chr4 : 96,342,907 – 96,343,749
842 bp 123 TFs 1 linked gene
This 842 bp open chromatin element is linked to UNC5C and is bound by 123 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
UNC5C 794.0 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:96,337,907 – 96,348,749
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
123 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 567 bp overlap
ATF3 1 dataset
ChIP WA01 ENCSR000BKC.ATF3.WA01 129 bp overlap
ATF4 1 dataset
Motif ES_0h ES_0h-ATF4_MA0833.3 10 bp overlap
BARX2 1 dataset
Motif ES_0h ES_0h-BARX2_MA1471.2 9 bp overlap
CBX3 1 dataset
ChIP HCT-116 ENCSR000BUH.CBX3.HCT-116 137 bp overlap
CEBPG 1 dataset
Motif ES_0h ES_0h-CEBPG_MA1636.2 10 bp overlap
CHD7 1 dataset
ChIP H1 ENCFF126NLU 154 bp overlap
CTCF 2 datasets
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 460 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 246 bp overlap
DDX21 2 datasets
ChIP A-375 GSE128080.DDX21.A-375 144 bp overlap
ChIP A-375_1726plus GSE128080.DDX21.A-375_1726plus 168 bp overlap
EP300 3 datasets
ChIP WA01 ENCSR000BKK.EP300.WA01 167 bp overlap
ChIP hESC GSE17917.EP300.hESC 546 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 130 bp overlap
ERF::FOXO1 1 dataset
Motif ES_0h ES_0h-ERFFOXO1_MA1936.2 12 bp overlap
ETS1 2 datasets
ChIP GM23338 ENCFF701IZH 218 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 115 bp overlap
Elf5 1 dataset
Motif ES_0h ES_0h-Elf5_MA0136.4 8 bp overlap
FLI1::FOXI1 1 dataset
Motif ES_0h ES_0h-FLI1FOXI1_MA1950.2 11 bp overlap
FOXA1 1 dataset
Motif ES_0h ES_0h-FOXA1_MA0148.5 8 bp overlap
FOXA2 1 dataset
Motif ES_0h ES_0h-FOXA2_MA0047.4 8 bp overlap
FOXA3 1 dataset
Motif ES_0h ES_0h-FOXA3_MA1683.2 7 bp overlap
FOXC2 1 dataset
Motif ES_0h ES_0h-FOXC2_MA0846.2 11 bp overlap
FOXD1 1 dataset
Motif ES_0h ES_0h-FOXD1_MA0031.2 7 bp overlap
FOXE1 1 dataset
Motif ES_0h ES_0h-FOXE1_MA1487.3 12 bp overlap
FOXF2 1 dataset
Motif ES_0h ES_0h-FOXF2_MA0030.2 9 bp overlap
FOXG1 1 dataset
Motif ES_0h ES_0h-FOXG1_MA0613.1 8 bp overlap
FOXH1 1 dataset
Motif ES_0h ES_0h-FOXH1_MA0479.2 8 bp overlap
FOXI1 1 dataset
Motif ES_0h ES_0h-FOXI1_MA0042.2 7 bp overlap
FOXJ2::ELF1 1 dataset
Motif ES_0h ES_0h-FOXJ2ELF1_MA1952.2 11 bp overlap
FOXK1 1 dataset
Motif ES_0h ES_0h-FOXK1_MA0852.3 7 bp overlap
FOXK2 1 dataset
Motif ES_0h ES_0h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif ES_0h ES_0h-FOXL1_MA0033.2 7 bp overlap
FOXN3 1 dataset
Motif ES_0h ES_0h-FOXN3_MA1489.1 8 bp overlap
FOXO4 1 dataset
Motif ES_0h ES_0h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif ES_0h ES_0h-FOXO6_MA0849.1 7 bp overlap
FOXP1 2 datasets
Motif ES_0h ES_0h-FOXP1_MA0481.4 7 bp overlap
ChIP H9 GSE31006.FOXP1.H9 166 bp overlap
FOXP2 1 dataset
Motif ES_0h ES_0h-FOXP2_MA0593.2 9 bp overlap
FOXP3 1 dataset
Motif ES_0h ES_0h-FOXP3_MA0850.1 7 bp overlap
FOXP4 2 datasets
Motif ES_0h ES_0h-FOXP4_MA2117.1 7 bp overlap
ChIP WTC11 ENCFF708TAF 377 bp overlap
FOXS1 1 dataset
Motif ES_0h ES_0h-FOXS1_MA2118.1 8 bp overlap
Foxf1 1 dataset
Motif ES_0h ES_0h-Foxf1_MA1606.2 7 bp overlap
Foxj2 1 dataset
Motif ES_0h ES_0h-Foxj2_MA0614.1 8 bp overlap
Foxl2 1 dataset
Motif ES_0h ES_0h-Foxl2_MA1607.2 10 bp overlap
