chr4 : 41,362,996 41,363,386
390 bp 122 TFs 1 linked gene
This 390 bp open chromatin element is linked to LIMCH1 and is bound by 122 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LIMCH1 2.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:41,357,996 – 41,368,386
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
122 transcription factors
Source
Cell type
AR 2 datasets
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 363 bp overlap
ChIP prostate_1636_T GSE130408.AR.prostate_1636_T 52 bp overlap
ARID1A 1 dataset
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 67 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 302 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 260 bp overlap
ATOH7 1 dataset
Motif ES_0h ES_0h-ATOH7_MA1468.1 10 bp overlap
Atoh1 1 dataset
Motif ES_0h ES_0h-Atoh1_MA1467.3 7 bp overlap
BAF155 1 dataset
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 185 bp overlap
BCL11A 3 datasets
ChIP H1 ENCFF836SSR 177 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 129 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 136 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 390 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 390 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 390 bp overlap
BRD4 14 datasets
ChIP HCC1395 GSE63581.BRD4.HCC1395 109 bp overlap
ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 390 bp overlap
ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.BRD4.LNCaP-clone-FGC_DHT-DMSO 143 bp overlap
ChIP MDA-MB-231_DMSO GSE116879.BRD4.MDA-MB-231_DMSO 129 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD4.MDA-MB-231_DMSO_rDNA 129 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 321 bp overlap
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 271 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 150 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 68 bp overlap
ChIP SUM159PT_DMSO_24h GSE87418.BRD4.SUM159PT_DMSO_24h 127 bp overlap
ChIP SUM159PT_DMSO_24h GSE87418.BRD4.SUM159PT_DMSO_24h 54 bp overlap
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 84 bp overlap
ChIP SUM159PT_Dox_48h GSE87418.BRD4.SUM159PT_Dox_48h 212 bp overlap
ChIP SUM159PT_shMYC_DMSO_48h GSE87418.BRD4.SUM159PT_shMYC_DMSO_48h 390 bp overlap
CEBPB 1 dataset
ChIP WA01 ENCSR000EBV.CEBPB.WA01 196 bp overlap
CHD2 2 datasets
ChIP H1 ENCFF991MKH 289 bp overlap
ChIP WA01 ENCSR000EBT.CHD2.WA01 151 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 390 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 160 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 294 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCFF432ZEW 279 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 199 bp overlap
CTCF 2 datasets
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 330 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF812HQJ 258 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 251 bp overlap
DMRTA2 1 dataset
Motif ES_0h ES_0h-DMRTA2_MA1478.2 6 bp overlap
EGR1 2 datasets
ChIP H1 ENCFF451BLH 261 bp overlap
ChIP WA01 ENCSR000BJA.EGR1.WA01 213 bp overlap
ELF3 1 dataset
ChIP PDAC GSE64557.ELF3.PDAC 297 bp overlap
ELF4 1 dataset
Motif ES_0h ES_0h-ELF4_MA0641.1 12 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 224 bp overlap
ETS1 2 datasets
ChIP GM23338 ENCFF701IZH 309 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 246 bp overlap
EZH2 5 datasets
ChIP GM23338 ENCFF613YON 179 bp overlap
ChIP SF8628 GSE94834.EZH2.SF8628 83 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 285 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 153 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 390 bp overlap
FERD3L 1 dataset
Motif ES_0h ES_0h-FERD3L_MA1485.1 14 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 217 bp overlap
GATA6 4 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 270 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 339 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 390 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 356 bp overlap
HAND2 1 dataset
Motif ES_0h ES_0h-HAND2_MA1638.2 6 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 212 bp overlap
JARID2 3 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 216 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 114 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 291 bp overlap
JUN 3 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 276 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 390 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 377 bp overlap
KDM1A 2 datasets
