chr1 : 1,511,006 1,511,242
236 bp 107 TFs 1 linked gene
This 236 bp open chromatin element is linked to ATAD3A and is bound by 107 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
ATAD3A 918 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:1,506,006 – 1,516,242
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
107 transcription factors
Source
Cell type
ARID1B 1 dataset
ChIP K562 ENCFF938UXQ 236 bp overlap
ARNT 1 dataset
ChIP K562 ENCFF451RAF 236 bp overlap
ASH2L 2 datasets
ChIP GM12878 ENCSR849WCQ.ASH2L.GM12878 59 bp overlap
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 122 bp overlap
ATF3 1 dataset
ChIP K562 ENCFF604FPV 236 bp overlap
BACH2 1 dataset
ChIP OCI-Ly7 GSE44420.BACH2.OCI-Ly7 185 bp overlap
BCL11A 3 datasets
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 67 bp overlap
ChIP CD34_Day9_60min GSE104676.BCL11A.CD34_Day9_60min 55 bp overlap
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 68 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 107 bp overlap
BRCA1 1 dataset
ChIP H1 ENCFF288NOI 127 bp overlap
BRD3 2 datasets
ChIP HEK293T GSE39579.BRD3.HEK293T 122 bp overlap
ChIP MV4-11_IBET151_50nM GSE120715.BRD3.MV4-11_IBET151_50nM 57 bp overlap
BRD4 8 datasets
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 57 bp overlap
ChIP K-562_DMSO GSE138084.BRD4.K-562_DMSO 65 bp overlap
ChIP K-562_DMSO GSE99178.BRD4.K-562_DMSO 51 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 137 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 84 bp overlap
ChIP MM1-S GSE45984.BRD4.MM1-S 69 bp overlap
ChIP MM1-S_JQ1_50NM GSE42355.BRD4.MM1-S_JQ1_50NM 131 bp overlap
ChIP MV4-11_DMSO GSE120715.BRD4.MV4-11_DMSO 61 bp overlap
CDK9 1 dataset
ChIP Kelly_CYC065 GSE107126.CDK9.Kelly_CYC065 146 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 65 bp overlap
CREB1 4 datasets
ChIP GM23338 ENCFF432ZEW 197 bp overlap
ChIP H1 ENCFF955PMP 236 bp overlap
ChIP HepG2 ENCFF576ERP 236 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 236 bp overlap
CTCF 44 datasets
ChIP AG04449 ENCFF248MBD 158 bp overlap
ChIP AG09309 ENCFF478XPS 220 bp overlap
ChIP AG10803 ENCFF549AQK 142 bp overlap
ChIP BE2C ENCFF757SRF 197 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 103 bp overlap
ChIP DND-41 ENCFF913MRA 236 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 203 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 193 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 169 bp overlap
ChIP GM12864 ENCFF357DQE 194 bp overlap
ChIP GM12878 ENCFF217EAX 185 bp overlap
ChIP HFFc6 ENCFF005CJI 236 bp overlap
ChIP K-562 GSE70482.CTCF.K-562 211 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 236 bp overlap
ChIP KMS-11 ENCFF853JKX 236 bp overlap
ChIP MM.1S ENCFF869JMQ 218 bp overlap
ChIP NCI-H929 ENCFF305JAB 139 bp overlap
