chr4 : 169,957,652 169,958,206
554 bp 139 TFs 0 linked genes
This 554 bp open chromatin element has no linked target genes and is bound by 139 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:169,952,652 – 169,963,206
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
139 transcription factors
Source
Cell type
ARNT 1 dataset
ChIP HEK293T ENCFF302BEZ 281 bp overlap
Atf3 1 dataset
Motif DE_12h DE_12h-Atf3_MA1988.2 7 bp overlap
BACH1 1 dataset
Motif DE_12h DE_12h-BACH1_MA1633.2 9 bp overlap
BACH2 1 dataset
Motif DE_12h DE_12h-BACH2_MA1101.3 11 bp overlap
BATF 1 dataset
Motif DE_12h DE_12h-BATF_MA1634.2 7 bp overlap
BATF3 1 dataset
Motif DE_12h DE_12h-BATF3_MA0835.3 7 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 219 bp overlap
BNC2 1 dataset
Motif DE_12h DE_12h-BNC2_MA1928.2 7 bp overlap
Bach1::Mafk 2 datasets
Motif DE_12h DE_12h-Bach1Mafk_MA0591.2 12 bp overlap
Motif DE_12h DE_12h-Bach1Mafk_MA0591.2 12 bp overlap
CDK8 1 dataset
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 352 bp overlap
CDX4 1 dataset
Motif DE_12h DE_12h-CDX4_MA1473.2 9 bp overlap
CEBPA 6 datasets
Motif DE_12h DE_12h-CEBPA_MA0102.5 10 bp overlap
ChIP THP-1_1-25D_24h GSE124032.CEBPA.THP-1_1-25D_24h 92 bp overlap
ChIP THP-1_1-25D_8h GSE124032.CEBPA.THP-1_1-25D_8h 135 bp overlap
ChIP THP-1_EtOH_24h GSE124032.CEBPA.THP-1_EtOH_24h 172 bp overlap
ChIP THP-1_EtOH_2h GSE124032.CEBPA.THP-1_EtOH_2h 138 bp overlap
ChIP THP-1_EtOH_8h GSE124032.CEBPA.THP-1_EtOH_8h 148 bp overlap
CEBPD 1 dataset
Motif DE_12h DE_12h-CEBPD_MA0836.3 8 bp overlap
CHD7 2 datasets
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 332 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 386 bp overlap
CREB3L4 1 dataset
Motif DE_12h DE_12h-CREB3L4_MA1474.2 10 bp overlap
CTBP1 2 datasets
ChIP HEK293T ENCFF003PDY 331 bp overlap
ChIP HEK293T ENCSR237TFX.CTBP1.HEK293T 232 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF335XTP 197 bp overlap
ChIP BLaER1 ENCFF896HSY 189 bp overlap
EGR4 1 dataset
Motif DE_12h DE_12h-EGR4_MA0733.2 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 136 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 64 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FLI1 6 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 420 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 400 bp overlap
ChIP A-673_D11 GSE129155.FLI1.A-673_D11 226 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 353 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 374 bp overlap
ChIP SK-N-MC GSE61944.FLI1.SK-N-MC 349 bp overlap
FOS 1 dataset
Motif DE_12h DE_12h-FOS_MA0476.2 8 bp overlap
FOSL1 1 dataset
Motif DE_12h DE_12h-FOSL1_MA0477.3 9 bp overlap
FOSL2 1 dataset
Motif DE_12h DE_12h-FOSL2_MA0478.2 10 bp overlap
GLI3 1 dataset
Motif DE_12h DE_12h-GLI3_MA1491.3 15 bp overlap
GLIS1 1 dataset
Motif DE_12h DE_12h-GLIS1_MA0735.2 15 bp overlap
GLIS2 1 dataset
Motif DE_12h DE_12h-GLIS2_MA0736.1 14 bp overlap
GLIS3 1 dataset
Motif DE_12h DE_12h-GLIS3_MA0737.1 14 bp overlap
Gli1 1 dataset
Motif DE_12h DE_12h-Gli1_MA1990.2 10 bp overlap
Gli2 1 dataset
Motif DE_12h DE_12h-Gli2_MA0734.4 9 bp overlap
HIC1 1 dataset
ChIP HEK293 ENCSR803GYT.HIC1.HEK293 235 bp overlap
HIC2 1 dataset
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
HOXA10 1 dataset
Motif DE_12h DE_12h-HOXA10_MA0899.2 9 bp overlap
HOXB9 1 dataset
Motif DE_12h DE_12h-HOXB9_MA1503.2 9 bp overlap
HOXC10 1 dataset
Motif DE_12h DE_12h-HOXC10_MA0905.2 9 bp overlap
HOXC13 1 dataset
Motif DE_12h DE_12h-HOXC13_MA0907.2 9 bp overlap
HOXC9 1 dataset
Motif DE_12h DE_12h-HOXC9_MA0485.3 9 bp overlap