ChIP H1 ENCFF696SGD 390 bp overlap
ChIP H1 ENCFF696SGD 272 bp overlap
KLF4 1 dataset
ChIP WA09 GSE105028.KLF4.WA09 189 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 314 bp overlap
MAF 1 dataset
Motif ES_0h ES_0h-MAF_MA1520.2 13 bp overlap
MAFA 1 dataset
Motif ES_0h ES_0h-MAFA_MA1521.2 13 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 154 bp overlap
MAFF 1 dataset
ChIP HeLa-S3 ENCSR140DSL.MAFF.HeLa-S3 114 bp overlap
MAFK 2 datasets
ChIP H1 ENCFF854XWE 285 bp overlap
ChIP WA01 ENCSR000EBS.MAFK.WA01 196 bp overlap
MAX 3 datasets
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 202 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 174 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 172 bp overlap
MED1 7 datasets
ChIP SUM159PT_300nMJQ1_24h GSE87418.MED1.SUM159PT_300nMJQ1_24h 59 bp overlap
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 390 bp overlap
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 60 bp overlap
ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 257 bp overlap
ChIP hMSC-TERT4_osteoblast-4H GSE113253.MED1.hMSC-TERT4_osteoblast-4H 128 bp overlap
ChIP hMSC-TERT4_osteoblast-D7 GSE113253.MED1.hMSC-TERT4_osteoblast-D7 186 bp overlap
ChIP hMSC-TERT4_undifferentiated GSE113253.MED1.hMSC-TERT4_undifferentiated 54 bp overlap
MYB 1 dataset
Motif ES_0h ES_0h-MYB_MA0100.4 6 bp overlap
MYCN 1 dataset
ChIP LNCaP_EtOH GSE117304.MYCN.LNCaP_EtOH 213 bp overlap
MZF1 2 datasets
ChIP HEK293 ENCFF683ZWN 209 bp overlap
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 321 bp overlap
Mafg 1 dataset
Motif ES_0h ES_0h-Mafg_MA0659.4 12 bp overlap
Msgn1 1 dataset
Motif ES_0h ES_0h-Msgn1_MA1524.3 10 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 317 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 390 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 382 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 283 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 390 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 390 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 390 bp overlap
ChIP hESC GSE20650.NANOG.hESC 328 bp overlap
ChIP hESC GSE18292.NANOG.hESC 176 bp overlap
NEUROG2 2 datasets
Motif ES_0h ES_0h-NEUROG2_MA0669.1 10 bp overlap
Motif ES_0h ES_0h-NEUROG2_MA1642.2 7 bp overlap
NFE2L2 1 dataset
ChIP BEAS-2B_arsenic GSE145834.NFE2L2.BEAS-2B_arsenic 137 bp overlap
NIPBL 3 datasets
ChIP WA09 GSE105028.NIPBL.WA09 364 bp overlap
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 324 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 305 bp overlap
OLIG1 1 dataset
Motif ES_0h ES_0h-OLIG1_MA0826.1 10 bp overlap
OLIG2 1 dataset
Motif ES_0h ES_0h-OLIG2_MA0678.1 10 bp overlap
OLIG3 1 dataset
Motif ES_0h ES_0h-OLIG3_MA0827.1 10 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 390 bp overlap
POLR2A 3 datasets
ChIP GM23338 ENCFF450WCS 234 bp overlap
ChIP H1 ENCFF833NJP 355 bp overlap
ChIP adrenal gland ENCFF843OBJ 122 bp overlap
POU2F1 1 dataset
Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap
POU2F3 2 datasets
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
POU3F1 1 dataset
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
POU3F4 1 dataset
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
POU5F1 14 datasets
Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap
Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 390 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 367 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 390 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 321 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 317 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 254 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 390 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 390 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 367 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 388 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR362VCG.POU5F1.neuron_bipolar_doxy_4d 139 bp overlap
PRDM14 4 datasets
ChIP NCCIT GSE71675.PRDM14.NCCIT 370 bp overlap
ChIP hESC GSE138674.PRDM14.hESC 390 bp overlap
ChIP hESC GSE22767.PRDM14.hESC 390 bp overlap
ChIP primordial-germ-cell-like-cell GSE138674.PRDM14.primordial-germ-cell-like-cell 376 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 120 bp overlap
Ptf1A 1 dataset
Motif ES_0h ES_0h-Ptf1A_MA1618.2 9 bp overlap
RAD21 6 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 390 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 315 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 389 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 224 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 236 bp overlap
