chr6 : 41,408,576 41,409,789
1,213 bp 127 TFs 3 linked genes
This 1.2 kb open chromatin element is linked to FOXP4-AS1, FOXP4, and MDFI and is bound by 127 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
FOXP4-AS1 136.9 kb Distal Multiome
FOXP4 137.1 kb Distal Multiome
MDFI 227.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:41,403,576 – 41,414,789
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
127 transcription factors
Source
Cell type
AGO1 1 dataset
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 228 bp overlap
AR 2 datasets
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 148 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 911 bp overlap
ARNT 1 dataset
ChIP 501-mel GSE95280.ARNT.501-mel 412 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 614 bp overlap
BARX1 1 dataset
Motif DE_36h DE_36h-BARX1_MA0875.2 6 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 1213 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 577 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 951 bp overlap
BRD1 2 datasets
ChIP HUES-64 GSE104059.BRD1.HUES-64 289 bp overlap
ChIP HUES-64 GSE104059.BRD1.HUES-64 227 bp overlap
BRD4 8 datasets
ChIP CLL_patient1_4h_CpG GSE109411.BRD4.CLL_patient1_4h_CpG 225 bp overlap
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 218 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 331 bp overlap
ChIP T-47D ERP003925.BRD4.T-47D 359 bp overlap
ChIP hESC GSE33281.BRD4.hESC 66 bp overlap
ChIP retina_AB1-FW13 GSE86981.BRD4.retina_AB1-FW13 489 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 1140 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 894 bp overlap
BSX 1 dataset
Motif DE_36h DE_36h-BSX_MA0876.2 6 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 565 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 493 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 103 bp overlap
CTBP2 3 datasets
ChIP H1 ENCFF329MAX 591 bp overlap
ChIP H1 ENCFF329MAX 591 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 393 bp overlap
CTCF 2 datasets
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 297 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 244 bp overlap
Cebpa 5 datasets
ChIP BLaER1 ENCFF031ISE 257 bp overlap
ChIP BLaER1 ENCFF274GAT 213 bp overlap
ChIP BLaER1 ENCFF364PUR 251 bp overlap
ChIP BLaER1 ENCFF460KDD 299 bp overlap
ChIP BLaER1 ENCFF896HSY 275 bp overlap
DLX1 1 dataset
Motif DE_36h DE_36h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_36h DE_36h-DLX6_MA0882.2 6 bp overlap
Dlx2 1 dataset
Motif DE_36h DE_36h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif DE_36h DE_36h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_36h DE_36h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif DE_36h DE_36h-Dlx5_MA1476.3 8 bp overlap
E2F1 1 dataset
ChIP MCF-7 ENCSR000EWX.E2F1.MCF-7 194 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 220 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 1056 bp overlap
EGR1 1 dataset
ChIP A-375 GSE116190.EGR1.A-375 226 bp overlap
ERG 2 datasets
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 185 bp overlap
ChIP MCF-7 GSE23730.ERG.MCF-7 198 bp overlap
ESR1 4 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 391 bp overlap
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 173 bp overlap
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 563 bp overlap
ChIP MCF-7_Veh GSE93510.ESR1.MCF-7_Veh 319 bp overlap
EZH2 14 datasets
ChIP GM23338 ENCFF613YON 82 bp overlap
ChIP GM23338 ENCFF613YON 1208 bp overlap
ChIP GM23338 ENCFF886DXX 301 bp overlap
ChIP H1 ENCFF232NZA 1213 bp overlap
ChIP astrocyte ENCFF365JTP 263 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 203 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 925 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 703 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 1090 bp overlap
ChIP hESC GSE113817.EZH2.hESC 681 bp overlap
ChIP hESC_KO GSE113817.EZH2.hESC_KO 294 bp overlap
ChIP hepatocyte ENCFF552DZB 204 bp overlap
ChIP neural progenitor cell ENCFF018MKA 1078 bp overlap
ChIP neural progenitor cell ENCFF472NFV 1213 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 308 bp overlap
GABPA 2 datasets
ChIP WA01 ENCSR000BIW.GABPA.WA01 143 bp overlap
ChIP WA01 ENCSR000BIW.GABPA.WA01 182 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC9ebs GSE107639.GATA2.hiPSC_SLC9ebs 269 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 284 bp overlap