Foxo1 1 dataset
Motif ES_0h ES_0h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif ES_0h ES_0h-Foxo3_MA0157.4 7 bp overlap
Foxq1 1 dataset
Motif ES_0h ES_0h-Foxq1_MA0040.2 10 bp overlap
GATA1::TAL1 1 dataset
Motif ES_0h ES_0h-GATA1TAL1_MA0140.3 17 bp overlap
GATA2 2 datasets
ChIP TF1 GSE73207.GATA2.TF1 144 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 61 bp overlap
GATA6 7 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 286 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 311 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 249 bp overlap
Motif ES_0h ES_0h-GATA6_MA1104.3 8 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 323 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 311 bp overlap
ChIP foregut GSE117136.GATA6.foregut 272 bp overlap
Gata3 1 dataset
Motif ES_0h ES_0h-Gata3_MA0037.5 8 bp overlap
HCFC1 2 datasets
ChIP MCF-7 ENCFF595ZTV 251 bp overlap
ChIP MCF-7 ENCSR697CUP.HCFC1.MCF-7 215 bp overlap
HDAC2 2 datasets
ChIP WA01 ENCSR000BNR.HDAC2.WA01 129 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 141 bp overlap
Hic1 1 dataset
Motif ES_0h ES_0h-Hic1_MA0739.2 8 bp overlap
Hoxa13 1 dataset
Motif ES_0h ES_0h-Hoxa13_MA0650.4 8 bp overlap
IKZF1 1 dataset
Motif ES_0h ES_0h-IKZF1_MA1508.2 8 bp overlap
KDM5A 1 dataset
ChIP HCT-116 GSE107221.KDM5A.HCT-116 168 bp overlap
KLF10 1 dataset
ChIP MCF-7 GSE97661.KLF10.MCF-7 143 bp overlap
KLF16 1 dataset
Motif ES_0h ES_0h-KLF16_MA0741.1 11 bp overlap
KLF4 3 datasets
ChIP HAP1 GSE130417.KLF4.HAP1 298 bp overlap
ChIP WA09 GSE105028.KLF4.WA09 486 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 289 bp overlap
MEIS1 1 dataset
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MITF 1 dataset
Motif ES_0h ES_0h-MITF_MA0620.4 10 bp overlap
MLLT1 2 datasets
ChIP GM12878 ENCFF995GXC 186 bp overlap
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 251 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 331 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 751 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 645 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 349 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 781 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 726 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 769 bp overlap
ChIP hESC GSE18292.NANOG.hESC 415 bp overlap
ChIP hESC GSE20650.NANOG.hESC 281 bp overlap
ChIP hESC GSE18292.NANOG.hESC 95 bp overlap
NFATC3 1 dataset
Motif ES_0h ES_0h-NFATC3_MA0625.3 6 bp overlap
NFATC4 1 dataset
Motif ES_0h ES_0h-NFATC4_MA1525.3 9 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 377 bp overlap
NIPBL 2 datasets
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 206 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 186 bp overlap
NKX6-3 1 dataset
Motif ES_0h ES_0h-NKX6-3_MA1530.2 8 bp overlap
Nfatc1 1 dataset
Motif ES_0h ES_0h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 2 datasets
Motif ES_0h ES_0h-Nfatc2_MA0152.3 8 bp overlap
Motif ES_0h ES_0h-Nfatc2_MA0152.3 8 bp overlap
Nr2e3 1 dataset
Motif ES_0h ES_0h-Nr2e3_MA0164.2 6 bp overlap
OLIG3 1 dataset
Motif ES_0h ES_0h-OLIG3_MA0827.1 10 bp overlap
PAX6 1 dataset
