chr1 : 11,045,518 11,045,887
369 bp 84 TFs 1 linked gene
This 369 bp open chromatin element is linked to SRM and is bound by 84 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
SRM 9.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:11,040,518 – 11,050,887
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
84 transcription factors
Source
Cell type
AGO1 2 datasets
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 53 bp overlap
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 254 bp overlap
ARID2 1 dataset
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 360 bp overlap
ASCL1 2 datasets
ChIP NCI-H128 GSE69394.ASCL1.NCI-H128 58 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 71 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 109 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 172 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 212 bp overlap
BRD3 1 dataset
ChIP K-562_iBET-IFNG GSE138084.BRD3.K-562_iBET-IFNG 170 bp overlap
BRD4 3 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 191 bp overlap
ChIP K-562_iBET GSE138084.BRD4.K-562_iBET 252 bp overlap
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD4.K-562_iBET-BD1-IFNG 178 bp overlap
CBFB 1 dataset
ChIP K562 ENCFF145YWG 296 bp overlap
CHD4 1 dataset
ChIP HepG2 ENCFF615GUT 139 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 330 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 299 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 159 bp overlap
E2F6 4 datasets
ChIP H1 ENCFF785DWK 312 bp overlap
ChIP H1 ENCFF785DWK 292 bp overlap
ChIP K-562 ENCSR000EWJ.E2F6.K-562 135 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 208 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 138 bp overlap
EGR1 1 dataset
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 139 bp overlap
ESR1 5 datasets
ChIP Ishikawa_DMSO GSE132426.ESR1.Ishikawa_DMSO 175 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 274 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 178 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 318 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 231 bp overlap
FOXA1 1 dataset
ChIP LS180 GSE140533.FOXA1.LS180 81 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 271 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 216 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 263 bp overlap
HAND2 2 datasets
ChIP Kelly GSE94822.HAND2.Kelly 339 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 123 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 90 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 227 bp overlap
HMGXB4 1 dataset
ChIP WTC11 ENCFF962POR 364 bp overlap
HNRNPL 2 datasets
ChIP Hep-G2 GSE120104.HNRNPL.Hep-G2 112 bp overlap
ChIP Hep-G2 ENCSR315JJE.HNRNPL.Hep-G2 98 bp overlap
HNRNPLL 6 datasets
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 140 bp overlap
ChIP Hep-G2 GSE120104.HNRNPLL.Hep-G2 96 bp overlap
ChIP K-562 GSE120104.HNRNPLL.K-562 75 bp overlap
ChIP K-562 ENCSR112RNT.HNRNPLL.K-562 105 bp overlap
ChIP K562 ENCFF541ZGX 153 bp overlap
ChIP K562 ENCFF541ZGX 361 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 154 bp overlap
ILF3 1 dataset
ChIP K-562 GSE103215.ILF3.K-562 356 bp overlap
JUN 2 datasets
ChIP MDA-BoM-1833_shp27 GSE112444.JUN.MDA-BoM-1833_shp27 81 bp overlap
ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 239 bp overlap
KLF1 1 dataset
ChIP K-562 ENCSR550HCT.KLF1.K-562 329 bp overlap
MAZ 1 dataset
ChIP HepG2 ENCFF068NYH 216 bp overlap
MED1 3 datasets
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 154 bp overlap
ChIP K-562 GSE97661.MED1.K-562 155 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 218 bp overlap
MEIS2 2 datasets
ChIP K-562 ENCSR851BNE.MEIS2.K-562 369 bp overlap
ChIP K562 ENCFF320GSD 204 bp overlap
MNX1 1 dataset
ChIP Hep-G2 ENCSR108MKR.MNX1.Hep-G2 178 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 263 bp overlap