ChIP DE DE-GATA4-2 670 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-2 615 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 200 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 840 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 1213 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 1213 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 966 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 795 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 342 bp overlap
GBX2 1 dataset
Motif DE_36h DE_36h-GBX2_MA0890.2 6 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 252 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 174 bp overlap
HESX1 1 dataset
Motif DE_36h DE_36h-HESX1_MA0894.2 6 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 581 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 266 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 508 bp overlap
HOXA6 1 dataset
Motif DE_36h DE_36h-HOXA6_MA1497.2 7 bp overlap
HOXA7 1 dataset
Motif DE_36h DE_36h-HOXA7_MA1498.3 6 bp overlap
HOXB6 1 dataset
Motif DE_36h DE_36h-HOXB6_MA1500.2 7 bp overlap
HOXB7 1 dataset
Motif DE_36h DE_36h-HOXB7_MA1501.2 7 bp overlap
HOXB8 1 dataset
Motif DE_36h DE_36h-HOXB8_MA1502.2 7 bp overlap
HOXD8 1 dataset
Motif DE_36h DE_36h-HOXD8_MA0910.3 7 bp overlap
Hmx1 1 dataset
Motif DE_36h DE_36h-Hmx1_MA0896.2 9 bp overlap
Hmx2 1 dataset
Motif DE_36h DE_36h-Hmx2_MA0897.2 15 bp overlap
Hmx3 1 dataset
Motif DE_36h DE_36h-Hmx3_MA0898.2 9 bp overlap
INO80 1 dataset
ChIP Huh-7 GSE97411.INO80.Huh-7 277 bp overlap
IRF1 1 dataset
ChIP K-562_EPZ GSE129380.IRF1.K-562_EPZ 230 bp overlap
JARID2 2 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 1076 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 1037 bp overlap
JUN 3 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 1043 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 263 bp overlap
ChIP MDA-BoM-1833_shp27 GSE112444.JUN.MDA-BoM-1833_shp27 184 bp overlap
KDM4A 2 datasets
ChIP WA01 ENCSR000AVC.KDM4A.WA01 612 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 177 bp overlap
KDM6B 2 datasets
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 237 bp overlap
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 253 bp overlap
LBX2 1 dataset
Motif DE_36h DE_36h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_36h DE_36h-LHX2_MA0700.3 6 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 209 bp overlap
MAX 3 datasets
ChIP H1 ENCFF914VQY 191 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 192 bp overlap
ChIP WTC11 ENCFF223QFY 578 bp overlap
MEIS1 2 datasets
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
MEN1 1 dataset
ChIP MOLM-13_compound10 GSE149183.MEN1.MOLM-13_compound10 308 bp overlap
MSX1 1 dataset
Motif DE_36h DE_36h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_36h DE_36h-MSX2_MA0708.3 6 bp overlap
MYB 1 dataset
Motif DE_36h DE_36h-MYB_MA0100.4 6 bp overlap
Msx3 1 dataset
Motif DE_36h DE_36h-Msx3_MA0709.2 6 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 1140 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 117 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 345 bp overlap
NCAPH2 1 dataset
ChIP HEK293 GSE97540.NCAPH2.HEK293 485 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 263 bp overlap
NFATC3 1 dataset
ChIP Hep-G2 GSE97661.NFATC3.Hep-G2 265 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 78 bp overlap
NRF1 1 dataset
ChIP WA01 ENCSR000ECC.NRF1.WA01 132 bp overlap
Nanog 1 dataset
Motif DE_36h DE_36h-Nanog_MA2339.1 7 bp overlap
Nobox 1 dataset
Motif DE_36h DE_36h-Nobox_MA0125.2 6 bp overlap
OGG1 4 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 804 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 741 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 787 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 706 bp overlap
PBX3 1 dataset
Motif DE_36h DE_36h-PBX3_MA1114.2 11 bp overlap
PCBP1 1 dataset
ChIP K-562 ENCSR052PTN.PCBP1.K-562 212 bp overlap
PKNOX1 1 dataset
Motif DE_36h DE_36h-PKNOX1_MA0782.3 10 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 187 bp overlap
POU1F1 1 dataset
Motif DE_36h DE_36h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif DE_36h DE_36h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif DE_36h DE_36h-POU2F2_MA0507.3 13 bp overlap
