chr5 : 146,026,278 146,026,799
521 bp 138 TFs 5 linked genes
This 521 bp open chromatin element is linked to 5 target genes and is bound by 138 transcription factors.
Linked Genes
5 genes
Gene Expression Dist. to TSS Distance Link type
PLAC8L1 79.1 kb Distal Multiome
SH3RF2 89.9 kb Distal Multiome
LARS1 156.1 kb Distal Multiome
RBM27 177.1 kb Distal Multiome
PRELID2 191.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:146,021,278 – 146,031,799
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
138 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 402 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 189 bp overlap
ATF2 2 datasets
ChIP WA01 ENCSR000BQU.ATF2.WA01 327 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 86 bp overlap
Alx4 1 dataset
Motif ES_0h ES_0h-Alx4_MA0853.2 12 bp overlap
Arid3a 1 dataset
Motif ES_0h ES_0h-Arid3a_MA0151.1 6 bp overlap
Arx 2 datasets
Motif ES_0h ES_0h-Arx_MA0874.2 10 bp overlap
Motif ES_0h ES_0h-Arx_MA0874.2 10 bp overlap
BACH1 1 dataset
Motif ES_0h ES_0h-BACH1_MA1633.2 9 bp overlap
BACH2 1 dataset
Motif ES_0h ES_0h-BACH2_MA1101.3 11 bp overlap
BARX1 1 dataset
Motif ES_0h ES_0h-BARX1_MA0875.2 6 bp overlap
BCOR 3 datasets
ChIP K-562 ENCSR808AKZ.BCOR.K-562 175 bp overlap
ChIP K562 ENCFF343XWA 245 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 324 bp overlap
BSX 1 dataset
Motif ES_0h ES_0h-BSX_MA0876.2 6 bp overlap
CEBPB 1 dataset
ChIP WA01 ENCSR000EBV.CEBPB.WA01 121 bp overlap
CHD4 2 datasets
ChIP A-549 ENCSR550SCU.CHD4.A-549 67 bp overlap
ChIP keratinocyte_CTR GSE139685.CHD4.keratinocyte_CTR 117 bp overlap
CHD7 2 datasets
ChIP WA01 ENCSR000AVA.CHD7.WA01 521 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 233 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 144 bp overlap
CTCF 2 datasets
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 320 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 238 bp overlap
DLX1 1 dataset
Motif ES_0h ES_0h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif ES_0h ES_0h-DLX6_MA0882.2 6 bp overlap
DMRTC2 1 dataset
Motif ES_0h ES_0h-DMRTC2_MA1479.2 11 bp overlap
Dlx3 1 dataset
Motif ES_0h ES_0h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif ES_0h ES_0h-Dlx4_MA0881.2 6 bp overlap
EN2 1 dataset
Motif ES_0h ES_0h-EN2_MA0642.3 7 bp overlap
EP300 1 dataset
ChIP H1 ENCFF927IYK 297 bp overlap
ESR1 9 datasets
ChIP MCF-7 GSE76893.ESR1.MCF-7 181 bp overlap
ChIP MCF-7_E2 ERP000209.ESR1.MCF-7_E2 112 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 96 bp overlap
ChIP MCF-7_SHCRT_E2 ERP000380.ESR1.MCF-7_SHCRT_E2 117 bp overlap
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 166 bp overlap
ChIP MCF-7_estradiol-Dex_4h GSE99626.ESR1.MCF-7_estradiol-Dex_4h 153 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 127 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 96 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 378 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 521 bp overlap
FOS 1 dataset
Motif ES_0h ES_0h-FOS_MA0476.2 8 bp overlap
FOSL1 1 dataset
Motif ES_0h ES_0h-FOSL1_MA0477.3 9 bp overlap
FOSL2 1 dataset
Motif ES_0h ES_0h-FOSL2_MA0478.2 10 bp overlap
FOXA1 2 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 264 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 287 bp overlap
FOXA2 6 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 239 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 277 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 378 bp overlap
ChIP DE DE-FOXA2-1 296 bp overlap
ChIP DE DE-FOXA2-2 409 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 152 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 355 bp overlap
FOXP1 2 datasets
ChIP H9 GSE31006.FOXP1.H9 174 bp overlap
ChIP H9 GSE31006.FOXP1.H9 132 bp overlap
GATA6 2 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 121 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 158 bp overlap
GBX1 1 dataset
Motif ES_0h ES_0h-GBX1_MA0889.2 7 bp overlap
GBX2 1 dataset
Motif ES_0h ES_0h-GBX2_MA0890.2 6 bp overlap
GFI1 1 dataset
Motif ES_0h ES_0h-GFI1_MA0038.3 11 bp overlap
GTF2I 2 datasets
ChIP K562 ENCFF539BYI 133 bp overlap
ChIP WTC11 ENCFF255XXZ 156 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF353UJQ 328 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 122 bp overlap
HESX1 1 dataset