NCAPH2 1 dataset
ChIP HEK293 GSE97540.NCAPH2.HEK293 88 bp overlap
NFAT5 1 dataset
ChIP Hep-G2 ENCSR565BVI.NFAT5.Hep-G2 121 bp overlap
NR2F1 2 datasets
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 368 bp overlap
ChIP K562 ENCFF221HJH 131 bp overlap
NR2F2 2 datasets
ChIP K-562 ENCSR000BRS.NR2F2.K-562 198 bp overlap
ChIP liver ENCSR168SMX.NR2F2.liver 169 bp overlap
NR2F6 1 dataset
ChIP K-562 ENCSR707QWA.NR2F6.K-562 166 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 169 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 95 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 95 bp overlap
OSR2 1 dataset
ChIP HEK293 GSE76494.OSR2.HEK293 120 bp overlap
PBX1 2 datasets
ChIP A-549 ENCSR637RKG.PBX1.A-549 202 bp overlap
ChIP A549 ENCFF475JCE 326 bp overlap
PBX2 6 datasets
ChIP Hep-G2 ENCSR849DFF.PBX2.Hep-G2 142 bp overlap
ChIP HepG2 ENCFF225AJT 250 bp overlap
ChIP K-562 ENCSR263DFP.PBX2.K-562 265 bp overlap
ChIP K-562 ENCSR633EIC.PBX2.K-562 142 bp overlap
ChIP K562 ENCFF286KMN 226 bp overlap
ChIP K562 ENCFF385PDC 214 bp overlap
PBX3 3 datasets
ChIP GM12878 ENCFF285BQQ 191 bp overlap
ChIP GM12878 ENCSR000BGR.PBX3.GM12878 190 bp overlap
ChIP SK-N-SH ENCFF876BMC 248 bp overlap
PDX1 5 datasets
ChIP H9 ERP004206.PDX1.H9 209 bp overlap
ChIP hESC GSE58685.PDX1.hESC 196 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 306 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 369 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 344 bp overlap
PKNOX1 8 datasets
ChIP GM12878 ENCFF589FCY 208 bp overlap
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 273 bp overlap
ChIP HEK293T ENCFF174WDB 203 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 270 bp overlap
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 369 bp overlap
ChIP K562 ENCFF236IUS 369 bp overlap
ChIP MCF-7 ENCFF116OCS 298 bp overlap
ChIP MCF-7 ENCSR986XYK.PKNOX1.MCF-7 270 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 70 bp overlap
POLR2A 1 dataset
ChIP GM23338 ENCFF450WCS 236 bp overlap
POU5F1 1 dataset
ChIP BG03 GSE21614.POU5F1.BG03 212 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 288 bp overlap
RBFOX2 2 datasets
ChIP HepG2 ENCFF554DMZ 143 bp overlap
ChIP HepG2 ENCFF939HTZ 143 bp overlap
RBM39 2 datasets
ChIP Hep-G2 ENCSR339JTP.RBM39.Hep-G2 192 bp overlap
ChIP Hep-G2 GSE120104.RBM39.Hep-G2 192 bp overlap
REST 1 dataset
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 165 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 73 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 63 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 160 bp overlap
SIX1 1 dataset
ChIP Hep-G2 ENCSR561BQM.SIX1.Hep-G2 61 bp overlap
SMARCC1 1 dataset
ChIP SCCOHT-1 GSE117734.SMARCC1.SCCOHT-1 201 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 111 bp overlap
SP1 1 dataset
ChIP Hep-G2 ENCSR460YAM.SP1.Hep-G2 120 bp overlap
SP2 3 datasets
ChIP HEK293 ENCFF181QXT 193 bp overlap
ChIP HEK293 ENCSR807LQP.SP2.HEK293 369 bp overlap
ChIP HEK293 GSE76494.SP2.HEK293 334 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 322 bp overlap
SREBP2 1 dataset
ChIP HCC70 GSE126380.SREBP2.HCC70 152 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 99 bp overlap
SUZ12 1 dataset
ChIP K-562 ENCSR412CTM.SUZ12.K-562 209 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF843TII 83 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 268 bp overlap
TFAP4 1 dataset
ChIP K562 ENCFF727PXG 369 bp overlap
XRCC5 1 dataset
ChIP K-562 GSE120104.XRCC5.K-562 185 bp overlap
ZFP36 1 dataset
ChIP K-562 ENCSR776CYN.ZFP36.K-562 173 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 197 bp overlap
ZHX2 1 dataset
ChIP Hep-G2 ENCSR407BEZ.ZHX2.Hep-G2 136 bp overlap
ZNF768 1 dataset
ChIP HepG2 ENCFF388QCK 67 bp overlap
ZNF770 1 dataset
ChIP HepG2 ENCFF233UVH 92 bp overlap