POU2F3 1 dataset
Motif DE_36h DE_36h-POU2F3_MA0627.3 9 bp overlap
POU3F1 1 dataset
Motif DE_36h DE_36h-POU3F1_MA0786.2 10 bp overlap
POU3F4 1 dataset
Motif DE_36h DE_36h-POU3F4_MA0789.1 9 bp overlap
POU5F1 5 datasets
ChIP BG03 GSE21614.POU5F1.BG03 166 bp overlap
Motif DE_36h DE_36h-POU5F1_MA1115.2 7 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 951 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 757 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 690 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 930 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 93 bp overlap
RARA 1 dataset
ChIP TSU-1621MT GSE60477.RARA.TSU-1621MT 232 bp overlap
RAX 1 dataset
Motif DE_36h DE_36h-RAX_MA0718.2 6 bp overlap
RELA 3 datasets
ChIP HEK293 GSE89017.RELA.HEK293 523 bp overlap
ChIP HEK293_30_min GSE89017.RELA.HEK293_30_min 371 bp overlap
ChIP HEK293_TNF-30min GSE75562.RELA.HEK293_TNF-30min 229 bp overlap
RNF2 2 datasets
ChIP H1 ENCFF239FFS 199 bp overlap
ChIP H1 ENCFF239FFS 156 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 703 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 796 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 241 bp overlap
SIN3A 3 datasets
ChIP H1 ENCFF042ZSL 521 bp overlap
ChIP H1 ENCFF042ZSL 521 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 126 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 396 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 1213 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 1175 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 1012 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 1213 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 1087 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 1213 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 1207 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 136 bp overlap
SMARCA4 2 datasets
ChIP NSC GSE125033.SMARCA4.NSC 219 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 228 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 194 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 507 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 286 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 878 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 139 bp overlap
SPI1 1 dataset
ChIP macrophage_IFNG GSE47188.SPI1.macrophage_IFNG 211 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 696 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 747 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 655 bp overlap
SUZ12 6 datasets
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 228 bp overlap
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 399 bp overlap
ChIP H1 ENCFF881NFR 1213 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 983 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 364 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 242 bp overlap
TBP 1 dataset
ChIP WA01 ENCSR000ECB.TBP.WA01 243 bp overlap
TCF7 1 dataset
ChIP breast-organoid_BRCA1-mut GSE113909.TCF7.breast-organoid_BRCA1-mut 342 bp overlap
TEAD1 2 datasets
ChIP WTC11 ENCFF502QUV 288 bp overlap
ChIP WTC11 ENCFF502QUV 405 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 307 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 499 bp overlap
TGIF2 1 dataset
ChIP WTC11 ENCFF649SHI 441 bp overlap
TP53 1 dataset
ChIP IMR-90_APO GSE53491.TP53.IMR-90_APO 234 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 712 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 218 bp overlap
TRIM28 2 datasets
ChIP AF22 GSE84259.TRIM28.AF22 854 bp overlap
ChIP HCT-116 GSE72622.TRIM28.HCT-116 231 bp overlap
Tbx6 1 dataset
Motif DE_36h DE_36h-Tbx6_MA1567.3 9 bp overlap
USF1 4 datasets
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 149 bp overlap
ChIP WTC11 ENCFF699QGS 425 bp overlap
ChIP WTC11 ENCFF699QGS 425 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 393 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 261 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 783 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 803 bp overlap
ZNF184 2 datasets
ChIP WTC11 ENCFF352POG 497 bp overlap
ChIP WTC11 ENCFF352POG 497 bp overlap
ZNF711 2 datasets
ChIP HEK293T GSE145160.ZNF711.HEK293T 156 bp overlap
ChIP HEK293T GSE145160.ZNF711.HEK293T 584 bp overlap