chr5 : 51,465,041 51,465,463
422 bp 104 TFs 0 linked genes
This 422 bp open chromatin element has no linked target genes and is bound by 104 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:51,460,041 – 51,470,463
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
104 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 312 bp overlap
ATRX 2 datasets
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 422 bp overlap
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 331 bp overlap
BNC2 1 dataset
ChIP SK-N-SH ENCFF174EMC 246 bp overlap
BRD2 7 datasets
ChIP HCC1806_BAZ2B_JQ1 GSE116879.BRD2.HCC1806_BAZ2B_JQ1 204 bp overlap
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 377 bp overlap
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 422 bp overlap
ChIP HCC1806_NTsiRNA_JQ1 GSE116879.BRD2.HCC1806_NTsiRNA_JQ1 159 bp overlap
ChIP MDA-MB-231_BAZ2AsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2AsiRNA 215 bp overlap
ChIP MDA-MB-231_BAZ2BsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2BsiRNA 339 bp overlap
ChIP MDA-MB-231_NTsiRNA GSE116879.BRD2.MDA-MB-231_NTsiRNA 351 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 352 bp overlap
BRD4 16 datasets
ChIP BE2C GSE80151.BRD4.BE2C 200 bp overlap
ChIP CHL-1 GSE95585.BRD4.CHL-1 280 bp overlap
ChIP HAP1 GSE108387.BRD4.HAP1 305 bp overlap
ChIP HCC1806_100nMtrametinib_24h GSE87418.BRD4.HCC1806_100nMtrametinib_24h 79 bp overlap
ChIP HeLa GSE151038.BRD4.HeLa 161 bp overlap
ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 349 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 207 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 276 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 330 bp overlap
ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 235 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 134 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 200 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 422 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 421 bp overlap
ChIP SUM159PT_100nMtrametinib_8h GSE87418.BRD4.SUM159PT_100nMtrametinib_8h 59 bp overlap
ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 376 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 335 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 344 bp overlap
CREBBP 1 dataset
ChIP MCF-7 ERP000901.CREBBP.MCF-7 147 bp overlap
CTCF 4 datasets
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 250 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 234 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 222 bp overlap
ChIP SK-N-SH ENCSR000BLX.CTCF.SK-N-SH 96 bp overlap
DUX4 2 datasets
Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
DUXA 2 datasets
Motif DE_48h DE_48h-DUXA_MA0884.2 13 bp overlap
Motif DE_60h DE_60h-DUXA_MA0884.2 13 bp overlap
EP300 3 datasets
ChIP SK-N-SH ENCFF829RWA 351 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 339 bp overlap
ChIP SK-N-SH ENCSR000BUA.EP300.SK-N-SH 237 bp overlap
EZH2 1 dataset
ChIP DND41 ENCSR000ASW.EZH2.DND41 239 bp overlap
FOSL2 1 dataset
ChIP SK-N-SH ENCSR000BVB.FOSL2.SK-N-SH 119 bp overlap
FOXJ3 1 dataset
ChIP SK-N-SH ENCFF124KVL 356 bp overlap
GATA1 2 datasets
Motif DE_48h DE_48h-GATA1_MA0035.5 7 bp overlap
Motif DE_60h DE_60h-GATA1_MA0035.5 7 bp overlap
GATA2 4 datasets
ChIP SH-SY5Y ENCFF485YIB 359 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 363 bp overlap
ChIP SK-N-SH ENCFF764OZD 412 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 236 bp overlap
GATA3 2 datasets
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 209 bp overlap
ChIP SK-N-SH ENCFF040SSB 121 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 347 bp overlap
ChIP DE DE-GATA4-2 382 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 366 bp overlap
GATA5 2 datasets
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 362 bp overlap
ChIP DE DE-GATA6-2 356 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 403 bp overlap
ChIP foregut GSE117136.GATA6.foregut 310 bp overlap
GTF2B 1 dataset
ChIP HeLa_ASYNC GSE71848.GTF2B.HeLa_ASYNC 422 bp overlap
Gata3 2 datasets
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 316 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 329 bp overlap
