chr9 : 124,482,335 – 124,482,814
479 bp 94 TFs 5 linked genes
This 479 bp open chromatin element is linked to 5 target genes and is bound by 94 transcription factors.
Linked Genes
5 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PSMB7 67.2 kb Distal Multiome
MIR181A2HG 175.8 kb Distal Multiome
NEK6 224.7 kb Distal Multiome
NR6A1 288.6 kb Distal Multiome
OLFML2A 294.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:124,477,335 – 124,487,814
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
94 transcription factors
Source
Cell type
AGO2 2 datasets
ChIP HepG2 ENCFF252VFI 233 bp overlap
ChIP HepG2 ENCFF773YDL 240 bp overlap
AR 2 datasets
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 140 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 198 bp overlap
ARNTL 1 dataset
ChIP NSC_hNP1 GSE134972.ARNTL.NSC_hNP1 208 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 274 bp overlap
BRD4 3 datasets
ChIP MCF-10A ERP003925.BRD4.MCF-10A 246 bp overlap
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 158 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 171 bp overlap
CHD2 1 dataset
ChIP HeLa-S3 ENCSR000ECP.CHD2.HeLa-S3 208 bp overlap
E2F1 1 dataset
ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 140 bp overlap
EGR1 1 dataset
ChIP K562 ENCFF006PJY 242 bp overlap
ESR1 3 datasets
ChIP MCF-7_DHT GSE99626.ESR1.MCF-7_DHT 242 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 211 bp overlap
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 161 bp overlap
EZH2 1 dataset
ChIP SF8628 GSE94834.EZH2.SF8628 163 bp overlap
FOXP1 1 dataset
ChIP K562 ENCFF954SDY 90 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 290 bp overlap
GLIS2 2 datasets
ChIP HEK293 ENCFF446EIF 412 bp overlap
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 315 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 288 bp overlap
GRHL2 2 datasets
Motif DE_12h DE_12h-GRHL2_MA1105.3 8 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 188 bp overlap
GTF2F1 1 dataset
ChIP K-562 GSE120104.GTF2F1.K-562 153 bp overlap
HDAC1 1 dataset
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 378 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR893WSB.HDAC2.K-562 191 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 411 bp overlap
HIC2 2 datasets
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
Motif DE_24h DE_24h-HIC2_MA0738.2 6 bp overlap
HNRNPH1 1 dataset
ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 152 bp overlap
Hic1 2 datasets
Motif DE_12h DE_12h-Hic1_MA0739.2 8 bp overlap
Motif DE_24h DE_24h-Hic1_MA0739.2 8 bp overlap
IRF1 1 dataset
ChIP K-562 ENCSR000EGT.IRF1.K-562 221 bp overlap
IRF7 2 datasets
Motif DE_12h DE_12h-IRF7_MA0772.2 13 bp overlap
Motif DE_24h DE_24h-IRF7_MA0772.2 13 bp overlap
Irf1 2 datasets
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
Motif DE_24h DE_24h-Irf1_MA0050.4 11 bp overlap
JUN 1 dataset
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 199 bp overlap
KDM4A 2 datasets
ChIP WA01 ENCSR000AVC.KDM4A.WA01 274 bp overlap
ChIP hiPSC_IID12 GSE106870.KDM4A.hiPSC_IID12 188 bp overlap
KLF1 2 datasets
Motif DE_24h DE_24h-KLF1_MA0493.3 8 bp overlap
Motif DE_24h DE_24h-KLF1_MA0493.3 8 bp overlap
KLF10 3 datasets
Motif DE_24h DE_24h-KLF10_MA1511.2 9 bp overlap
Motif DE_24h DE_24h-KLF10_MA1511.2 9 bp overlap
Motif DE_24h DE_24h-KLF10_MA1511.2 9 bp overlap
KLF11 2 datasets
Motif DE_24h DE_24h-KLF11_MA1512.2 10 bp overlap