Motif ES_0h ES_0h-HESX1_MA0894.2 6 bp overlap
HOXA7 1 dataset
Motif ES_0h ES_0h-HOXA7_MA1498.3 6 bp overlap
HOXB4 1 dataset
Motif ES_0h ES_0h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif ES_0h ES_0h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif ES_0h ES_0h-HOXD4_MA1507.2 6 bp overlap
Hmx1 1 dataset
Motif ES_0h ES_0h-Hmx1_MA0896.2 9 bp overlap
Hmx2 1 dataset
Motif ES_0h ES_0h-Hmx2_MA0897.2 15 bp overlap
Hmx3 1 dataset
Motif ES_0h ES_0h-Hmx3_MA0898.2 9 bp overlap
JDP2 1 dataset
Motif ES_0h ES_0h-JDP2_MA0655.1 9 bp overlap
JUN 4 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 328 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 521 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 346 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 521 bp overlap
JUNB 1 dataset
Motif ES_0h ES_0h-JUNB_MA0490.3 9 bp overlap
JUND 2 datasets
Motif ES_0h ES_0h-JUND_MA0491.3 9 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 286 bp overlap
Jun 1 dataset
Motif ES_0h ES_0h-Jun_MA0489.3 8 bp overlap
KDM1A 7 datasets
ChIP H1 ENCFF696SGD 141 bp overlap
ChIP HepG2 ENCFF240UWG 92 bp overlap
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 123 bp overlap
ChIP keratinocyte_diff GSE57702.KDM1A.keratinocyte_diff 89 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 179 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 105 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 142 bp overlap
KLF13 1 dataset
Motif ES_0h ES_0h-KLF13_MA0657.2 17 bp overlap
LBX1 1 dataset
Motif ES_0h ES_0h-LBX1_MA0618.2 7 bp overlap
LBX2 1 dataset
Motif ES_0h ES_0h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif ES_0h ES_0h-LHX2_MA0700.3 6 bp overlap
LHX9 1 dataset
Motif ES_0h ES_0h-LHX9_MA0701.3 7 bp overlap
Lhx1 1 dataset
Motif ES_0h ES_0h-Lhx1_MA1518.3 10 bp overlap
Lhx3 1 dataset
Motif ES_0h ES_0h-Lhx3_MA0135.2 12 bp overlap
MEIS1 1 dataset
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MSC 1 dataset
Motif ES_0h ES_0h-MSC_MA0665.1 10 bp overlap
MSX1 1 dataset
Motif ES_0h ES_0h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif ES_0h ES_0h-MSX2_MA0708.3 6 bp overlap
MYBL1 2 datasets
Motif DE_12h DE_12h-MYBL1_MA0776.1 12 bp overlap
Motif ES_0h ES_0h-MYBL1_MA0776.1 12 bp overlap
MYF6 1 dataset
Motif ES_0h ES_0h-MYF6_MA0667.1 10 bp overlap
Msgn1 2 datasets
Motif DE_12h DE_12h-Msgn1_MA1524.3 10 bp overlap
Motif ES_0h ES_0h-Msgn1_MA1524.3 10 bp overlap
Msx3 1 dataset
Motif ES_0h ES_0h-Msx3_MA0709.2 6 bp overlap
NANOG 12 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 188 bp overlap
ChIP H1 ENCFF747ZPQ 235 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 521 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 277 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 344 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 521 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 459 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 436 bp overlap
ChIP hESC GSE20650.NANOG.hESC 309 bp overlap
ChIP hESC GSE18292.NANOG.hESC 164 bp overlap
ChIP hESC GSE18292.NANOG.hESC 172 bp overlap
NFE2 1 dataset
Motif ES_0h ES_0h-NFE2_MA0841.2 10 bp overlap
NFIA 1 dataset
Motif ES_0h ES_0h-NFIA_MA0670.2 6 bp overlap
NFIC 1 dataset
Motif ES_0h ES_0h-NFIC_MA0161.3 7 bp overlap
NFIL3 1 dataset
Motif ES_0h ES_0h-NFIL3_MA0025.3 9 bp overlap
NFIX 1 dataset
Motif ES_0h ES_0h-NFIX_MA0671.2 6 bp overlap
NFYA 1 dataset
Motif ES_0h ES_0h-NFYA_MA0060.4 8 bp overlap
NKX6-1 1 dataset
Motif ES_0h ES_0h-NKX6-1_MA0674.2 7 bp overlap
Nobox 1 dataset
Motif ES_0h ES_0h-Nobox_MA0125.2 6 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 271 bp overlap
PHOX2B 1 dataset
Motif ES_0h ES_0h-PHOX2B_MA0681.3 12 bp overlap
POU2F1::SOX2 2 datasets
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU5F1 10 datasets
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 521 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 521 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 203 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 249 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 307 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 419 bp overlap
ChIP hiPSC GSE149017.POU5F1.hiPSC 178 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 211 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 338 bp overlap