HDAC2 1 dataset
ChIP PC-3 GSE147455.HDAC2.PC-3 123 bp overlap
Hmga1 2 datasets
Motif DE_48h DE_48h-Hmga1_MA2124.1 8 bp overlap
Motif DE_60h DE_60h-Hmga1_MA2124.1 8 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 409 bp overlap
JUND 2 datasets
ChIP SK-N-SH ENCFF971JKN 253 bp overlap
ChIP SK-N-SH ENCSR000BSK.JUND.SK-N-SH 182 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 269 bp overlap
LIN54 2 datasets
Motif DE_48h DE_48h-LIN54_MA0619.2 7 bp overlap
Motif DE_60h DE_60h-LIN54_MA0619.2 7 bp overlap
MAML3 1 dataset
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 291 bp overlap
MAX 2 datasets
ChIP SK-N-SH ENCFF285LXR 216 bp overlap
ChIP SK-N-SH ENCSR000BVD.MAX.SK-N-SH 303 bp overlap
MXI1 1 dataset
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 362 bp overlap
MYB 2 datasets
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
Motif DE_60h DE_60h-MYB_MA0100.4 6 bp overlap
MYCN 5 datasets
ChIP Kelly GSE94822.MYCN.Kelly 260 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 184 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 416 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 271 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 223 bp overlap
Mecom 2 datasets
Motif DE_48h DE_48h-Mecom_MA0029.2 11 bp overlap
Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap
NEUROG2 1 dataset
ChIP MRC-5_N_05DPT GSE75910.NEUROG2.MRC-5_N_05DPT 174 bp overlap
NFIC 1 dataset
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 271 bp overlap
NFRKB 1 dataset
ChIP HEK293T ENCSR997GPO.NFRKB.HEK293T 143 bp overlap
NRF1 1 dataset
ChIP HeLa-S3 GSE108856.NRF1.HeLa-S3 393 bp overlap
PHF19 1 dataset
ChIP DU145_CTR GSE135623.PHF19.DU145_CTR 278 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 422 bp overlap
POLR2A 2 datasets
ChIP HeLa-S3 ENCFF773DNG 354 bp overlap
ChIP SK-N-SH ENCFF683PFH 326 bp overlap
POU4F1 2 datasets
Motif DE_48h DE_48h-POU4F1_MA0790.2 12 bp overlap
Motif DE_60h DE_60h-POU4F1_MA0790.2 12 bp overlap
POU4F2 2 datasets
Motif DE_48h DE_48h-POU4F2_MA0683.2 15 bp overlap
Motif DE_60h DE_60h-POU4F2_MA0683.2 15 bp overlap
POU4F3 2 datasets
Motif DE_48h DE_48h-POU4F3_MA0791.2 12 bp overlap
Motif DE_60h DE_60h-POU4F3_MA0791.2 12 bp overlap
POU6F1 1 dataset
ChIP SK-N-SH ENCFF834EMP 331 bp overlap
PROP1 2 datasets
Motif DE_48h DE_48h-PROP1_MA0715.1 11 bp overlap
Motif DE_60h DE_60h-PROP1_MA0715.1 11 bp overlap
RAD21 3 datasets
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 414 bp overlap
ChIP SK-N-SH ENCFF747MAS 238 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 353 bp overlap
RARA 1 dataset
ChIP SK-N-SH GSE69119.RARA.SK-N-SH 207 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 422 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 185 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 334 bp overlap
REST 2 datasets
ChIP SK-N-SH ENCFF635KBN 256 bp overlap
ChIP neural ENCSR000BTV.REST.neural 250 bp overlap
RUVBL2 3 datasets
ChIP U2OS GSE130602.RUVBL2.U2OS 422 bp overlap
ChIP U2OS_DMSO GSE130507.RUVBL2.U2OS_DMSO 400 bp overlap
ChIP U2OS_cordycepin GSE130507.RUVBL2.U2OS_cordycepin 292 bp overlap
SIN3A 2 datasets
ChIP HUVEC-C GSE103245.SIN3A.HUVEC-C 284 bp overlap
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 319 bp overlap
SIX1 1 dataset
Motif DE_12h DE_12h-SIX1_MA1118.2 9 bp overlap
SIX2 4 datasets
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
ChIP HEK GSE73865.SIX2.HEK 173 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 142 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 171 bp overlap
SMAD2 2 datasets
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
Motif DE_60h DE_60h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 254 bp overlap
SMARCA4 4 datasets
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 306 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 237 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 404 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 167 bp overlap
SMARCC1 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 199 bp overlap
SMC3 1 dataset
ChIP SK-N-SH ENCSR000EHW.SMC3.SK-N-SH 114 bp overlap