Motif DE_24h DE_24h-KLF11_MA1512.2 10 bp overlap
KLF12 2 datasets
Motif DE_24h DE_24h-KLF12_MA0742.2 9 bp overlap
Motif DE_24h DE_24h-KLF12_MA0742.2 9 bp overlap
KLF14 3 datasets
Motif DE_24h DE_24h-KLF14_MA0740.2 9 bp overlap
Motif DE_24h DE_24h-KLF14_MA0740.2 9 bp overlap
Motif DE_24h DE_24h-KLF14_MA0740.2 9 bp overlap
KLF15 3 datasets
Motif DE_24h DE_24h-KLF15_MA1513.2 8 bp overlap
Motif DE_24h DE_24h-KLF15_MA1513.2 8 bp overlap
Motif DE_24h DE_24h-KLF15_MA1513.2 8 bp overlap
KLF16 2 datasets
Motif DE_24h DE_24h-KLF16_MA0741.1 11 bp overlap
Motif DE_24h DE_24h-KLF16_MA0741.1 11 bp overlap
KLF2 2 datasets
Motif DE_24h DE_24h-KLF2_MA1515.2 8 bp overlap
Motif DE_24h DE_24h-KLF2_MA1515.2 8 bp overlap
KLF3 3 datasets
Motif DE_24h DE_24h-KLF3_MA1516.2 10 bp overlap
Motif DE_24h DE_24h-KLF3_MA1516.2 10 bp overlap
ChIP keratinocyte GSE140991.KLF3.keratinocyte 477 bp overlap
KLF4 2 datasets
Motif DE_24h DE_24h-KLF4_MA0039.5 8 bp overlap
Motif DE_24h DE_24h-KLF4_MA0039.5 8 bp overlap
KLF5 4 datasets
Motif DE_24h DE_24h-KLF5_MA0599.1 10 bp overlap
Motif DE_24h DE_24h-KLF5_MA0599.1 10 bp overlap
Motif DE_24h DE_24h-KLF5_MA0599.1 10 bp overlap
ChIP ESO-26 GSE132680.KLF5.ESO-26 202 bp overlap
KLF6 1 dataset
Motif DE_24h DE_24h-KLF6_MA1517.2 9 bp overlap
KLF7 2 datasets
Motif DE_24h DE_24h-KLF7_MA1959.2 8 bp overlap
Motif DE_24h DE_24h-KLF7_MA1959.2 8 bp overlap
KLF9 5 datasets
Motif DE_24h DE_24h-KLF9_MA1107.3 11 bp overlap
ChIP GBM1A GSE62211.KLF9.GBM1A 334 bp overlap
ChIP HEK293 ENCFF588INF 449 bp overlap
ChIP HEK293 ENCSR076EZB.KLF9.HEK293 266 bp overlap
ChIP MCF-7 ENCFF618FCM 412 bp overlap
MAX 1 dataset
ChIP P493-6_24HR GSE125863.MAX.P493-6_24HR 234 bp overlap
MAZ 1 dataset
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 285 bp overlap
MED26 2 datasets
ChIP HCT-116 GSE121355.MED26.HCT-116 420 bp overlap
ChIP HCT-116_aux GSE121355.MED26.HCT-116_aux 476 bp overlap
MYC 2 datasets
ChIP MCF-7 ENCFF394LGD 311 bp overlap
ChIP P493-6_scramble-shRNA GSE101853.MYC.P493-6_scramble-shRNA 174 bp overlap
MYCN 1 dataset
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 186 bp overlap
MYOCD 1 dataset
ChIP A-549 GSE128921.MYOCD.A-549 255 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 338 bp overlap
Mafg 1 dataset
Motif DE_24h DE_24h-Mafg_MA0659.4 12 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 150 bp overlap
PATZ1 4 datasets
Motif DE_24h DE_24h-PATZ1_MA1961.2 11 bp overlap
Motif DE_24h DE_24h-PATZ1_MA1961.2 11 bp overlap
Motif DE_24h DE_24h-PATZ1_MA1961.2 11 bp overlap
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 361 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 479 bp overlap
PGR 1 dataset
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 59 bp overlap
POLR2A 5 datasets
ChIP spleen ENCFF044PYR 261 bp overlap
ChIP spleen ENCFF446ZGT 429 bp overlap
ChIP spleen ENCFF446ZGT 114 bp overlap
ChIP spleen ENCFF706IUS 347 bp overlap
ChIP spleen ENCFF706IUS 92 bp overlap
POLR2G 1 dataset
ChIP HepG2 ENCFF508UTS 135 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 304 bp overlap
RAD21 1 dataset
ChIP MCF-7 GSE72082.RAD21.MCF-7 72 bp overlap
RBM39 2 datasets
ChIP Hep-G2 ENCSR339JTP.RBM39.Hep-G2 236 bp overlap
ChIP Hep-G2 GSE120104.RBM39.Hep-G2 236 bp overlap
RELA 1 dataset
ChIP 786-O GSE86092.RELA.786-O 162 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 259 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 245 bp overlap
RUNX1 2 datasets