HOXD10 1 dataset
Motif DE_12h DE_12h-HOXD10_MA1506.2 10 bp overlap
HOXD11 1 dataset
Motif DE_12h DE_12h-HOXD11_MA0908.2 9 bp overlap
HOXD12 1 dataset
Motif DE_12h DE_12h-HOXD12_MA0873.2 10 bp overlap
Hoxa11 1 dataset
Motif DE_12h DE_12h-Hoxa11_MA0911.2 9 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
JDP2 1 dataset
Motif DE_12h DE_12h-JDP2_MA0655.1 9 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 399 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 405 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 451 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 408 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 400 bp overlap
JUNB 1 dataset
Motif DE_12h DE_12h-JUNB_MA0490.3 9 bp overlap
JUND 1 dataset
Motif DE_12h DE_12h-JUND_MA0491.3 9 bp overlap
Jun 1 dataset
Motif DE_12h DE_12h-Jun_MA0489.3 8 bp overlap
KMT2B 1 dataset
ChIP HEK293T_C-term GSE90762.KMT2B.HEK293T_C-term 281 bp overlap
L3MBTL2 1 dataset
ChIP HEK293T ENCFF482NJV 536 bp overlap
MAFF 1 dataset
Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap
MAFK 2 datasets
Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap
ChIP WA01 ENCSR000EBS.MAFK.WA01 125 bp overlap
MAX 1 dataset
ChIP MDA-MB-468 GSE81381.MAX.MDA-MB-468 173 bp overlap
MEIS2 1 dataset
Motif DE_12h DE_12h-MEIS2_MA1640.2 9 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 339 bp overlap
MTF1 1 dataset
Motif DE_12h DE_12h-MTF1_MA0863.1 14 bp overlap
MXI1 1 dataset
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
MYB 1 dataset
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
MYC 1 dataset
ChIP U2OS_SHRCTR GSE77356.MYC.U2OS_SHRCTR 98 bp overlap
Mafb 1 dataset
Motif DE_12h DE_12h-Mafb_MA0117.3 11 bp overlap
Mafg 1 dataset
Motif DE_12h DE_12h-Mafg_MA0659.4 12 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 295 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 251 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 356 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 265 bp overlap
NFE2 1 dataset
Motif DE_12h DE_12h-NFE2_MA0841.2 10 bp overlap
NFE2L2 1 dataset
ChIP A-375_A771726 GSE57431.NFE2L2.A-375_A771726 151 bp overlap
NKX2-2 1 dataset
Motif DE_12h DE_12h-NKX2-2_MA1645.2 8 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap
Nfe2l2 1 dataset
Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap
PBX2 1 dataset
Motif DE_12h DE_12h-PBX2_MA1113.3 9 bp overlap
POU2F2 1 dataset
ChIP HNPC_UNDIF GSE74814.POU2F2.HNPC_UNDIF 126 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 205 bp overlap
POU5F1 1 dataset
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 515 bp overlap
PPARD 1 dataset
Motif DE_12h DE_12h-PPARD_MA1550.2 14 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 380 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 484 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
SETDB1 3 datasets
ChIP HEK293 ENCFF676PLV 554 bp overlap
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 554 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 554 bp overlap
SMAD2 2 datasets
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 299 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 402 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 294 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 431 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 406 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 430 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 408 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 451 bp overlap
SMAD3 3 datasets
