chr1 : 101,846,761 101,847,323
562 bp 137 TFs 0 linked genes
This 562 bp open chromatin element has no linked target genes and is bound by 137 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:101,841,761 – 101,852,323
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
137 transcription factors
Source
Cell type
ALX3 1 dataset
Motif DE_12h DE_12h-ALX3_MA0634.2 6 bp overlap
ARID2 1 dataset
ChIP NGP_ARID1A-mut2 GSE134626.ARID2.NGP_ARID1A-mut2 345 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 562 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 505 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 234 bp overlap
Ahr::Arnt 2 datasets
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_36h DE_36h-AhrArnt_MA0006.2 5 bp overlap
BCL6B 1 dataset
Motif DE_12h DE_12h-BCL6B_MA0731.1 17 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 385 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 196 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 389 bp overlap
BRD2 1 dataset
ChIP HUVEC-C GSE60171.BRD2.HUVEC-C 195 bp overlap
BRD4 10 datasets
ChIP BE2C GSE80151.BRD4.BE2C 395 bp overlap
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 207 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 136 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 535 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 324 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 395 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 562 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 562 bp overlap
ChIP hESC GSE33281.BRD4.hESC 75 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 435 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 231 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 106 bp overlap
CREB3L1 2 datasets
Motif DE_12h DE_12h-CREB3L1_MA0839.2 13 bp overlap
Motif DE_36h DE_36h-CREB3L1_MA0839.2 13 bp overlap
CTCF 21 datasets
ChIP A-673 ENCSR611JJS.CTCF.A-673 324 bp overlap
ChIP A673 ENCFF123WOM 382 bp overlap
ChIP BE2C ENCFF757SRF 317 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 213 bp overlap
ChIP H9 ENCFF152GTF 398 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 111 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 232 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 208 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 186 bp overlap
ChIP endodermal cell ENCFF471YCZ 425 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 192 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 244 bp overlap
ChIP islet ERP004003.CTCF.islet 150 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 174 bp overlap
ChIP neural progenitor cell ENCFF420RBO 365 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 127 bp overlap
ChIP retina_AB1-FW14 GSE86981.CTCF.retina_AB1-FW14 333 bp overlap
ChIP retina_AB1-FW16 GSE86981.CTCF.retina_AB1-FW16 337 bp overlap
ChIP retina_AB1-FW23 GSE86981.CTCF.retina_AB1-FW23 256 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 324 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 370 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF274GAT 399 bp overlap
ChIP BLaER1 ENCFF364PUR 308 bp overlap
DRGX 1 dataset
Motif DE_12h DE_12h-DRGX_MA1481.2 6 bp overlap
E2F4 2 datasets
Motif DE_12h DE_12h-E2F4_MA0470.3 13 bp overlap
Motif DE_36h DE_36h-E2F4_MA0470.3 13 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 309 bp overlap
EBF1 1 dataset
ChIP ASC GSE54889.EBF1.ASC 131 bp overlap
EGR1 1 dataset
ChIP fibroblast_DOX-24h GSE134924.EGR1.fibroblast_DOX-24h 217 bp overlap
EMX1 1 dataset
Motif DE_12h DE_12h-EMX1_MA0612.3 6 bp overlap
EMX2 1 dataset
Motif DE_12h DE_12h-EMX2_MA0886.2 6 bp overlap
EN1 1 dataset
Motif DE_12h DE_12h-EN1_MA0027.3 6 bp overlap
EVX1 1 dataset
Motif DE_12h DE_12h-EVX1_MA0887.2 6 bp overlap
EVX2 1 dataset
Motif DE_12h DE_12h-EVX2_MA0888.2 6 bp overlap
EZH2 3 datasets
ChIP LNCaP GSE39459.EZH2.LNCaP 183 bp overlap
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 126 bp overlap
ChIP prostate-cancer_plko GSE107780.EZH2.prostate-cancer_plko 281 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 323 bp overlap
GATA1 1 dataset
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 55 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 211 bp overlap
GATA3 2 datasets
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 167 bp overlap
ChIP thymocyte GSE71751.GATA3.thymocyte 155 bp overlap
GSX1 1 dataset
Motif DE_12h DE_12h-GSX1_MA0892.2 6 bp overlap