Motif ES_0h ES_0h-PAX6_MA0069.1 14 bp overlap
POU2F1::SOX2 1 dataset
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU3F1 1 dataset
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
POU3F3 2 datasets
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
POU5F1 13 datasets
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 763 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 479 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 842 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 255 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 643 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 551 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 328 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 695 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 738 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 457 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 405 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 146 bp overlap
Pgr 1 dataset
Motif ES_0h ES_0h-Pgr_MA2323.1 17 bp overlap
Pou5f1::Sox2 2 datasets
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
RAD21 4 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 763 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 351 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 433 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 501 bp overlap
RAD51 1 dataset
ChIP GM12878 ENCSR482TWQ.RAD51.GM12878 187 bp overlap
REST 1 dataset
Motif ES_0h ES_0h-REST_MA0138.3 20 bp overlap
RUNX1 1 dataset
ChIP SKNO-1 GSE23730.RUNX1.SKNO-1 226 bp overlap
Runx1 1 dataset
Motif ES_0h ES_0h-Runx1_MA0002.3 9 bp overlap
SATB1 1 dataset
Motif ES_0h ES_0h-SATB1_MA1963.2 7 bp overlap
SIX5 3 datasets
ChIP GM12878 ENCSR000BJE.SIX5.GM12878 148 bp overlap
ChIP H1 ENCFF942SOJ 150 bp overlap
ChIP WA01 ENCSR000BIQ.SIX5.WA01 176 bp overlap
SMAD3 3 datasets
ChIP BG03 GSE21614.SMAD3.BG03 152 bp overlap
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 222 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 274 bp overlap
SMARCA4 4 datasets
ChIP WA09 GSE105028.SMARCA4.WA09 779 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 495 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 443 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 674 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 432 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 816 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 319 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 341 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 835 bp overlap
SOX2 3 datasets
ChIP hESC GSE18292.SOX2.hESC 211 bp overlap
ChIP hESC GSE69479.SOX2.hESC 240 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 487 bp overlap
SP1 2 datasets
ChIP HCT-116 ENCSR000BSF.SP1.HCT-116 131 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 426 bp overlap
SP5 1 dataset
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SRF 1 dataset
ChIP HCT-116 ENCSR000BSC.SRF.HCT-116 134 bp overlap
TAF3 1 dataset
ChIP HCT-116 GSE43539.TAF3.HCT-116 141 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 112 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 427 bp overlap
TFAP4 1 dataset