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 262 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 248 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 184 bp overlap
SMARCA2 1 dataset
ChIP SK-N-MC_shEWSFLI1 GSE94275.SMARCA2.SK-N-MC_shEWSFLI1 328 bp overlap
SMARCA4 3 datasets
ChIP TTC-549_Dox GSE71504.SMARCA4.TTC-549_Dox 157 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 241 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 225 bp overlap
SMARCC1 4 datasets
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 359 bp overlap
ChIP SK-N-MC_shGFP GSE94275.SMARCC1.SK-N-MC_shGFP 361 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 225 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 191 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 386 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 178 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 243 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 265 bp overlap
TCF4 1 dataset
Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap
TFAP2A 1 dataset
Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap
TFAP2B 1 dataset
Motif DE_12h DE_12h-TFAP2B_MA0812.2 9 bp overlap
TFAP2C 2 datasets
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 269 bp overlap
TFAP2E 1 dataset
Motif DE_12h DE_12h-TFAP2E_MA1569.2 9 bp overlap
TFEB 1 dataset
Motif DE_12h DE_12h-TFEB_MA0692.2 8 bp overlap
TRIM24 2 datasets
ChIP MOLM-13_IACS-9571 GSE100571.TRIM24.MOLM-13_IACS-9571 388 bp overlap
ChIP MOLM-13_dTRIM24 GSE100571.TRIM24.MOLM-13_dTRIM24 444 bp overlap
TRIM28 5 datasets
ChIP HEK293 ENCFF582MWI 506 bp overlap
ChIP HEK293 ENCSR000EUZ.TRIM28.HEK293 417 bp overlap
ChIP HEK293 ENCSR618HNF.TRIM28.HEK293 245 bp overlap
ChIP U2OS ENCSR000EYC.TRIM28.U2OS 245 bp overlap
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 519 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 135 bp overlap
YY1 3 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 343 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 418 bp overlap
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 97 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZFP42 1 dataset
Motif DE_12h DE_12h-ZFP42_MA1651.2 13 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 434 bp overlap
ZIC4 1 dataset
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
ZNF140 4 datasets
Motif DE_12h DE_12h-ZNF140_MA1589.2 19 bp overlap
ChIP HEK293 ENCFF501RUF 337 bp overlap
ChIP HEK293 ENCSR464KFG.ZNF140.HEK293 296 bp overlap
ChIP HEK293 GSE76494.ZNF140.HEK293 318 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF280A 1 dataset
ChIP HEK293 GSE76494.ZNF280A.HEK293 254 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF320 1 dataset
Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap
ZNF343 1 dataset
Motif DE_12h DE_12h-ZNF343_MA1711.2 16 bp overlap
ZNF423 2 datasets
ChIP HEK293 ENCSR477OJI.ZNF423.HEK293 258 bp overlap
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF449 1 dataset
Motif DE_12h DE_12h-ZNF449_MA1656.2 10 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF530 1 dataset
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
ZNF554 1 dataset
ChIP HEK293 GSE76494.ZNF554.HEK293 173 bp overlap
ZNF565 1 dataset
ChIP HEK293T GSE78099.ZNF565.HEK293T 500 bp overlap
ZNF675 1 dataset
Motif DE_12h DE_12h-ZNF675_MA1714.2 19 bp overlap
ZNF680 1 dataset
ChIP HEK293 GSE76494.ZNF680.HEK293 201 bp overlap
ZNF75D 1 dataset
Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap
ZNF770 3 datasets
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
ZSCAN4 1 dataset
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap