chr4 : 80,196,357 – 80,196,578
221 bp 113 TFs 1 linked gene
This 221 bp open chromatin element is linked to PRDM8-AS1 and is bound by 113 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PRDM8-AS1 6.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:80,191,357 – 80,201,578
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
113 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP NGP_ARID1A-mut2 GSE134626.ARID2.NGP_ARID1A-mut2 187 bp overlap
Ascl2 1 dataset
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 221 bp overlap
BHLHE22 1 dataset
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 221 bp overlap
BRD4 6 datasets
ChIP DND41_E GSE54379.BRD4.DND41_E 201 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 159 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 83 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 61 bp overlap
ChIP hESC GSE33281.BRD4.hESC 107 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 207 bp overlap
BRF1 1 dataset
ChIP H9 GSE94418.BRF1.H9 185 bp overlap
CBFA2T2 1 dataset
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 221 bp overlap
CC2D1A 1 dataset
ChIP K-562 ENCSR343IFJ.CC2D1A.K-562 186 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231 GSE112444.CDKN1B.MDA-MB-231 168 bp overlap
CHAMP1 2 datasets
ChIP K-562 ENCSR315NNL.CHAMP1.K-562 221 bp overlap
ChIP K-562 ENCSR065XVO.CHAMP1.K-562 146 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 145 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 221 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 221 bp overlap
CTCF 11 datasets
ChIP HEK293 ENCFF821TIC 221 bp overlap
ChIP HEK293 ENCSR617IFZ.CTCF.HEK293 221 bp overlap
ChIP Kasumi-1_ctrl GSE121280.CTCF.Kasumi-1_ctrl 145 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 129 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF311KBD 174 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF812HQJ 221 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 214 bp overlap
ChIP leukemia_CEBPA-168h GSE142161.CTCF.leukemia_CEBPA-168h 213 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 214 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 201 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 190 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 125 bp overlap
EGR1 1 dataset
ChIP H1 ENCFF451BLH 221 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 160 bp overlap
ERG 1 dataset
ChIP SKNO-1 GSE23730.ERG.SKNO-1 194 bp overlap
ETS1 3 datasets
ChIP GM23338 ENCFF701IZH 221 bp overlap
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 159 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 169 bp overlap
EZH2 13 datasets
ChIP GM23338 ENCFF613YON 169 bp overlap
ChIP GM23338 ENCFF613YON 62 bp overlap
ChIP H1 ENCFF232NZA 221 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 174 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 221 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 142 bp overlap
ChIP astrocyte ENCFF365JTP 50 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 221 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 144 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 221 bp overlap
ChIP keratinocyte ENCFF070STK 221 bp overlap
ChIP neural progenitor cell ENCFF018MKA 165 bp overlap
ChIP neural progenitor cell ENCFF472NFV 221 bp overlap
FERD3L 1 dataset
Motif DE_12h DE_12h-FERD3L_MA1485.1 14 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 221 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 220 bp overlap
FLI1 1 dataset
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 221 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 172 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 138 bp overlap
GATA6 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 221 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 221 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 214 bp overlap
GLIS2 1 dataset
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 53 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 139 bp overlap
HIC1 1 dataset
ChIP HEK293 ENCFF252CFL 174 bp overlap
HOXA3 1 dataset
Motif DE_12h DE_12h-HOXA3_MA2119.1 7 bp overlap
HOXA4 1 dataset
Motif DE_12h DE_12h-HOXA4_MA1496.2 7 bp overlap
HOXA5 1 dataset
Motif DE_12h DE_12h-HOXA5_MA0158.2 8 bp overlap
HOXB4 1 dataset
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
HOXD3 1 dataset
Motif DE_12h DE_12h-HOXD3_MA0912.2 8 bp overlap
HOXD4 1 dataset
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 101 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 181 bp overlap
JARID2 4 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 221 bp overlap
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 221 bp overlap
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 221 bp overlap
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 73 bp overlap
JUN 2 datasets
ChIP ESC S34-ESC-d0-JUN-exp2 183 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 221 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 115 bp overlap
KDM1A 1 dataset
ChIP SKNO-1_RN1 GSE71739.KDM1A.SKNO-1_RN1 65 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 121 bp overlap
KMT2A 4 datasets
ChIP HEK293T_N-term GSE90762.KMT2A.HEK293T_N-term 221 bp overlap
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 184 bp overlap
ChIP HEK293T_N-term_C49 GSE90762.KMT2A.HEK293T_N-term_C49 130 bp overlap
