chr6 : 105,993,289 – 105,993,887
598 bp 110 TFs 1 linked gene
This 598 bp open chromatin element is linked to PRDM1 and is bound by 110 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PRDM1 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:105,988,289 – 105,998,887
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
110 transcription factors
Source
Cell type
BCL6 5 datasets
ChIP B-cell_GERMINAL_CENTER GSE68349.BCL6.B-cell_GERMINAL_CENTER 209 bp overlap
Motif DE_72h DE_72h-BCL6_MA0463.3 13 bp overlap
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 223 bp overlap
ChIP OCI-Ly1_UV GSE103125.BCL6.OCI-Ly1_UV 338 bp overlap
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 170 bp overlap
BCL6B 2 datasets
ChIP HEK293 ENCFF555YRB 365 bp overlap
ChIP HEK293 ENCSR673SGK.BCL6B.HEK293 210 bp overlap
BCOR 1 dataset
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 309 bp overlap
BRD2 1 dataset
ChIP MM1-S GSE43743.BRD2.MM1-S 236 bp overlap
BRD3 1 dataset
ChIP H-1_DE GSE126661.BRD3.H-1_DE 286 bp overlap
BRD4 11 datasets
ChIP CD4_Th1_DMSO GSE62482.BRD4.CD4_Th1_DMSO 142 bp overlap
ChIP CLL_patient1_4h_CpG_BET GSE109411.BRD4.CLL_patient1_4h_CpG_BET 239 bp overlap
ChIP HEK293T GSE39579.BRD4.HEK293T 170 bp overlap
ChIP MM1-S_JQ1_150NM GSE49224.BRD4.MM1-S_JQ1_150NM 230 bp overlap
ChIP MM1-S_JQ1_50NM GSE42355.BRD4.MM1-S_JQ1_50NM 248 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 314 bp overlap
ChIP MOLM-14_CA25 GSE65138.BRD4.MOLM-14_CA25 369 bp overlap
ChIP NMC24335 GSE96775.BRD4.NMC24335 356 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 57 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 298 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 188 bp overlap
CBX7 1 dataset
ChIP lymphocyte_DMSO GSE110139.CBX7.lymphocyte_DMSO 376 bp overlap
CDK8 3 datasets
ChIP MM1-S GSE43743.CDK8.MM1-S 182 bp overlap
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 77 bp overlap
ChIP leiomyoma_PT848 GSE128230.CDK8.leiomyoma_PT848 57 bp overlap
CEBPA 1 dataset
Motif DE_72h DE_72h-CEBPA_MA0102.5 10 bp overlap
CEBPD 1 dataset
Motif DE_72h DE_72h-CEBPD_MA0836.3 8 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 172 bp overlap
COBLL1 1 dataset
ChIP LTAD_EtOH GSE94577.COBLL1.LTAD_EtOH 73 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 308 bp overlap
CUX1 1 dataset
Motif DE_72h DE_72h-CUX1_MA0754.3 9 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 266 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 200 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 158 bp overlap
ERF::FOXI1 4 datasets
Motif DE_24h DE_24h-ERFFOXI1_MA1935.2 10 bp overlap
Motif DE_36h DE_36h-ERFFOXI1_MA1935.2 10 bp overlap
Motif DE_60h DE_60h-ERFFOXI1_MA1935.2 10 bp overlap
Motif DE_72h DE_72h-ERFFOXI1_MA1935.2 10 bp overlap
ETV2::FOXI1 4 datasets
Motif DE_24h DE_24h-ETV2FOXI1_MA1942.2 11 bp overlap
Motif DE_36h DE_36h-ETV2FOXI1_MA1942.2 11 bp overlap
Motif DE_60h DE_60h-ETV2FOXI1_MA1942.2 11 bp overlap
Motif DE_72h DE_72h-ETV2FOXI1_MA1942.2 11 bp overlap
EZH2 10 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 125 bp overlap
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 129 bp overlap
ChIP GM23338 ENCFF613YON 323 bp overlap
ChIP GM23338 ENCFF886DXX 55 bp overlap
ChIP H1 ENCFF232NZA 598 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 225 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 251 bp overlap
ChIP hepatocyte ENCFF552DZB 194 bp overlap
ChIP neural progenitor cell ENCFF018MKA 463 bp overlap
ChIP neural progenitor cell ENCFF472NFV 598 bp overlap
FLI1::FOXI1 4 datasets
Motif DE_24h DE_24h-FLI1FOXI1_MA1950.2 11 bp overlap
Motif DE_36h DE_36h-FLI1FOXI1_MA1950.2 11 bp overlap
Motif DE_60h DE_60h-FLI1FOXI1_MA1950.2 11 bp overlap
Motif DE_72h DE_72h-FLI1FOXI1_MA1950.2 11 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 231 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 598 bp overlap
ChIP DE DE-FOXA2-2 510 bp overlap
FOXC2 1 dataset
Motif DE_72h DE_72h-FOXC2_MA0846.2 11 bp overlap
FOXD2 1 dataset
Motif DE_72h DE_72h-FOXD2_MA0847.4 11 bp overlap
FOXE1 1 dataset