RARA 1 dataset
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 300 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 135 bp overlap
RBPJ 1 dataset
Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap
REST 1 dataset
ChIP A-549 ENCSR000BQP.REST.A-549 184 bp overlap
RFX2 1 dataset
Motif ES_0h ES_0h-RFX2_MA0600.3 14 bp overlap
RFX5 1 dataset
Motif ES_0h ES_0h-RFX5_MA0510.3 14 bp overlap
RNF2 3 datasets
ChIP HUES-64 GSE104059.RNF2.HUES-64 201 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 296 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 390 bp overlap
RPA2_phospho 2 datasets
ChIP HeLa GSE108172.RPA2_phospho.HeLa 233 bp overlap
ChIP HeLa_shTOP1 GSE108172.RPA2_phospho.HeLa_shTOP1 223 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 249 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 297 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 296 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 167 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 198 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 373 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 335 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 237 bp overlap
SMARCA4 5 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 390 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 194 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 151 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 390 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 345 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 390 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 289 bp overlap
SMARCC1 5 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 390 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 75 bp overlap
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 189 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 390 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 341 bp overlap
SOX2 5 datasets
ChIP HNSC GSE69479.SOX2.HNSC 344 bp overlap
ChIP KYSE-70 GSE46837.SOX2.KYSE-70 86 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 163 bp overlap
ChIP hESC GSE69479.SOX2.hESC 222 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 390 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 316 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 306 bp overlap
SP4 3 datasets
ChIP H1 ENCFF473YOB 390 bp overlap
ChIP H1 ENCFF473YOB 245 bp overlap
ChIP WA01 ENCSR000BQV.SP4.WA01 257 bp overlap
SS18 2 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 176 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 198 bp overlap
STAT3 1 dataset
Motif ES_0h ES_0h-STAT3_MA0144.3 9 bp overlap
SUZ12 2 datasets
ChIP hiPSC GSE124903.SUZ12.hiPSC 281 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 259 bp overlap
Sox11 1 dataset
Motif ES_0h ES_0h-Sox11_MA0869.3 8 bp overlap
Stat5b 1 dataset
Motif ES_0h ES_0h-Stat5b_MA1625.2 9 bp overlap
TBP 2 datasets
ChIP HeLa-S3 ENCSR000EDD.TBP.HeLa-S3 220 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 127 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 314 bp overlap
TCF21 1 dataset
Motif ES_0h ES_0h-TCF21_MA1568.2 10 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 361 bp overlap
TEAD1 2 datasets
ChIP WTC11 ENCFF502QUV 369 bp overlap
ChIP adipocyte GSE140782.TEAD1.adipocyte 108 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 243 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 368 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 236 bp overlap
TFAP4 1 dataset
Motif ES_0h ES_0h-TFAP4_MA1570.1 10 bp overlap
TP53 3 datasets
ChIP H9 GSE39912.TP53.H9 226 bp overlap
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 298 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 302 bp overlap
Tcf21 1 dataset
Motif ES_0h ES_0h-Tcf21_MA0832.2 10 bp overlap
UBN1 1 dataset
ChIP HeLa GSE45024.UBN1.HeLa 341 bp overlap
YY1 2 datasets
ChIP Huh-7 GSE97411.YY1.Huh-7 284 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 225 bp overlap
ZNF143 2 datasets
ChIP WA09 GSE105028.ZNF143.WA09 290 bp overlap
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 285 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 278 bp overlap
ZNF281 1 dataset
ChIP WTC11 ENCFF551GAV 373 bp overlap
ZNF324 1 dataset
Motif ES_0h ES_0h-ZNF324_MA1977.2 14 bp overlap
ZNF398 1 dataset
ChIP BG01V GSE133630.ZNF398.BG01V 228 bp overlap
ZNF680 1 dataset
Motif ES_0h ES_0h-ZNF680_MA1729.2 11 bp overlap