chr5 : 140,183,071 – 140,183,262
191 bp 95 TFs 1 linked gene
This 191 bp open chromatin element is linked to CYSTM1 and is bound by 95 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CYSTM1 7.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:140,178,071 – 140,188,262
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
95 transcription factors
Source
Cell type
AR 3 datasets
ChIP LNCaP_GFP_Ethanol GSE128883.AR.LNCaP_GFP_Ethanol 156 bp overlap
ChIP VCaP_DHT24H_SHFOXA1 GSE58428.AR.VCaP_DHT24H_SHFOXA1 75 bp overlap
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 191 bp overlap
ARID1B 1 dataset
ChIP K-562 ENCSR822CCM.ARID1B.K-562 155 bp overlap
ARNT 2 datasets
ChIP 501-mel GSE95280.ARNT.501-mel 117 bp overlap
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 102 bp overlap
ATF6 1 dataset
ChIP K562 ENCFF032AOW 178 bp overlap
BRD2 2 datasets
ChIP MV4-11_IBET151_50nM GSE120715.BRD2.MV4-11_IBET151_50nM 119 bp overlap
ChIP THP-1_DMSO GSE138084.BRD2.THP-1_DMSO 154 bp overlap
BRD3 2 datasets
ChIP MV4-11_DMSO GSE120715.BRD3.MV4-11_DMSO 191 bp overlap
ChIP MV4-11_IBET151_50nM GSE120715.BRD3.MV4-11_IBET151_50nM 191 bp overlap
BRD4 13 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 85 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD4.K-562_DMSO-IFNG 191 bp overlap
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD4.K-562_iBET-BD1-IFNG 191 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 191 bp overlap
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 191 bp overlap
ChIP MV4-11-B_DMSO GSE101821.BRD4.MV4-11-B_DMSO 191 bp overlap
ChIP MV4-11_DMSO GSE120715.BRD4.MV4-11_DMSO 181 bp overlap
ChIP MV4-11_DMSO GSE71776.BRD4.MV4-11_DMSO 191 bp overlap
ChIP MV4-11_IBET151_50nM GSE120715.BRD4.MV4-11_IBET151_50nM 144 bp overlap
ChIP MV4-11_SGC GSE71776.BRD4.MV4-11_SGC 182 bp overlap
ChIP THP-1_DMSO GSE138084.BRD4.THP-1_DMSO 191 bp overlap
ChIP THP-1_DMSO-PMA GSE138084.BRD4.THP-1_DMSO-PMA 191 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 191 bp overlap
CHD4 1 dataset
ChIP 501-mel GSE134848.CHD4.501-mel 93 bp overlap
CTBP1 2 datasets
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 191 bp overlap
ChIP K562 ENCFF403WPG 191 bp overlap
CTCF 25 datasets
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 191 bp overlap
ChIP THP-1_PMA_Dex-0h GSE103477.CTCF.THP-1_PMA_Dex-0h 78 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 99 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 90 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 191 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 98 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 65 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 125 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 135 bp overlap
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-120m-Flavo-000m 133 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 127 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 191 bp overlap
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 191 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-0h 86 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-4h 134 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-0h 174 bp overlap
ChIP gastrocnemius-medialis ENCSR071XWO.CTCF.gastrocnemius-medialis 160 bp overlap
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 191 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 191 bp overlap
ChIP heart right ventricle ENCFF577TID 156 bp overlap
ChIP heart_left-ventricle ENCSR718SDR.CTCF.heart_left-ventricle 191 bp overlap
ChIP leukemia_CEBPA-168h GSE142161.CTCF.leukemia_CEBPA-168h 136 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 168 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 136 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.CTCF.peripheral-blood-neutrophil_PMA-1 78 bp overlap
E4F1 1 dataset
ChIP K562 ENCFF622HMZ 83 bp overlap
ELF1 4 datasets
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 137 bp overlap
ChIP K562 ENCFF457KVR 75 bp overlap
ChIP K562 ENCFF886KFV 140 bp overlap
ChIP K562 ENCFF886KFV 191 bp overlap
ELF3 2 datasets
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 61 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 85 bp overlap
ELF4 1 dataset