ChIP SKH1_10d GSE87283.RUNX1.SKH1_10d 232 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.RUNX1.SKH1_RUNX1-EVI1_KD 226 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 371 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 204 bp overlap
SMARCA4 1 dataset
ChIP MCF-10A GSE74716.SMARCA4.MCF-10A 215 bp overlap
SMARCB1 1 dataset
ChIP HeLa-S3 ENCSR000EDK.SMARCB1.HeLa-S3 176 bp overlap
SP1 8 datasets
Motif DE_24h DE_24h-SP1_MA0079.5 9 bp overlap
Motif DE_24h DE_24h-SP1_MA0079.5 9 bp overlap
Motif DE_24h DE_24h-SP1_MA0079.5 9 bp overlap
ChIP HEK293 GSE76494.SP1.HEK293 225 bp overlap
ChIP HEK293T ERP007114.SP1.HEK293T 401 bp overlap
ChIP Hep-G2 ENCSR460YAM.SP1.Hep-G2 179 bp overlap
ChIP K-562 ENCSR991ELG.SP1.K-562 479 bp overlap
ChIP K562 ENCFF907BMO 407 bp overlap
SP2 5 datasets
Motif DE_24h DE_24h-SP2_MA0516.3 9 bp overlap
Motif DE_24h DE_24h-SP2_MA0516.3 9 bp overlap
Motif DE_24h DE_24h-SP2_MA0516.3 9 bp overlap
ChIP HEK293 ENCFF181QXT 419 bp overlap
ChIP HEK293 ENCSR807LQP.SP2.HEK293 223 bp overlap
SP3 5 datasets
Motif DE_24h DE_24h-SP3_MA0746.3 11 bp overlap
Motif DE_24h DE_24h-SP3_MA0746.3 11 bp overlap
Motif DE_24h DE_24h-SP3_MA0746.3 11 bp overlap
ChIP HEK293 ENCFF087XLA 461 bp overlap
ChIP HEK293 ENCSR141PZA.SP3.HEK293 233 bp overlap
SP4 3 datasets
Motif DE_24h DE_24h-SP4_MA0685.2 9 bp overlap
Motif DE_24h DE_24h-SP4_MA0685.2 9 bp overlap
ChIP HEK293 GSE76494.SP4.HEK293 315 bp overlap
SP8 1 dataset
Motif DE_24h DE_24h-SP8_MA0747.2 11 bp overlap
SP9 3 datasets
Motif DE_24h DE_24h-SP9_MA1564.2 10 bp overlap
Motif DE_24h DE_24h-SP9_MA1564.2 10 bp overlap
Motif DE_24h DE_24h-SP9_MA1564.2 10 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 271 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 277 bp overlap
STAT3 1 dataset
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 247 bp overlap
SUPT5H 1 dataset
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 238 bp overlap
SUZ12 2 datasets
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 249 bp overlap
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 479 bp overlap
TFDP1 1 dataset
Motif DE_24h DE_24h-TFDP1_MA1122.2 8 bp overlap
TRIM24 1 dataset
ChIP LNCaP_DHT GSE69331.TRIM24.LNCaP_DHT 220 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 247 bp overlap
ZBED4 1 dataset
Motif DE_24h DE_24h-ZBED4_MA2328.1 10 bp overlap
ZBTB24 1 dataset
Motif DE_24h DE_24h-ZBTB24_MA2330.1 10 bp overlap
ZBTB7A 1 dataset
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 91 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 236 bp overlap
ZNF143 1 dataset
ChIP MCF-7 GSE76454.ZNF143.MCF-7 176 bp overlap
ZNF148 1 dataset
Motif DE_24h DE_24h-ZNF148_MA1653.2 10 bp overlap
ZNF213 1 dataset
Motif DE_24h DE_24h-ZNF213_MA2121.1 12 bp overlap
ZNF214 1 dataset
Motif DE_12h DE_12h-ZNF214_MA1975.2 13 bp overlap
ZNF281 3 datasets
Motif DE_24h DE_24h-ZNF281_MA1630.3 10 bp overlap
Motif DE_24h DE_24h-ZNF281_MA1630.3 10 bp overlap
ChIP K-562 GSE121133.ZNF281.K-562 172 bp overlap
ZNF320 1 dataset
Motif DE_24h DE_24h-ZNF320_MA1976.2 20 bp overlap
ZNF331 1 dataset
Motif DE_24h DE_24h-ZNF331_MA1726.2 10 bp overlap
ZNF444 1 dataset
ChIP MCF-7 ENCSR038XIA.ZNF444.MCF-7 262 bp overlap
ZNF680 1 dataset
Motif DE_12h DE_12h-ZNF680_MA1729.2 11 bp overlap
ZNF682 2 datasets
Motif DE_12h DE_12h-ZNF682_MA1599.2 11 bp overlap
Motif DE_24h DE_24h-ZNF682_MA1599.2 11 bp overlap
Zfx 1 dataset
Motif DE_24h DE_24h-Zfx_MA0146.3 10 bp overlap
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