ChIP NCI-H929 ENCFF305JAB 236 bp overlap
ChIP OCI-LY1 ENCFF455ESK 236 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 236 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 236 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 236 bp overlap
ChIP SK-N-SH ENCFF575DMG 236 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 236 bp overlap
ChIP adrenal gland ENCFF886WNR 236 bp overlap
ChIP brain ENCFF685VRG 236 bp overlap
ChIP brain ENCFF685VRG 236 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 236 bp overlap
ChIP coronary artery ENCFF483TFF 236 bp overlap
ChIP endodermal cell ENCFF471YCZ 236 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 236 bp overlap
ChIP esophagus muscularis mucosa ENCFF421MEH 236 bp overlap
ChIP esophagus_muscularis-mucosa ENCSR559KAB.CTCF.esophagus_muscularis-mucosa 190 bp overlap
ChIP esophagus_squamous-epithelium ENCSR450FRI.CTCF.esophagus_squamous-epithelium 136 bp overlap
ChIP fibroblast of the aortic adventitia ENCFF639DMR 186 bp overlap
ChIP foreskin fibroblast ENCFF671HLG 191 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 236 bp overlap
ChIP neural crest cell ENCFF182LWK 236 bp overlap
ChIP neural progenitor cell ENCFF420RBO 236 bp overlap
ChIP neural progenitor cell ENCFF581WPG 236 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 211 bp overlap
ChIP testis ENCFF409BGH 229 bp overlap
ChIP transverse colon ENCFF077CMZ 236 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 236 bp overlap
CTCF_s 1 dataset
ChIP HeLa-S3_biotin GSE108869.CTCF_s.HeLa-S3_biotin 79 bp overlap
CUX1 1 dataset
ChIP K562 ENCFF057AIX 196 bp overlap
DMAP1 1 dataset
ChIP Hep-G2 ENCSR670YPQ.DMAP1.Hep-G2 125 bp overlap
DPF2 2 datasets
ChIP K562 ENCFF775HUO 236 bp overlap
ChIP K562 ENCFF775HUO 94 bp overlap
E2F1 11 datasets
ChIP HMEC-1 GSE62425.E2F1.HMEC-1 236 bp overlap
ChIP HepG2 ENCFF919WXY 236 bp overlap
ChIP K-562 ENCSR563LLO.E2F1.K-562 219 bp overlap
ChIP K562 ENCFF163BSY 236 bp overlap
ChIP K562 ENCFF191BFW 236 bp overlap
ChIP LNCaP-abl GSE67809.E2F1.LNCaP-abl 179 bp overlap
ChIP LNCaP_shCON GSE94958.E2F1.LNCaP_shCON 181 bp overlap
ChIP MCF-7 ENCFF692OYJ 236 bp overlap
ChIP MDA-MB-231 GSE95303.E2F1.MDA-MB-231 134 bp overlap
ChIP MM1-S GSE80661.E2F1.MM1-S 236 bp overlap
ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 173 bp overlap
E2F3 1 dataset
ChIP K562 ENCFF922ILX 236 bp overlap
E2F4 7 datasets
ChIP GM12878 ENCFF509WLQ 230 bp overlap
ChIP Hep-G2 ENCSR924LSO.E2F4.Hep-G2 166 bp overlap
ChIP HepG2 ENCFF311TOD 236 bp overlap
ChIP K-562 ENCSR000EWL.E2F4.K-562 167 bp overlap
ChIP K562 ENCFF950BEB 222 bp overlap
ChIP MCF-10A ENCSR000DOR.E2F4.MCF-10A 166 bp overlap
ChIP MCF-7_TAM GSE41561.E2F4.MCF-7_TAM 156 bp overlap
E2F6 6 datasets
ChIP H1 ENCFF785DWK 182 bp overlap