ChIP K-562 ENCSR638QHV.ELF4.K-562 70 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 186 bp overlap
ESR1 4 datasets
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 122 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 191 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 95 bp overlap
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 163 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 191 bp overlap
ETV5 1 dataset
ChIP K562 ENCFF336FFA 157 bp overlap
GATA1 1 dataset
ChIP K-562 GSE107726.GATA1.K-562 191 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 191 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 191 bp overlap
ChIP DE DE-GATA4-2 191 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 191 bp overlap
ChIP DE DE-GATA6-2 191 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 191 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 191 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 191 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 191 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 191 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 191 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 191 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 191 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 191 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 76 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 191 bp overlap
GMEB1 1 dataset
ChIP K562 ENCFF705LHX 191 bp overlap
HAND2 1 dataset
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 129 bp overlap
HDAC1 2 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 191 bp overlap
ChIP K562 ENCFF968WBH 191 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR893WSB.HDAC2.K-562 143 bp overlap
HDGF 2 datasets
ChIP K-562 ENCSR563YDA.HDGF.K-562 191 bp overlap
ChIP K-562 ENCSR197ALX.HDGF.K-562 191 bp overlap
HMBOX1 3 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 130 bp overlap
ChIP K562 ENCFF055GAZ 191 bp overlap
ChIP K562 ENCFF317JJX 191 bp overlap
HNRNPH1 2 datasets
ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 181 bp overlap
ChIP Hep-G2 GSE120104.HNRNPH1.Hep-G2 157 bp overlap
IKZF1 5 datasets
ChIP GM12878 ENCFF753XDO 191 bp overlap
ChIP GM12878 ENCFF824TGK 191 bp overlap
ChIP K-562 ENCSR395HWC.IKZF1.K-562 191 bp overlap
ChIP K562 ENCFF348IBL 191 bp overlap
ChIP K562 ENCFF771OHZ 191 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 78 bp overlap
JMJD1C 1 dataset
ChIP THP-1 GSE63484.JMJD1C.THP-1 105 bp overlap
JUND 2 datasets
ChIP K-562 ENCSR000EGN.JUND.K-562 174 bp overlap
ChIP K562 ENCFF336RCR 191 bp overlap
KDM1A 1 dataset
ChIP K-562 GSE117944.KDM1A.K-562 134 bp overlap
KLF17 2 datasets
ChIP HEK293 ENCFF658MHR 141 bp overlap
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 60 bp overlap
KLF6 1 dataset
ChIP K-562 ENCSR297CGF.KLF6.K-562 191 bp overlap
KMT2B 1 dataset
ChIP AML_OG86 GSE112074.KMT2B.AML_OG86 167 bp overlap
LCOR 1 dataset
ChIP K562 ENCFF340MHH 159 bp overlap
MAX 1 dataset
ChIP K-562 ENCSR000EFV.MAX.K-562 163 bp overlap
MAZ 2 datasets
ChIP K-562 ENCSR000EFX.MAZ.K-562 188 bp overlap
ChIP K562 ENCFF809XHP 191 bp overlap
MED1 4 datasets
ChIP HCT-116_thaps GSE121798.MED1.HCT-116_thaps 145 bp overlap
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 174 bp overlap
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 136 bp overlap
ChIP cardiomyocyte_5 GSE85628.MED1.cardiomyocyte_5 91 bp overlap
MED26 1 dataset
ChIP U2OS_SHCTR GSE73742.MED26.U2OS_SHCTR 97 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 191 bp overlap
MTA2 1 dataset
ChIP K-562 ENCSR411UYA.MTA2.K-562 191 bp overlap
MTA3 2 datasets
ChIP K-562 ENCSR914NEI.MTA3.K-562 128 bp overlap
ChIP K-562 ENCSR180NCY.MTA3.K-562 148 bp overlap
MYB 2 datasets
ChIP THP-1 GSE90769.MYB.THP-1 57 bp overlap
ChIP THP-1_OG86 GSE90769.MYB.THP-1_OG86 167 bp overlap
MYCN 1 dataset
ChIP Kelly GSE94822.MYCN.Kelly 73 bp overlap
NEUROD1 1 dataset
ChIP K-562 ENCSR986CDX.NEUROD1.K-562 191 bp overlap
NR2F2 1 dataset
ChIP K-562 ENCSR000BRS.NR2F2.K-562 94 bp overlap
PGR 1 dataset
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 191 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 191 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 159 bp overlap
POLR2A 4 datasets
ChIP gastroesophageal sphincter ENCFF070PCA 75 bp overlap