Motif DE_72h DE_72h-FOXE1_MA1487.3 12 bp overlap
FOXJ2::ELF1 4 datasets
Motif DE_24h DE_24h-FOXJ2ELF1_MA1952.2 11 bp overlap
Motif DE_36h DE_36h-FOXJ2ELF1_MA1952.2 11 bp overlap
Motif DE_60h DE_60h-FOXJ2ELF1_MA1952.2 11 bp overlap
Motif DE_72h DE_72h-FOXJ2ELF1_MA1952.2 11 bp overlap
GATA2 1 dataset
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 131 bp overlap
GATA3 1 dataset
ChIP SK-N-SH ENCFF040SSB 286 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 598 bp overlap
ChIP DE DE-GATA4-2 598 bp overlap
ChIP foregut GSE117136.GATA4.foregut 598 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 598 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 567 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 598 bp overlap
ChIP DE DE-GATA6-2 598 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 421 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 558 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 445 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 598 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 596 bp overlap
ChIP foregut GSE117136.GATA6.foregut 598 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 251 bp overlap
GATAD2B 1 dataset
ChIP GM12878 ENCSR828NCB.GATAD2B.GM12878 178 bp overlap
GRHL1 1 dataset
Motif DE_72h DE_72h-GRHL1_MA0647.2 10 bp overlap
GRHL2 1 dataset
Motif DE_72h DE_72h-GRHL2_MA1105.3 8 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 171 bp overlap
HLF 1 dataset
Motif DE_72h DE_72h-HLF_MA0043.4 9 bp overlap
HNF1A 1 dataset
Motif DE_72h DE_72h-HNF1A_MA0046.3 13 bp overlap
HSF1 1 dataset
ChIP BPLER GSE38901.HSF1.BPLER 154 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 150 bp overlap
IKZF1 4 datasets
Motif DE_24h DE_24h-IKZF1_MA1508.2 8 bp overlap
Motif DE_36h DE_36h-IKZF1_MA1508.2 8 bp overlap
Motif DE_60h DE_60h-IKZF1_MA1508.2 8 bp overlap
Motif DE_72h DE_72h-IKZF1_MA1508.2 8 bp overlap
IRF4 1 dataset
ChIP BC-3 GSE132777.IRF4.BC-3 363 bp overlap
JARID2 2 datasets
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 311 bp overlap
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 155 bp overlap
JUN 1 dataset
ChIP Karpas-299 GSE151413.JUN.Karpas-299 222 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 272 bp overlap
KLF1 1 dataset
Motif DE_72h DE_72h-KLF1_MA0493.3 8 bp overlap
KLF10 1 dataset
Motif DE_72h DE_72h-KLF10_MA1511.2 9 bp overlap
KLF14 1 dataset
Motif DE_72h DE_72h-KLF14_MA0740.2 9 bp overlap
KLF16 1 dataset
Motif DE_72h DE_72h-KLF16_MA0741.1 11 bp overlap
KLF2 1 dataset
Motif DE_72h DE_72h-KLF2_MA1515.2 8 bp overlap
KLF4 1 dataset
Motif DE_72h DE_72h-KLF4_MA0039.5 8 bp overlap
KLF5 1 dataset
Motif DE_72h DE_72h-KLF5_MA0599.1 10 bp overlap
KMT2A 4 datasets
ChIP MV4-11 GSE83671.KMT2A.MV4-11 235 bp overlap
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 445 bp overlap
ChIP SHI-1 GSE95511.KMT2A.SHI-1 188 bp overlap
ChIP blood_cord GSE83671.KMT2A.blood_cord 200 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 357 bp overlap
ChIP SK-N-SH ENCSR000BVD.MAX.SK-N-SH 167 bp overlap
MED1 2 datasets
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 166 bp overlap
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 227 bp overlap
MEF2B 1 dataset
ChIP tonsil GSE110682.MEF2B.tonsil 298 bp overlap
MEN1 2 datasets
ChIP OCI-AML-3_DMSO GSE129636.MEN1.OCI-AML-3_DMSO 238 bp overlap
ChIP RS4-11_DMSO-D3-180110 GSE127507.MEN1.RS4-11_DMSO-D3-180110 565 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 236 bp overlap
NANOG 2 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 341 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 594 bp overlap
NCOA2 1 dataset
ChIP MCF-7 ERP000901.NCOA2.MCF-7 179 bp overlap
NFIL3 1 dataset
Motif DE_72h DE_72h-NFIL3_MA0025.3 9 bp overlap
Nr2e3 1 dataset
Motif DE_72h DE_72h-Nr2e3_MA0164.2 6 bp overlap
PATZ1 1 dataset
Motif DE_72h DE_72h-PATZ1_MA1961.2 11 bp overlap
POLR2A 1 dataset
ChIP gastroesophageal sphincter ENCFF070PCA 341 bp overlap
POU2F3 1 dataset
Motif DE_72h DE_72h-POU2F3_MA0627.3 9 bp overlap
POU5F1 4 datasets