ChIP HeLa-S3 ENCSR000EVK.E2F6.HeLa-S3 161 bp overlap
ChIP K-562 ENCSR000BLI.E2F6.K-562 150 bp overlap
ChIP K-562 ENCSR000EWJ.E2F6.K-562 158 bp overlap
ChIP K562 ENCFF136LTS 113 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 164 bp overlap
E2F7 2 datasets
ChIP K-562 ENCSR171CAY.E2F7.K-562 153 bp overlap
ChIP K562 ENCFF212JSU 205 bp overlap
E2F8 5 datasets
ChIP GM12878 ENCFF910KAC 236 bp overlap
ChIP GM12878 ENCSR793HVL.E2F8.GM12878 91 bp overlap
ChIP K-562 ENCSR953DVM.E2F8.K-562 179 bp overlap
ChIP K562 ENCFF985IKY 236 bp overlap
ChIP MCF-7 ENCFF641CMX 108 bp overlap
ELF4 1 dataset
ChIP K562 ENCFF200OMJ 236 bp overlap
EP400 1 dataset
ChIP K-562 ENCSR817QKV.EP400.K-562 161 bp overlap
ESRRA 1 dataset
ChIP SK-BR-3_HRG GSE81651.ESRRA.SK-BR-3_HRG 150 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 163 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 236 bp overlap
FOXA1 2 datasets
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 63 bp overlap
ChIP 22Rv1_CST_Crispr_WT3 GSE123618.FOXA1.22Rv1_CST_Crispr_WT3 72 bp overlap
FOXM1 11 datasets
ChIP GM12878 ENCFF264DJE 236 bp overlap
ChIP HEK293 GSE60032.FOXM1.HEK293 226 bp overlap
ChIP HEK293T ENCFF914UUM 225 bp overlap
ChIP HeLa GSE52098.FOXM1.HeLa 236 bp overlap
ChIP Ishikawa ENCFF578VDD 236 bp overlap
ChIP Ishikawa ENCSR000BUS.FOXM1.Ishikawa 236 bp overlap
ChIP K-562 ENCSR429QPP.FOXM1.K-562 202 bp overlap
ChIP K562 ENCFF255RHV 236 bp overlap
ChIP K562 ENCFF490XGT 236 bp overlap
ChIP MCF-7 ENCFF363FKA 236 bp overlap
ChIP MCF-7 ENCSR000BUJ.FOXM1.MCF-7 153 bp overlap
GTF2E2 1 dataset
ChIP K562 ENCFF741URT 62 bp overlap
HDAC2 1 dataset
ChIP PC-3 GSE147455.HDAC2.PC-3 75 bp overlap
HMBOX1 3 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 236 bp overlap
ChIP K562 ENCFF055GAZ 200 bp overlap
ChIP K562 ENCFF317JJX 189 bp overlap
HNF4A 1 dataset
ChIP IM95 GSE114018.HNF4A.IM95 132 bp overlap
ILF3 1 dataset
ChIP K-562 GSE103215.ILF3.K-562 66 bp overlap
KDM5B 1 dataset
ChIP K-562 ENCSR000AQA.KDM5B.K-562 144 bp overlap
L3MBTL2 2 datasets
ChIP HEK293T ENCFF482NJV 236 bp overlap
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 147 bp overlap
LIN54 1 dataset
ChIP Hep-G2 ENCSR597MCV.LIN54.Hep-G2 160 bp overlap
MAFK 1 dataset
ChIP OCI-Ly7 GSE47784.MAFK.OCI-Ly7 153 bp overlap
MAX 6 datasets
ChIP H1 ENCFF914VQY 235 bp overlap
ChIP HCT116 ENCFF810LEN 104 bp overlap
ChIP Hep-G2 ENCSR000BTM.MAX.Hep-G2 89 bp overlap
ChIP K-562 ENCSR000EFV.MAX.K-562 81 bp overlap
ChIP MCF-7 ENCSR000BUL.MAX.MCF-7 63 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 66 bp overlap
MED26 2 datasets
ChIP HCT-116 GSE121355.MED26.HCT-116 57 bp overlap
ChIP HCT-116_aux GSE121355.MED26.HCT-116_aux 212 bp overlap
MGA 2 datasets
ChIP K562 ENCFF140CEX 236 bp overlap
ChIP K562 ENCFF140CEX 132 bp overlap
MTA2 1 dataset