SOX10 1 dataset
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 319 bp overlap
SOX18 2 datasets
Motif DE_48h DE_48h-SOX18_MA1563.2 8 bp overlap
Motif DE_60h DE_60h-SOX18_MA1563.2 8 bp overlap
SOX2 1 dataset
ChIP KYSE-70 GSE46837.SOX2.KYSE-70 192 bp overlap
SOX4 3 datasets
Motif DE_48h DE_48h-SOX4_MA0867.3 8 bp overlap
Motif DE_60h DE_60h-SOX4_MA0867.3 8 bp overlap
Motif DE_60h DE_60h-SOX4_MA0867.3 8 bp overlap
SOX8 2 datasets
Motif DE_48h DE_48h-SOX8_MA0868.3 7 bp overlap
Motif DE_60h DE_60h-SOX8_MA0868.3 7 bp overlap
SOX9 2 datasets
Motif DE_48h DE_48h-SOX9_MA0077.2 8 bp overlap
Motif DE_60h DE_60h-SOX9_MA0077.2 8 bp overlap
SP5 2 datasets
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
SRY 2 datasets
Motif DE_48h DE_48h-SRY_MA0084.2 7 bp overlap
Motif DE_60h DE_60h-SRY_MA0084.2 7 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 200 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 200 bp overlap
SUPT5H 1 dataset
ChIP HEK293_PNUTS GSE134198.SUPT5H.HEK293_PNUTS 149 bp overlap
Sox11 1 dataset
Motif DE_60h DE_60h-Sox11_MA0869.3 8 bp overlap
Sox17 2 datasets
Motif DE_48h DE_48h-Sox17_MA0078.3 10 bp overlap
Motif DE_60h DE_60h-Sox17_MA0078.3 10 bp overlap
Sox5 2 datasets
Motif DE_48h DE_48h-Sox5_MA0087.3 8 bp overlap
Motif DE_60h DE_60h-Sox5_MA0087.3 8 bp overlap
Sox6 3 datasets
Motif DE_48h DE_48h-Sox6_MA0515.1 10 bp overlap
Motif DE_60h DE_60h-Sox6_MA0515.1 10 bp overlap
Motif DE_60h DE_60h-Sox6_MA0515.1 10 bp overlap
Sox7 2 datasets
Motif DE_48h DE_48h-Sox7_MA2095.1 10 bp overlap
Motif DE_60h DE_60h-Sox7_MA2095.1 10 bp overlap
TAF1 5 datasets
ChIP H1 ENCFF478SZO 334 bp overlap
ChIP HeLa-S3 ENCSR000BHT.TAF1.HeLa-S3 128 bp overlap
ChIP SK-N-SH ENCFF630ERV 137 bp overlap
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 360 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 265 bp overlap
TCF4 1 dataset
ChIP SK-N-SH ENCFF270OWF 355 bp overlap
TEAD4 1 dataset
ChIP SK-N-SH ENCSR000BUQ.TEAD4.SK-N-SH 142 bp overlap
TOX2 1 dataset
ChIP SK-N-SH ENCFF415OYE 213 bp overlap
TRPS1 2 datasets
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH ENCFF182EBB 381 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 177 bp overlap
USF1 1 dataset
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 119 bp overlap
YY1 8 datasets
ChIP H1 ENCFF524BTL 207 bp overlap
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 286 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 422 bp overlap
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 142 bp overlap
ChIP SK-N-SH ENCFF087JSD 175 bp overlap
ChIP SK-N-SH ENCSR000BSM.YY1.SK-N-SH 315 bp overlap
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 314 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 225 bp overlap
ZBTB32 3 datasets
Motif DE_12h DE_12h-ZBTB32_MA1580.1 10 bp overlap
Motif DE_48h DE_48h-ZBTB32_MA1580.1 10 bp overlap
Motif DE_60h DE_60h-ZBTB32_MA1580.1 10 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH ENCFF981MBE 372 bp overlap
ZHX1 1 dataset
ChIP HeLa-S3 ENCSR855WKQ.ZHX1.HeLa-S3 192 bp overlap
ZKSCAN1 2 datasets
Motif DE_48h DE_48h-ZKSCAN1_MA1585.2 9 bp overlap
Motif DE_60h DE_60h-ZKSCAN1_MA1585.2 9 bp overlap
ZNF214 2 datasets
Motif DE_48h DE_48h-ZNF214_MA1975.2 13 bp overlap
Motif DE_60h DE_60h-ZNF214_MA1975.2 13 bp overlap
ZNF320 2 datasets
Motif DE_48h DE_48h-ZNF320_MA1976.2 20 bp overlap
Motif DE_60h DE_60h-ZNF320_MA1976.2 20 bp overlap
ZNF384 2 datasets
ChIP HEK293T ENCFF019DZX 176 bp overlap
ChIP HEK293T ENCSR882ICT.ZNF384.HEK293T 422 bp overlap
ZNF440 1 dataset
ChIP HEK293T GSE78099.ZNF440.HEK293T 199 bp overlap
ZNF547 1 dataset
Motif DE_60h DE_60h-ZNF547_MA2334.1 13 bp overlap
ZNF582 1 dataset
Motif DE_60h DE_60h-ZNF582_MA1983.2 19 bp overlap
ZNF677 2 datasets
Motif DE_48h DE_48h-ZNF677_MA2101.1 12 bp overlap
Motif DE_60h DE_60h-ZNF677_MA2101.1 12 bp overlap
ZNF707 2 datasets
Motif DE_48h DE_48h-ZNF707_MA1715.1 15 bp overlap
Motif DE_60h DE_60h-ZNF707_MA1715.1 15 bp overlap
ZNF85 2 datasets
Motif DE_48h DE_48h-ZNF85_MA1720.2 12 bp overlap
Motif DE_60h DE_60h-ZNF85_MA1720.2 12 bp overlap
Zic3 1 dataset
Motif DE_60h DE_60h-Zic3_MA0697.3 7 bp overlap