Motif DE_72h DE_72h-POU5F1_MA1115.2 7 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 79 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 65 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 289 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 360 bp overlap
PRDM9 1 dataset
Motif DE_72h DE_72h-PRDM9_MA1723.2 20 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 70 bp overlap
RAD21 2 datasets
ChIP IMR-90 ENCSR000EFJ.RAD21.IMR-90 245 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 258 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 213 bp overlap
RELA 4 datasets
Motif DE_24h DE_24h-RELA_MA0107.1 10 bp overlap
Motif DE_36h DE_36h-RELA_MA0107.1 10 bp overlap
Motif DE_60h DE_60h-RELA_MA0107.1 10 bp overlap
Motif DE_72h DE_72h-RELA_MA0107.1 10 bp overlap
RNF2 2 datasets
ChIP H1 ENCFF239FFS 598 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 104 bp overlap
RORB 1 dataset
Motif DE_72h DE_72h-RORB_MA1150.2 10 bp overlap
RORC 1 dataset
Motif DE_72h DE_72h-RORC_MA1151.2 10 bp overlap
RREB1 1 dataset
Motif DE_72h DE_72h-RREB1_MA0073.2 19 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 300 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 213 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 598 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 570 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 253 bp overlap
SMARCA4 1 dataset
ChIP hiPSC GSE124903.SMARCA4.hiPSC 299 bp overlap
SMARCC1 3 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 317 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 130 bp overlap
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 66 bp overlap
SOX15 1 dataset
Motif DE_72h DE_72h-SOX15_MA1152.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 218 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 598 bp overlap
SOX18 1 dataset
Motif DE_72h DE_72h-SOX18_MA1563.2 8 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 254 bp overlap
SOX8 1 dataset
Motif DE_72h DE_72h-SOX8_MA0868.3 7 bp overlap
SOX9 1 dataset
Motif DE_72h DE_72h-SOX9_MA0077.2 8 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 157 bp overlap
SP8 1 dataset
Motif DE_72h DE_72h-SP8_MA0747.2 11 bp overlap
SRY 1 dataset
Motif DE_72h DE_72h-SRY_MA0084.2 7 bp overlap
SS18 4 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 120 bp overlap
ChIP Aska-SS GSE108025.SS18.Aska-SS 283 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 514 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 189 bp overlap
SUZ12 4 datasets
ChIP H1 ENCFF881NFR 598 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 320 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 153 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 214 bp overlap
Six3 1 dataset
Motif DE_72h DE_72h-Six3_MA0631.2 11 bp overlap
Sox5 1 dataset
Motif DE_72h DE_72h-Sox5_MA0087.3 8 bp overlap
Sox7 1 dataset
Motif DE_72h DE_72h-Sox7_MA2095.1 10 bp overlap
TAF1 1 dataset
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 124 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 218 bp overlap
TCF7L2 1 dataset
ChIP CD34_PROG_BIO GSE29194.TCF7L2.CD34_PROG_BIO 567 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 344 bp overlap
TFCP2 1 dataset
Motif DE_72h DE_72h-TFCP2_MA1968.2 9 bp overlap
TP53 1 dataset
ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 184 bp overlap
ZC3H8 1 dataset
ChIP HepG2 ENCFF862NOM 75 bp overlap
ZNF418 2 datasets
Motif DE_72h DE_72h-ZNF418_MA1980.1 15 bp overlap
Motif DE_72h DE_72h-ZNF418_MA1980.1 15 bp overlap
ZNF556 1 dataset
ChIP HepG2 ENCFF008WIK 57 bp overlap
ZNF766 4 datasets
Motif DE_24h DE_24h-ZNF766_MA2098.1 9 bp overlap
Motif DE_36h DE_36h-ZNF766_MA2098.1 9 bp overlap
Motif DE_60h DE_60h-ZNF766_MA2098.1 9 bp overlap
Motif DE_72h DE_72h-ZNF766_MA2098.1 9 bp overlap
ZNF85 1 dataset
Motif DE_72h DE_72h-ZNF85_MA1720.2 12 bp overlap
ZSCAN16 2 datasets
Motif DE_72h DE_72h-ZSCAN16_MA2100.1 18 bp overlap
Motif DE_72h DE_72h-ZSCAN16_MA2100.1 18 bp overlap
Zic1::Zic2 1 dataset
Motif DE_72h DE_72h-Zic1Zic2_MA1628.2 7 bp overlap
Zic3 1 dataset
Motif DE_72h DE_72h-Zic3_MA0697.3 7 bp overlap
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