ChIP spleen ENCFF044PYR 61 bp overlap
ChIP transverse colon ENCFF193UMS 77 bp overlap
ChIP upper lobe of left lung ENCFF640VPA 162 bp overlap
PRDM1 2 datasets
ChIP HEK293 ENCFF302TBP 191 bp overlap
ChIP HEK293 GSE76494.PRDM1.HEK293 74 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 61 bp overlap
RAD21 5 datasets
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 102 bp overlap
ChIP THP-1 GSE55407.RAD21.THP-1 145 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-030m-Flavo-000m 167 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-360m-Flavo-240m 190 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.RAD21.peripheral-blood-neutrophil_PMA-1 191 bp overlap
RB1 1 dataset
ChIP K562 ENCFF627ZBG 142 bp overlap
RBM39 2 datasets
ChIP K-562 ENCSR764OXF.RBM39.K-562 78 bp overlap
ChIP K-562 GSE120104.RBM39.K-562 78 bp overlap
RCOR1 2 datasets
ChIP K562 ENCFF216EEJ 191 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 122 bp overlap
REST 1 dataset
ChIP K-562 ENCSR000BMW.REST.K-562 130 bp overlap
RUNX1 2 datasets
ChIP MV4-11 GSE79899.RUNX1.MV4-11 191 bp overlap
ChIP THP-1 GSE79899.RUNX1.THP-1 141 bp overlap
SHOX2 1 dataset
ChIP K-562 ENCSR184IQF.SHOX2.K-562 117 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 191 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 191 bp overlap
SMARCA4 4 datasets
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 191 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 185 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 191 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 191 bp overlap
SMARCE1 1 dataset
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 191 bp overlap
SMC1 1 dataset
ChIP monocyte_IFNg-LPS GSE120943.SMC1.monocyte_IFNg-LPS 191 bp overlap
SMC1A 1 dataset
ChIP monocyte_INFg GSE98367.SMC1A.monocyte_INFg 191 bp overlap
SOX6 2 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 125 bp overlap
ChIP K562 ENCFF059YCJ 191 bp overlap
SPI1 2 datasets
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 191 bp overlap
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 114 bp overlap
SREBP2 1 dataset
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 191 bp overlap
SRF 2 datasets
ChIP K-562 ENCSR582IAO.SRF.K-562 144 bp overlap
ChIP K562 ENCFF766EOO 191 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 163 bp overlap
STAT1 2 datasets
ChIP CD14_INFG GSE43036.STAT1.CD14_INFG 105 bp overlap
ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 72 bp overlap
STAT3 1 dataset
ChIP monocyte_IFNg-LPS GSE120943.STAT3.monocyte_IFNg-LPS 137 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 142 bp overlap
TARDBP 1 dataset
ChIP GM12878 ENCSR412QBS.TARDBP.GM12878 157 bp overlap
TBP 1 dataset
ChIP K-562 GSE55306.TBP.K-562 191 bp overlap
TBX5 3 datasets
ChIP G296S GSE85628.TBX5.G296S 55 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 55 bp overlap
ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 60 bp overlap
TP63 1 dataset
ChIP foreskin GSE126390.TP63.foreskin 67 bp overlap
UBTF 1 dataset
ChIP K-562 ENCSR000EFZ.UBTF.K-562 110 bp overlap
VDR 1 dataset
ChIP THP-1_1d_1-25-OH-2D3 GSE89431.VDR.THP-1_1d_1-25-OH-2D3 191 bp overlap
XRCC5 2 datasets
ChIP K-562 GSE120104.XRCC5.K-562 99 bp overlap
ChIP K562 ENCFF828QYP 191 bp overlap
ZBTB11 1 dataset
ChIP HEK293 ENCFF262GZJ 108 bp overlap
ZBTB2 3 datasets
ChIP K-562 ENCSR230PTV.ZBTB2.K-562 191 bp overlap
ChIP K562 ENCFF290ESQ 191 bp overlap
ChIP K562 ENCFF290ESQ 145 bp overlap
ZBTB7A 2 datasets
ChIP K-562 GSE103445.ZBTB7A.K-562 166 bp overlap
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 191 bp overlap
ZEB2 1 dataset
ChIP K-562 ENCSR004GKA.ZEB2.K-562 191 bp overlap
ZFP69B 1 dataset
ChIP HEK293 ENCSR381VYR.ZFP69B.HEK293 65 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 191 bp overlap
ZKSCAN1 1 dataset
ChIP K-562 ENCSR882ERE.ZKSCAN1.K-562 117 bp overlap
ZNF124 2 datasets
ChIP HepG2 ENCFF764EFJ 191 bp overlap
ChIP HepG2 ENCFF764EFJ 107 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 76 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 67 bp overlap
ZNF592 2 datasets
ChIP K-562 ENCSR249BHQ.ZNF592.K-562 191 bp overlap
ChIP K562 ENCFF547OSS 191 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 170 bp overlap
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