GSX2 1 dataset
Motif DE_12h DE_12h-GSX2_MA0893.3 7 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 253 bp overlap
Gfi1B 1 dataset
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 430 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 313 bp overlap
HMBOX1 1 dataset
Motif DE_12h DE_12h-HMBOX1_MA0895.2 7 bp overlap
HOXA1 1 dataset
Motif DE_12h DE_12h-HOXA1_MA1495.2 6 bp overlap
HOXA2 1 dataset
Motif DE_12h DE_12h-HOXA2_MA0900.3 6 bp overlap
HOXA3 1 dataset
Motif DE_12h DE_12h-HOXA3_MA2119.1 7 bp overlap
HOXA6 1 dataset
Motif DE_12h DE_12h-HOXA6_MA1497.2 7 bp overlap
HOXB1 1 dataset
Motif DE_12h DE_12h-HOXB1_MA2093.1 7 bp overlap
HOXB2 1 dataset
Motif DE_12h DE_12h-HOXB2_MA0902.3 6 bp overlap
HOXB3 1 dataset
Motif DE_12h DE_12h-HOXB3_MA0903.2 6 bp overlap
HOXB4 2 datasets
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
Motif DE_36h DE_36h-HOXB4_MA1499.2 6 bp overlap
HOXB5 1 dataset
Motif DE_12h DE_12h-HOXB5_MA0904.3 6 bp overlap
HOXB6 1 dataset
Motif DE_12h DE_12h-HOXB6_MA1500.2 7 bp overlap
HOXB7 1 dataset
Motif DE_12h DE_12h-HOXB7_MA1501.2 7 bp overlap
HOXB8 1 dataset
Motif DE_12h DE_12h-HOXB8_MA1502.2 7 bp overlap
HOXC4 2 datasets
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
Motif DE_36h DE_36h-HOXC4_MA1504.2 6 bp overlap
HOXC8 1 dataset
Motif DE_12h DE_12h-HOXC8_MA1505.2 6 bp overlap
HOXD3 2 datasets
Motif DE_12h DE_12h-HOXD3_MA0912.2 8 bp overlap
Motif DE_36h DE_36h-HOXD3_MA0912.2 8 bp overlap
HOXD4 2 datasets
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
Motif DE_36h DE_36h-HOXD4_MA1507.2 6 bp overlap
HOXD8 1 dataset
Motif DE_12h DE_12h-HOXD8_MA0910.3 7 bp overlap
IFNA1 1 dataset
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 269 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 461 bp overlap
ISX 1 dataset
Motif DE_12h DE_12h-ISX_MA0654.2 6 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 175 bp overlap
KDM4A 3 datasets
ChIP H1 ENCFF078LED 540 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 431 bp overlap
ChIP hiPSC_IID12 GSE106870.KDM4A.hiPSC_IID12 301 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 200 bp overlap
KLF11 2 datasets
Motif DE_12h DE_12h-KLF11_MA1512.2 10 bp overlap
Motif DE_36h DE_36h-KLF11_MA1512.2 10 bp overlap
KLF13 2 datasets
Motif DE_12h DE_12h-KLF13_MA0657.2 17 bp overlap
Motif DE_36h DE_36h-KLF13_MA0657.2 17 bp overlap
LHX5 1 dataset
Motif DE_12h DE_12h-LHX5_MA1519.2 7 bp overlap
Lhx1 1 dataset
Motif DE_12h DE_12h-Lhx1_MA1518.3 10 bp overlap
Lhx4 1 dataset
Motif DE_12h DE_12h-Lhx4_MA0704.2 6 bp overlap
Lhx8 1 dataset
Motif DE_12h DE_12h-Lhx8_MA0705.2 6 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 301 bp overlap
ChIP WTC11 ENCFF223QFY 444 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 233 bp overlap
MEOX1 1 dataset
Motif DE_12h DE_12h-MEOX1_MA0661.2 7 bp overlap
MEOX2 1 dataset
Motif DE_12h DE_12h-MEOX2_MA0706.2 7 bp overlap
MIXL1 1 dataset
Motif DE_12h DE_12h-MIXL1_MA0662.2 6 bp overlap
MNX1 1 dataset
Motif DE_12h DE_12h-MNX1_MA0707.3 6 bp overlap
MYCN 9 datasets
ChIP BE2C GSE80151.MYCN.BE2C 446 bp overlap
ChIP CHP-134 GSE129588.MYCN.CHP-134 458 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 473 bp overlap
ChIP Kelly GSE94782.MYCN.Kelly 130 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 396 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 410 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 436 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 441 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 441 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 436 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 184 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 181 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 308 bp overlap
NEUROG2 1 dataset
ChIP MRC-5_N_05DPT GSE75910.NEUROG2.MRC-5_N_05DPT 219 bp overlap
NFATC4 1 dataset
Motif DE_12h DE_12h-NFATC4_MA1525.3 9 bp overlap
NFE2 1 dataset
Motif DE_12h DE_12h-NFE2_MA0841.2 10 bp overlap
NKX6-2 1 dataset
Motif DE_12h DE_12h-NKX6-2_MA0675.2 6 bp overlap
NOTCH3 1 dataset
ChIP TALL-1_DMSO GSE104261.NOTCH3.TALL-1_DMSO 179 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap
Nr2e3 2 datasets
Motif DE_12h DE_12h-Nr2e3_MA0164.2 6 bp overlap
Motif DE_12h DE_12h-Nr2e3_MA0164.2 6 bp overlap
PAX5 2 datasets
Motif DE_12h DE_12h-PAX5_MA0014.4 8 bp overlap
Motif DE_36h DE_36h-PAX5_MA0014.4 8 bp overlap
PDX1 3 datasets