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 221 bp overlap
LDB1 1 dataset
ChIP Kasumi-1_ctrl GSE121280.LDB1.Kasumi-1_ctrl 136 bp overlap
MAX 1 dataset
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 197 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 207 bp overlap
NANOG 3 datasets
ChIP H1 ENCFF747ZPQ 221 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 221 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 190 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 221 bp overlap
NHLH1 1 dataset
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
NHLH2 1 dataset
Motif DE_12h DE_12h-NHLH2_MA1529.2 16 bp overlap
Neurod2 1 dataset
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 221 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 198 bp overlap
POLR2A 2 datasets
ChIP GM23338 ENCFF450WCS 221 bp overlap
ChIP H1 ENCFF833NJP 221 bp overlap
POU1F1 1 dataset
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
POU3F1 1 dataset
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
POU5F1 6 datasets
ChIP BG03 GSE21614.POU5F1.BG03 163 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 141 bp overlap
ChIP GM23338 ENCFF333SNB 221 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 221 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 194 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 195 bp overlap
POU5F1B 1 dataset
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 162 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 169 bp overlap
PRDM14 3 datasets
ChIP NCCIT GSE71675.PRDM14.NCCIT 205 bp overlap
ChIP hESC GSE22767.PRDM14.hESC 221 bp overlap
ChIP hESC GSE138674.PRDM14.hESC 221 bp overlap
RAD21 2 datasets
ChIP neural ENCSR198ZYJ.RAD21.neural 220 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.RAD21.peripheral-blood-neutrophil_PMA-1 204 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 221 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 192 bp overlap
RNF2 3 datasets
ChIP H1 ENCFF239FFS 206 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 221 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 180 bp overlap
RUNX1 1 dataset
ChIP SKNO-1 GSE23730.RUNX1.SKNO-1 77 bp overlap
RUNX3 1 dataset
Motif DE_12h DE_12h-RUNX3_MA0684.3 8 bp overlap
RXRA 1 dataset
ChIP WA01 ENCSR000BJW.RXRA.WA01 109 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 115 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 221 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 199 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 201 bp overlap
SMARCA4 5 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 221 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 152 bp overlap
ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 220 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 221 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 205 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 180 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 106 bp overlap
SNAI2 1 dataset
ChIP RD_shSNAI2 GSE137168.SNAI2.RD_shSNAI2 194 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 169 bp overlap
SREBP2 1 dataset
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 101 bp overlap
SUZ12 4 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 221 bp overlap
ChIP H1 ENCFF881NFR 221 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 221 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 221 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 215 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 205 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 221 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 205 bp overlap
TFAP4 1 dataset
Motif DE_12h DE_12h-TFAP4_MA0691.1 10 bp overlap
TRIM28 1 dataset
ChIP HEK293 ENCFF582MWI 210 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 127 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 152 bp overlap
ZBTB10 1 dataset
ChIP HEK293 ENCSR004PLU.ZBTB10.HEK293 138 bp overlap
ZBTB33 1 dataset
ChIP K562 ENCFF875HLX 221 bp overlap
ZBTB44 2 datasets
ChIP HEK293 ENCFF560VPN 221 bp overlap
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 189 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 221 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 221 bp overlap
ZFP69B 1 dataset
ChIP HEK293 ENCSR381VYR.ZFP69B.HEK293 221 bp overlap
ZKSCAN5 1 dataset
ChIP HEK293T GSE78099.ZKSCAN5.HEK293T 142 bp overlap
ZNF10 1 dataset
ChIP HEK293 ENCSR019WUS.ZNF10.HEK293 216 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 221 bp overlap
ZNF341 2 datasets
ChIP HEK293 ENCFF944VMC 221 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 204 bp overlap
ZNF391 1 dataset
ChIP HEK293 ENCFF835SNY 59 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 176 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 129 bp overlap
ZNF580 1 dataset
ChIP HEK293 ENCSR668HOP.ZNF580.HEK293 129 bp overlap
ZNF629 1 dataset
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 221 bp overlap
ZNF660 2 datasets
ChIP HEK293 ENCFF282RUS 221 bp overlap
ChIP HEK293 ENCSR283DOU.ZNF660.HEK293 77 bp overlap
ZNF770 1 dataset
ChIP HEK293 GSE76494.ZNF770.HEK293 138 bp overlap
ZNF93 2 datasets
Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap
ChIP HEK293T GSE78099.ZNF93.HEK293T 217 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 134 bp overlap
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