ChIP K562 ENCFF441KCP 190 bp overlap
MYBL2 5 datasets
ChIP Hep-G2 ENCSR581KCO.MYBL2.Hep-G2 213 bp overlap
ChIP HepG2 ENCFF650QJC 236 bp overlap
ChIP K-562 ENCSR162IEM.MYBL2.K-562 167 bp overlap
ChIP K562 ENCFF299JBQ 236 bp overlap
ChIP WTC11 ENCFF166TKT 236 bp overlap
MYC 1 dataset
ChIP MM1-S_DMSO GSE36354.MYC.MM1-S_DMSO 139 bp overlap
MYCN 1 dataset
ChIP LNCaP_DHT GSE117304.MYCN.LNCaP_DHT 54 bp overlap
NCOR1 1 dataset
ChIP K562 ENCFF788MPU 211 bp overlap
NELFCD 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.NELFCD.DLD-1_NELFCD-AID 172 bp overlap
NFRKB 2 datasets
ChIP K-562 ENCSR657EOF.NFRKB.K-562 53 bp overlap
ChIP K562 ENCFF057YFW 165 bp overlap
NFYB 2 datasets
ChIP GM12878 ENCFF474DNH 236 bp overlap
ChIP HepG2 ENCFF174VYX 236 bp overlap
NFYC 2 datasets
ChIP Hep-G2 ENCSR569ARC.NFYC.Hep-G2 142 bp overlap
ChIP HepG2 ENCFF836FYP 236 bp overlap
NR2F1 2 datasets
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 61 bp overlap
ChIP K562 ENCFF221HJH 236 bp overlap
NR2F2 2 datasets
ChIP K-562 ENCSR000BRS.NR2F2.K-562 110 bp overlap
ChIP K562 ENCFF004YPK 236 bp overlap
PHF8 1 dataset
ChIP K-562 ENCSR000AQH.PHF8.K-562 76 bp overlap
PML 1 dataset
ChIP GM12878 ENCFF160JQZ 84 bp overlap
POLR2A 4 datasets
ChIP H1 ENCFF833NJP 222 bp overlap
ChIP HCT116 ENCFF508RDJ 178 bp overlap
ChIP K562 ENCFF514URW 236 bp overlap
ChIP K562 ENCFF836GHX 236 bp overlap
RB1 1 dataset
ChIP GM12878 ENCSR785OKZ.RB1.GM12878 73 bp overlap
RBFOX2 4 datasets
ChIP K-562 GSE120104.RBFOX2.K-562 161 bp overlap
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 157 bp overlap
ChIP K562 ENCFF196WTG 70 bp overlap
ChIP K562 ENCFF967GRF 74 bp overlap
REL 1 dataset
ChIP HepG2 ENCFF232LZK 236 bp overlap
REST 1 dataset
ChIP colorectal-cancer_CRC121_intact GSE112555.REST.colorectal-cancer_CRC121_intact 92 bp overlap
RFX1 2 datasets
ChIP MCF-7 ENCFF782EZS 133 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 176 bp overlap
RFX5 1 dataset
ChIP HeLa-S3 ENCSR000ECX.RFX5.HeLa-S3 84 bp overlap
SIN3A 4 datasets
ChIP H1 ENCFF042ZSL 236 bp overlap
ChIP K-562 ENCSR920BLG.SIN3A.K-562 144 bp overlap
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 131 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 64 bp overlap
SLC30A9 1 dataset
ChIP K562 ENCFF932OWV 236 bp overlap
SMAD2-3 1 dataset
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 143 bp overlap
SMAD3 1 dataset
ChIP HCC1954 GSE104760.SMAD3.HCC1954 167 bp overlap
SMARCA4 4 datasets
ChIP 22Rv1 GSE115615.SMARCA4.22Rv1 57 bp overlap
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 59 bp overlap
ChIP K562 ENCFF316MCJ 236 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 163 bp overlap
SNAI2 1 dataset
ChIP PC-9_2DF GSE131687.SNAI2.PC-9_2DF 66 bp overlap
SP1 1 dataset
ChIP HCT116 ENCFF800LBN 236 bp overlap
STAT3 2 datasets