Motif DE_12h DE_12h-PDX1_MA0132.3 6 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 345 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 223 bp overlap
PHOX2B 1 dataset
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 343 bp overlap
POLR2A 1 dataset
ChIP H1 ENCFF566JSR 562 bp overlap
POU5F1 3 datasets
ChIP BG03 GSE21614.POU5F1.BG03 267 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 391 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 149 bp overlap
POU6F1 3 datasets
Motif DE_12h DE_12h-POU6F1_MA0628.2 6 bp overlap
Motif DE_12h DE_12h-POU6F1_MA1549.2 7 bp overlap
Motif DE_36h DE_36h-POU6F1_MA1549.2 7 bp overlap
POU6F2 2 datasets
Motif DE_12h DE_12h-POU6F2_MA0793.2 9 bp overlap
Motif DE_36h DE_36h-POU6F2_MA0793.2 9 bp overlap
PRRX1 1 dataset
Motif DE_12h DE_12h-PRRX1_MA0716.2 6 bp overlap
Pgr 1 dataset
Motif DE_12h DE_12h-Pgr_MA2323.1 17 bp overlap
RAD21 1 dataset
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 164 bp overlap
RAX2 1 dataset
Motif DE_12h DE_12h-RAX2_MA0717.2 6 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 356 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
REST 1 dataset
Motif DE_12h DE_12h-REST_MA0138.3 20 bp overlap
RFX1 2 datasets
Motif DE_12h DE_12h-RFX1_MA0509.3 16 bp overlap
Motif DE_36h DE_36h-RFX1_MA0509.3 16 bp overlap
RFX2 2 datasets
Motif DE_12h DE_12h-RFX2_MA0600.3 14 bp overlap
Motif DE_36h DE_36h-RFX2_MA0600.3 14 bp overlap
RFX3 2 datasets
Motif DE_12h DE_12h-RFX3_MA0798.3 16 bp overlap
Motif DE_36h DE_36h-RFX3_MA0798.3 16 bp overlap
RFX5 3 datasets
Motif DE_12h DE_12h-RFX5_MA0510.3 14 bp overlap
Motif DE_12h DE_12h-RFX5_MA0510.3 14 bp overlap
Motif DE_36h DE_36h-RFX5_MA0510.3 14 bp overlap
SHOX 1 dataset
Motif DE_12h DE_12h-SHOX_MA0630.2 6 bp overlap
SIN3A 1 dataset
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 210 bp overlap
SIX1 1 dataset
Motif DE_12h DE_12h-SIX1_MA1118.2 9 bp overlap
SIX2 4 datasets
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
ChIP HEK GSE73865.SIX2.HEK 421 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 390 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 414 bp overlap
SMARCA4 5 datasets
ChIP NGP GSE134626.SMARCA4.NGP 190 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 217 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 154 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 151 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 391 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 252 bp overlap
SP3 2 datasets
Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap
Motif DE_36h DE_36h-SP3_MA0746.3 11 bp overlap
SP5 3 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
SP9 2 datasets
Motif DE_12h DE_12h-SP9_MA1564.2 10 bp overlap
Motif DE_36h DE_36h-SP9_MA1564.2 10 bp overlap
SS18 1 dataset
ChIP Aska-SS GSE108025.SS18.Aska-SS 328 bp overlap
Shox2 1 dataset
Motif DE_12h DE_12h-Shox2_MA0720.2 6 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 200 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 291 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 400 bp overlap
TEAD4 3 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 114 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 114 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 295 bp overlap
TFCP2 1 dataset
Motif DE_12h DE_12h-TFCP2_MA1968.2 9 bp overlap
TLX2 1 dataset
Motif DE_12h DE_12h-TLX2_MA1577.2 6 bp overlap
UNCX 1 dataset
Motif DE_12h DE_12h-UNCX_MA0721.2 6 bp overlap
VAX2 1 dataset
Motif DE_12h DE_12h-VAX2_MA0723.3 6 bp overlap
VENTX 2 datasets
Motif DE_12h DE_12h-VENTX_MA0724.1 9 bp overlap
Motif DE_36h DE_36h-VENTX_MA0724.1 9 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 186 bp overlap
ZBTB6 1 dataset
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
ZIC5 2 datasets
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
Motif DE_36h DE_36h-ZIC5_MA1584.2 15 bp overlap
ZNF136 1 dataset
Motif DE_12h DE_12h-ZNF136_MA1588.1 15 bp overlap
ZNF148 2 datasets
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
Motif DE_36h DE_36h-ZNF148_MA1653.2 10 bp overlap
ZNF274 1 dataset
Motif DE_12h DE_12h-ZNF274_MA1592.2 12 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF573 1 dataset
ChIP HEK293T GSE78099.ZNF573.HEK293T 389 bp overlap
ZNF677 1 dataset
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
ZNF736 1 dataset
ChIP HEK293T GSE78099.ZNF736.HEK293T 154 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
mix-a 1 dataset
Motif DE_12h DE_12h-mix-a_MA0621.2 7 bp overlap