chr4 : 20,983,711 – 20,984,794
1,083 bp 117 TFs 1 linked gene
This 1.1 kb open chromatin element is linked to KCNIP4 and is bound by 117 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
KCNIP4 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:20,978,711 – 20,989,794
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
117 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 447 bp overlap
ChIP myofibroblast GSE90772.AR.myofibroblast 646 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 785 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 598 bp overlap
Ar 2 datasets
Motif DE_12h DE_12h-Ar_MA0007.4 16 bp overlap
Motif ES_0h ES_0h-Ar_MA0007.4 16 bp overlap
BACH1 1 dataset
ChIP WA01 ENCSR000EBQ.BACH1.WA01 126 bp overlap
BCL6B 1 dataset
Motif DE_12h DE_12h-BCL6B_MA0731.1 17 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 238 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 606 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 711 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 650 bp overlap
BRD4 7 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 281 bp overlap
ChIP IMR-90_SENES GSE74238.BRD4.IMR-90_SENES 167 bp overlap
ChIP SUM159PT_KO GSE131097.BRD4.SUM159PT_KO 248 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 409 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 167 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 240 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
BRD7 1 dataset
ChIP SUM159PT_DMSO GSE131097.BRD7.SUM159PT_DMSO 202 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 171 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 251 bp overlap
CREBBP_M768 1 dataset
ChIP NCI-H3396_E2 GSE32349.CREBBP_M768.NCI-H3396_E2 98 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 442 bp overlap
CTCF 2 datasets
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 485 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 155 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 283 bp overlap
ChIP BLaER1 ENCFF460KDD 338 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 451 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 333 bp overlap
EGR1 2 datasets
ChIP A-375 GSE116190.EGR1.A-375 447 bp overlap
ChIP A2780_cisplatin GSE129700.EGR1.A2780_cisplatin 163 bp overlap
ESR1 2 datasets
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 273 bp overlap
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 413 bp overlap
ETV2::DRGX 1 dataset
Motif DE_12h DE_12h-ETV2DRGX_MA1940.2 12 bp overlap
ETV5::DRGX 1 dataset
Motif DE_12h DE_12h-ETV5DRGX_MA1944.2 12 bp overlap
EZH2 14 datasets
ChIP LNCaP GSE39459.EZH2.LNCaP 340 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 1071 bp overlap
ChIP VCaP_DHAT_2H GSE28950.EZH2.VCaP_DHAT_2H 639 bp overlap
ChIP VCaP_ETOH GSE28950.EZH2.VCaP_ETOH 226 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 216 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 297 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 319 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 887 bp overlap
ChIP neural progenitor cell ENCFF018MKA 845 bp overlap
ChIP neural progenitor cell ENCFF472NFV 965 bp overlap
ChIP neural progenitor cell ENCFF472NFV 875 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 380 bp overlap
ChIP prostate-cancer_HA GSE107780.EZH2.prostate-cancer_HA 374 bp overlap
ChIP prostate-cancer_plko GSE107780.EZH2.prostate-cancer_plko 311 bp overlap
EZH2_phosphoT487 4 datasets
ChIP PC-3 ENCSR617RSQ.EZH2_phosphoT487.PC-3 478 bp overlap
ChIP PC-3 ENCSR617RSQ.EZH2_phosphoT487.PC-3 374 bp overlap
ChIP PC-9 ENCSR702GMW.EZH2_phosphoT487.PC-9 276 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 993 bp overlap
FEZF2 3 datasets
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
Motif ES_0h ES_0h-FEZF2_MA2341.1 8 bp overlap
FLI1 1 dataset
ChIP HUVEC-C GSE109695.FLI1.HUVEC-C 123 bp overlap
FOSL1 2 datasets
ChIP BT-549 GSE46166.FOSL1.BT-549 187 bp overlap
ChIP BT-549 GSE112961.FOSL1.BT-549 196 bp overlap
FOXA1 3 datasets
Motif ES_0h ES_0h-FOXA1_MA0148.5 8 bp overlap
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 309 bp overlap
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 510 bp overlap
FOXA2 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 262 bp overlap
FOXB1 1 dataset
Motif ES_0h ES_0h-FOXB1_MA0845.1 11 bp overlap
FOXC1 1 dataset
Motif ES_0h ES_0h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif ES_0h ES_0h-FOXC2_MA0846.2 11 bp overlap
FOXO6 1 dataset
Motif ES_0h ES_0h-FOXO6_MA0849.1 7 bp overlap
Foxn1 2 datasets
Motif DE_12h DE_12h-Foxn1_MA1684.1 6 bp overlap
Motif ES_0h ES_0h-Foxn1_MA1684.1 6 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 310 bp overlap
