chr6 : 1,720,613 – 1,721,074
461 bp 97 TFs 1 linked gene
This 461 bp open chromatin element is linked to GMDS and is bound by 97 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
GMDS 5.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:1,715,613 – 1,726,074
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
97 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP NGP GSE134626.ARID1A.NGP 171 bp overlap
ARID2 1 dataset
ChIP NGP_ARID1A-mut2 GSE134626.ARID2.NGP_ARID1A-mut2 69 bp overlap
BCOR 2 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 148 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 299 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 322 bp overlap
BRD4 7 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 217 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 451 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 64 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 158 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 173 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 422 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 81 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 377 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 79 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 123 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 449 bp overlap
CRX 2 datasets
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 202 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 339 bp overlap
CTCF 1 dataset
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 154 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 318 bp overlap
EBF3_P177L 1 dataset
ChIP SK-N-SH GSE90682.EBF3_P177L.SK-N-SH 146 bp overlap
EP300 1 dataset
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 150 bp overlap
ESR1 1 dataset
ChIP U2OS_10nM-E2-B GSE151039.ESR1.U2OS_10nM-E2-B 210 bp overlap
FEZF1 1 dataset
ChIP HEK293 ENCFF528YED 134 bp overlap
FOXJ3 1 dataset
ChIP SK-N-SH ENCFF124KVL 162 bp overlap
GATA2 5 datasets
ChIP SH-SY5Y ENCFF485YIB 182 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 325 bp overlap
ChIP SK-N-SH ENCFF764OZD 136 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 118 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 227 bp overlap
GATA3 5 datasets
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 78 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 58 bp overlap
ChIP SH-SY5Y ENCFF475HYF 180 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 100 bp overlap
ChIP SK-N-SH ENCFF040SSB 120 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-2 241 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 87 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-2 404 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 461 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 461 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 461 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 461 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 461 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 215 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 384 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 264 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 143 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 177 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 267 bp overlap
ChIP SK-N-SH ENCFF285GEQ 175 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 231 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 428 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 412 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 441 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 107 bp overlap
MAML3 2 datasets
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 149 bp overlap
ChIP SK-N-SH_RA GSE69119.MAML3.SK-N-SH_RA 137 bp overlap
MAZ 2 datasets
ChIP HEK293 GSE76494.MAZ.HEK293 217 bp overlap
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 215 bp overlap
MXI1 1 dataset
ChIP SK-N-SH ENCFF746HVJ 63 bp overlap
MYC 1 dataset
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 100 bp overlap
MYCN 2 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 110 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 193 bp overlap
MZF1 2 datasets
ChIP HEK293 ENCFF683ZWN 421 bp overlap
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 431 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 365 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 172 bp overlap
OSR2 1 dataset
ChIP HEK293 ENCFF875BDB 75 bp overlap
OTX2 2 datasets
ChIP WTC11 ENCFF634NAO 226 bp overlap
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 180 bp overlap
PATZ1 2 datasets
ChIP HEK293 ENCFF016MNJ 183 bp overlap
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 215 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 170 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 95 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 184 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 116 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 461 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 116 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 201 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 301 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 384 bp overlap
PRDM6 3 datasets
ChIP HEK293 ENCFF283AJL 94 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 94 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 56 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 351 bp overlap
RAD21 2 datasets
ChIP SK-N-SH ENCFF747MAS 121 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 64 bp overlap
RARA 1 dataset
ChIP SK-N-SH GSE69119.RARA.SK-N-SH 58 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 108 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 135 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 217 bp overlap
RXRA 1 dataset
ChIP H1 ENCFF570NHK 195 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 350 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 116 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 273 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 111 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 334 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 461 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 461 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 445 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 461 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 411 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 227 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 204 bp overlap
SMARCA4 10 datasets
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 179 bp overlap
ChIP NGP GSE134626.SMARCA4.NGP 180 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 77 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 210 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 143 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 190 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 187 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 192 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 294 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 181 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 461 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 258 bp overlap
SOX2 5 datasets
ChIP H9 GSE46837.SOX2.H9 156 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 188 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 360 bp overlap
ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 212 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 221 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 419 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 158 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 256 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 287 bp overlap
SPI1 1 dataset
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 239 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 359 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 55 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 121 bp overlap
TCF4 1 dataset
ChIP SK-N-SH ENCFF270OWF 96 bp overlap
TCF7L2 2 datasets
ChIP HEK293 ENCFF513JQN 131 bp overlap
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 139 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 111 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 111 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 91 bp overlap
TOX2 1 dataset
ChIP SK-N-SH ENCFF415OYE 86 bp overlap
TP53 1 dataset
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 272 bp overlap
TRIM28 3 datasets
ChIP HEK293 ENCFF582MWI 461 bp overlap
ChIP HEK293 ENCFF582MWI 347 bp overlap
ChIP HEK293 ENCSR000EUZ.TRIM28.HEK293 335 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH ENCFF182EBB 144 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 232 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 107 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 107 bp overlap
U2AF1 1 dataset
ChIP Hep-G2 GSE120104.U2AF1.Hep-G2 248 bp overlap
WT1 1 dataset
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 122 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 381 bp overlap
ZBTB44 1 dataset
ChIP HEK293 ENCFF560VPN 99 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCFF847JIE 155 bp overlap
ZMYND8 1 dataset
ChIP HEK293 GSE81696.ZMYND8.HEK293 231 bp overlap
ZNF18 2 datasets
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 337 bp overlap
ChIP HEK293 GSE76494.ZNF18.HEK293 159 bp overlap
ZNF263 2 datasets
ChIP HEK293 ENCFF336CWQ 305 bp overlap
ChIP HEK293 ENCFF336CWQ 99 bp overlap
ZNF317 2 datasets
ChIP HEK293 GSE76494.ZNF317.HEK293 121 bp overlap
ChIP HEK293 GSE76494.ZNF317.HEK293 135 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 461 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 284 bp overlap
ZNF341 3 datasets
ChIP HEK293 ENCFF944VMC 229 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 409 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 212 bp overlap
ZNF366 1 dataset
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 350 bp overlap
ZNF398 3 datasets
ChIP H9 GSE133630.ZNF398.H9 154 bp overlap
ChIP HEK293 ENCFF184XEW 417 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 283 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 144 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 146 bp overlap
ZNF573 1 dataset
ChIP HEK293T GSE78099.ZNF573.HEK293T 169 bp overlap
ZNF580 1 dataset
ChIP HEK293 ENCSR668HOP.ZNF580.HEK293 217 bp overlap
ZNF596 2 datasets
ChIP HEK293 ENCFF854MGB 262 bp overlap
ChIP HEK293 ENCSR344SBD.ZNF596.HEK293 219 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 383 bp overlap
ZNF610 2 datasets
ChIP HEK293 ENCFF778UKJ 278 bp overlap
ChIP HEK293 ENCSR691TXI.ZNF610.HEK293 319 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 461 bp overlap
ZNF843 2 datasets
ChIP HEK293 ENCFF241QRH 153 bp overlap
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 53 bp overlap
Huangfu Lab · Publications · Resources · Contact