC_WTb_RNase-neg GSE128135.TBP.hiPSC_WTb_RNase-neg 178 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 150 bp overlap
TCF7 1 dataset
ChIP breast-organoid_BRCA2-mut GSE113909.TCF7.breast-organoid_BRCA2-mut 358 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 282 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 246 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 423 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 247 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 141 bp overlap
TRIM24 1 dataset
ChIP LNCaP-abl_ETOH GSE69331.TRIM24.LNCaP-abl_ETOH 308 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 423 bp overlap
TRIM28 2 datasets
ChIP AF22 GSE84259.TRIM28.AF22 268 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 312 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 423 bp overlap
YY1 2 datasets
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 97 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 178 bp overlap
ZBTB26 2 datasets
ChIP HEK293 ENCFF752POA 423 bp overlap
ChIP HEK293 ENCFF752TCU 249 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 144 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_CSS GSE123089.ZBTB7A.VCaP_CSS 130 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 296 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 423 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCFF638TIB 283 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 352 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 71 bp overlap
ZNF398 3 datasets
ChIP HEK293 ENCFF184XEW 72 bp overlap
ChIP HEK293 ENCFF184XEW 276 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 423 bp overlap
ZNF560 1 dataset
ChIP HEK293 ENCFF901CEW 229 bp overlap
ZNF76 1 dataset
ChIP HEK293 ENCSR072LQF.ZNF76.HEK293 123 bp overlap