Motif ES_0h ES_0h-TFAP4_MA1570.1 10 bp overlap
TRPS1 1 dataset
Motif ES_0h ES_0h-TRPS1_MA1970.2 8 bp overlap
USF1 12 datasets
ChIP A-549 ENCSR000BJB.USF1.A-549 116 bp overlap
Motif ES_0h ES_0h-USF1_MA0093.4 10 bp overlap
ChIP H1 ENCFF090WVU 158 bp overlap
ChIP HCT-116 ENCSR000BVK.USF1.HCT-116 214 bp overlap
ChIP HCT116 ENCFF330PYP 172 bp overlap
ChIP Ishikawa ENCFF728IEG 122 bp overlap
ChIP Ishikawa ENCSR000BSX.USF1.Ishikawa 172 bp overlap
ChIP SK-N-SH ENCFF967PDP 145 bp overlap
ChIP SK-N-SH ENCSR000BTZ.USF1.SK-N-SH 156 bp overlap
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 184 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 245 bp overlap
ChIP WTC11 ENCFF699QGS 265 bp overlap
USF2 4 datasets
ChIP GM12878 GSE97661.USF2.GM12878 140 bp overlap
ChIP H1 ENCFF434EDF 186 bp overlap
ChIP WA01 ENCSR000ECD.USF2.WA01 128 bp overlap
ChIP WTC11 ENCFF139JAW 192 bp overlap
Wt1 1 dataset
Motif ES_0h ES_0h-Wt1_MA1627.2 10 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 125 bp overlap
ZBTB17 1 dataset
ChIP K562 ENCFF731UTU 290 bp overlap
ZBTB24 1 dataset
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 164 bp overlap
ZKSCAN5 1 dataset
Motif ES_0h ES_0h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF136 1 dataset
Motif ES_0h ES_0h-ZNF136_MA1588.1 15 bp overlap
ZNF140 1 dataset
Motif ES_0h ES_0h-ZNF140_MA1589.2 19 bp overlap
ZNF143 11 datasets
ChIP CUTLL1 GSE29600.ZNF143.CUTLL1 132 bp overlap
ChIP GM12878 ENCSR936XTK.ZNF143.GM12878 174 bp overlap
ChIP GM12878 ENCSR000DZL.ZNF143.GM12878 99 bp overlap
ChIP HeLa GSE39263.ZNF143.HeLa 152 bp overlap
ChIP K-562 ENCSR000EGP.ZNF143.K-562 103 bp overlap
ChIP MCF-7 GSE76454.ZNF143.MCF-7 233 bp overlap
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 223 bp overlap
ChIP WA01 ENCSR000EBW.ZNF143.WA01 155 bp overlap
ChIP WA09 GSE105028.ZNF143.WA09 423 bp overlap
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 284 bp overlap
ChIP WTC11 ENCFF249JUK 290 bp overlap
ZNF184 1 dataset
Motif ES_0h ES_0h-ZNF184_MA2120.1 13 bp overlap
ZNF189 1 dataset
Motif ES_0h ES_0h-ZNF189_MA1725.2 9 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 365 bp overlap
ZNF24 1 dataset
Motif ES_0h ES_0h-ZNF24_MA1124.1 13 bp overlap
ZNF354A 1 dataset
Motif ES_0h ES_0h-ZNF354A_MA1978.2 20 bp overlap
ZNF354C 1 dataset
Motif ES_0h ES_0h-ZNF354C_MA0130.1 6 bp overlap
ZNF410 2 datasets
Motif ES_0h ES_0h-ZNF410_MA0752.2 16 bp overlap
Motif ES_0h ES_0h-ZNF410_MA0752.2 16 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 186 bp overlap
ZNF507 2 datasets
ChIP K-562 ENCSR577KQD.ZNF507.K-562 118 bp overlap
ChIP K562 ENCFF235JOG 173 bp overlap
ZNF547 1 dataset
Motif ES_0h ES_0h-ZNF547_MA2334.1 13 bp overlap
ZNF558 1 dataset
Motif ES_0h ES_0h-ZNF558_MA2335.1 29 bp overlap
ZNF667 1 dataset
Motif ES_0h ES_0h-ZNF667_MA1984.2 11 bp overlap
ZNF677 1 dataset
Motif ES_0h ES_0h-ZNF677_MA2101.1 12 bp overlap
ZNF684 1 dataset
Motif ES_0h ES_0h-ZNF684_MA1600.2 14 bp overlap
ZNF701 1 dataset
Motif ES_0h ES_0h-ZNF701_MA1987.2 17 bp overlap
ZNF708 1 dataset
Motif ES_0h ES_0h-ZNF708_MA1730.2 9 bp overlap
ZSCAN4 1 dataset
Motif ES_0h ES_0h-ZSCAN4_MA1155.1 15 bp overlap
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