PRRX2 1 dataset
Motif ES_0h ES_0h-PRRX2_MA0075.4 7 bp overlap
Pou5f1::Sox2 2 datasets
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
RAD21 4 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 521 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 478 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 521 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 383 bp overlap
RAX 1 dataset
Motif ES_0h ES_0h-RAX_MA0718.2 6 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 167 bp overlap
RBM25 3 datasets
ChIP K-562 ENCSR791OZM.RBM25.K-562 241 bp overlap
ChIP K562 ENCFF248CGR 117 bp overlap
ChIP K562 ENCFF957ORK 116 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 194 bp overlap
SMAD2 1 dataset
Motif ES_0h ES_0h-SMAD2_MA1964.2 6 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 317 bp overlap
SMARCA4 3 datasets
ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 177 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 302 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 508 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 425 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 431 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 494 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 472 bp overlap
SOX10 2 datasets
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX18 1 dataset
Motif ES_0h ES_0h-SOX18_MA1563.2 8 bp overlap
SOX2 5 datasets
ChIP H9 GSE46837.SOX2.H9 197 bp overlap
ChIP OSKM GSE81899.SOX2.OSKM 146 bp overlap
ChIP hESC GSE18292.SOX2.hESC 164 bp overlap
ChIP hESC GSE69479.SOX2.hESC 280 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 389 bp overlap
SOX21 2 datasets
Motif ES_0h ES_0h-SOX21_MA0866.1 15 bp overlap
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 347 bp overlap
SOX4 2 datasets
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
Motif ES_0h ES_0h-SOX4_MA0867.3 8 bp overlap
SOX8 1 dataset
Motif ES_0h ES_0h-SOX8_MA0868.3 7 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 249 bp overlap
Sox11 2 datasets
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
Motif ES_0h ES_0h-Sox11_MA0869.3 8 bp overlap
Sox6 2 datasets
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap
Spz1 1 dataset
Motif ES_0h ES_0h-Spz1_MA0111.1 11 bp overlap
Stat4 1 dataset
Motif ES_0h ES_0h-Stat4_MA0518.2 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 207 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 208 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 163 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 276 bp overlap
TEAD4 2 datasets
Motif ES_0h ES_0h-TEAD4_MA0809.3 8 bp overlap
ChIP H1 ENCFF778PAX 215 bp overlap
TEF 1 dataset
Motif ES_0h ES_0h-TEF_MA0843.2 10 bp overlap
Tcf21 1 dataset
Motif ES_0h ES_0h-Tcf21_MA0832.2 10 bp overlap
Wt1 2 datasets
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
Motif ES_0h ES_0h-Wt1_MA1627.2 10 bp overlap
ZBTB32 1 dataset
Motif ES_0h ES_0h-ZBTB32_MA1580.1 10 bp overlap
ZBTB43 1 dataset
ChIP WTC11 ENCFF058JUB 483 bp overlap
ZMYM3 5 datasets
ChIP Hep-G2_AC_JH39-2-2B9 GSE97661.ZMYM3.Hep-G2_AC_JH39-2-2B9 114 bp overlap
ChIP Hep-G2_Ab_JH39-2-2F10 GSE97661.ZMYM3.Hep-G2_Ab_JH39-2-2F10 80 bp overlap
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 157 bp overlap
ChIP K-562_Ab_JH39-2-2F10 GSE97661.ZMYM3.K-562_Ab_JH39-2-2F10 154 bp overlap
ChIP K562 ENCFF361LXT 229 bp overlap
ZNF143 3 datasets
Motif DE_12h DE_12h-ZNF143_MA0088.2 16 bp overlap
Motif ES_0h ES_0h-ZNF143_MA0088.2 16 bp overlap
Motif ES_0h ES_0h-ZNF143_MA0088.2 16 bp overlap
ZNF157 1 dataset
Motif ES_0h ES_0h-ZNF157_MA2331.1 21 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 376 bp overlap
ZNF257 1 dataset
ChIP HEK293T GSE78099.ZNF257.HEK293T 126 bp overlap
ZNF274 2 datasets
Motif DE_12h DE_12h-ZNF274_MA1592.2 12 bp overlap
Motif ES_0h ES_0h-ZNF274_MA1592.2 12 bp overlap
ZNF382 1 dataset
Motif ES_0h ES_0h-ZNF382_MA1594.1 24 bp overlap
ZNF418 1 dataset
Motif ES_0h ES_0h-ZNF418_MA1980.1 15 bp overlap
ZNF629 2 datasets
ChIP Hep-G2 ENCSR363ASY.ZNF629.Hep-G2 213 bp overlap
ChIP HepG2 ENCFF490FFQ 156 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 83 bp overlap
ZSCAN4 1 dataset
Motif ES_0h ES_0h-ZSCAN4_MA1155.1 15 bp overlap
Zfx 2 datasets
Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap
Motif ES_0h ES_0h-Zfx_MA0146.3 10 bp overlap