ChIP MCF-7 GSE152203.STAT3.MCF-7 111 bp overlap
ChIP MDA-MB-453 GSE152203.STAT3.MDA-MB-453 54 bp overlap
SUPT5H 3 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 174 bp overlap
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 183 bp overlap
ChIP DLD-1_NELFE-AID GSE144786.SUPT5H.DLD-1_NELFE-AID 133 bp overlap
TAF1 2 datasets
ChIP K-562 ENCSR000BKS.TAF1.K-562 169 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 166 bp overlap
TAF9B 1 dataset
ChIP K562 ENCFF121ZIF 236 bp overlap
TARDBP 1 dataset
ChIP HepG2 ENCFF356JNC 236 bp overlap
TBP 1 dataset
ChIP K-562 GSE55306.TBP.K-562 236 bp overlap
TFAP4 1 dataset
ChIP DLD-1 GSE46935.TFAP4.DLD-1 214 bp overlap
TFDP1 5 datasets
ChIP K-562 ENCSR017GBO.TFDP1.K-562 148 bp overlap
ChIP K562 ENCFF794ZXJ 236 bp overlap
ChIP K562 ENCFF794ZXJ 236 bp overlap
ChIP K562 ENCFF794ZXJ 79 bp overlap
ChIP MM1-S GSE80661.TFDP1.MM1-S 230 bp overlap
TFDP2 2 datasets
ChIP Hep-G2 ENCSR069JKP.TFDP2.Hep-G2 159 bp overlap
ChIP HepG2 ENCFF794WDW 236 bp overlap
THRAP3 1 dataset
ChIP K562 ENCFF445ZEJ 236 bp overlap
TOE1 1 dataset
ChIP K562 ENCFF728FRA 236 bp overlap
TRIM24 1 dataset
ChIP K562 ENCFF284DKY 236 bp overlap
USF1 4 datasets
ChIP H1 ENCFF090WVU 132 bp overlap
ChIP K-562 ENCSR000BKT.USF1.K-562 114 bp overlap
ChIP K562 ENCFF633EZB 131 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 85 bp overlap
XRCC5 1 dataset
ChIP K-562 GSE120104.XRCC5.K-562 169 bp overlap
ZBTB2 1 dataset
ChIP K562 ENCFF290ESQ 236 bp overlap
ZBTB33 4 datasets
ChIP HepG2 ENCFF778UKV 236 bp overlap
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 236 bp overlap
ChIP K562 ENCFF427SDV 236 bp overlap
ChIP K562 ENCFF875HLX 236 bp overlap
ZBTB34 1 dataset
ChIP HepG2 ENCFF161MIO 236 bp overlap
ZBTB7A 3 datasets
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 141 bp overlap
ChIP K-562 GSE103445.ZBTB7A.K-562 117 bp overlap
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 154 bp overlap
ZEB1 5 datasets
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 219 bp overlap
ChIP HEK293 ENCFF007TAP 236 bp overlap
ChIP HEK293 ENCSR909HMT.ZEB1.HEK293 154 bp overlap
ChIP HepG2 ENCFF808RQT 236 bp overlap
ChIP RKO GSE88734.ZEB1.RKO 228 bp overlap
ZEB2 2 datasets
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 125 bp overlap
ChIP K562 ENCFF795CMH 236 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 69 bp overlap
ZNF230 1 dataset
ChIP HepG2 ENCFF370ATB 236 bp overlap
ZNF543 1 dataset
ChIP HepG2 ENCFF864SAR 194 bp overlap
ZNF592 2 datasets
ChIP K-562 ENCSR249BHQ.ZNF592.K-562 95 bp overlap
ChIP K562 ENCFF547OSS 155 bp overlap
ZNF639 2 datasets
ChIP K562 ENCFF267NLX 236 bp overlap
ChIP K562 ENCFF898FKC 219 bp overlap
ZNF70 1 dataset
ChIP SK-N-SH ENCFF833ACX 147 bp overlap
ZZZ3 1 dataset
ChIP K562 ENCFF845XAO 236 bp overlap