GLIS2 1 dataset
Motif DE_12h DE_12h-GLIS2_MA0736.1 14 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 329 bp overlap
GRHL2 1 dataset
ChIP PEO1 GSE71018.GRHL2.PEO1 147 bp overlap
GSPT2 1 dataset
ChIP HEK293T GSE35197.GSPT2.HEK293T 206 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 420 bp overlap
HDAC2 2 datasets
ChIP WA01 ENCSR000AVB.HDAC2.WA01 139 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 253 bp overlap
HDAC6 1 dataset
ChIP H1 ENCFF799IKG 151 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 370 bp overlap
HNF4A 2 datasets
Motif DE_12h DE_12h-HNF4A_MA0114.5 9 bp overlap
ChIP hiPSC GSE104613.HNF4A.hiPSC 341 bp overlap
HNF4G 1 dataset
Motif DE_12h DE_12h-HNF4G_MA0484.3 9 bp overlap
Hand1 1 dataset
Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap
JARID2 3 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 383 bp overlap
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 195 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 808 bp overlap
JUN 1 dataset
ChIP HUES-8 GSE109524.JUN.HUES-8 501 bp overlap
JUND 1 dataset
ChIP H1 ENCFF010YXS 311 bp overlap
KDM4A 6 datasets
ChIP H1 ENCFF078LED 701 bp overlap
ChIP H1 ENCFF078LED 701 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 613 bp overlap
ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 165 bp overlap
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 190 bp overlap
ChIP hiPSC_IID12 GSE106870.KDM4A.hiPSC_IID12 259 bp overlap
KDM5B 1 dataset
ChIP Hep-G2 ENCSR227MRE.KDM5B.Hep-G2 262 bp overlap
MAFA 3 datasets
Motif DE_12h DE_12h-MAFA_MA1521.2 13 bp overlap
Motif DE_36h DE_36h-MAFA_MA1521.2 13 bp overlap
Motif ES_0h ES_0h-MAFA_MA1521.2 13 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 357 bp overlap
ChIP WTC11 ENCFF223QFY 585 bp overlap
MYC 3 datasets
ChIP CD34 GSE85488.MYC.CD34 113 bp overlap
ChIP P493-6 GSE77061.MYC.P493-6 242 bp overlap
ChIP P493-6_MST-312 GSE77061.MYC.P493-6_MST-312 159 bp overlap
MYCN 2 datasets
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 287 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 327 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 250 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 179 bp overlap
NFIA 1 dataset
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
NFIB 2 datasets
Motif DE_12h DE_12h-NFIB_MA1643.2 17 bp overlap
Motif DE_12h DE_12h-NFIB_MA1643.2 17 bp overlap
NFIX 1 dataset
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
NFKB1 1 dataset
Motif DE_12h DE_12h-NFKB1_MA0105.4 13 bp overlap
NFKB2 1 dataset
Motif DE_12h DE_12h-NFKB2_MA0778.2 11 bp overlap
NKX2-2 1 dataset
Motif ES_0h ES_0h-NKX2-2_MA1645.2 8 bp overlap
Nr2e3 1 dataset
Motif DE_12h DE_12h-Nr2e3_MA0164.2 6 bp overlap
OLIG2 1 dataset
ChIP brain-prefrontal-cortex_2017014 GSE129039.OLIG2.brain-prefrontal-cortex_2017014 241 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 308 bp overlap
PBX1 1 dataset
Motif DE_12h DE_12h-PBX1_MA0070.2 9 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 378 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 363 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 268 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 267 bp overlap
POLR2A 2 datasets
ChIP sigmoid colon ENCFF725QFT 417 bp overlap
ChIP sigmoid colon ENCFF748YVT 445 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 335 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 439 bp overlap
PPARA::RXRA 1 dataset
Motif DE_12h DE_12h-PPARARXRA_MA1148.2 17 bp overlap
Pgr 1 dataset
Motif DE_12h DE_12h-Pgr_MA2323.1 17 bp overlap
Plagl1 1 dataset
Motif DE_12h DE_12h-Plagl1_MA1615.2 8 bp overlap
Pou5f1::Sox2 1 dataset
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 235 bp overlap
RELA 2 datasets
ChIP 786-O GSE86092.RELA.786-O 258 bp overlap
Motif DE_12h DE_12h-RELA_MA0107.1 10 bp overlap
REST 3 datasets
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 129 bp overlap
ChIP neural ENCSR000BTV.REST.neural 197 bp overlap
ChIP neural ENCSR000BTV.REST.neural 292 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 373 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 295 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 247 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 307 bp overlap
SMAD2 1 dataset
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
SMARCA4 4 datasets
ChIP 22Rv1 GSE115615.SMARCA4.22Rv1 302 bp overlap
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 555 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 714 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 226 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 586 bp overlap
SMARCC1 1 dataset
ChIP hiPSC GSE124903.SMARCC1.hiPSC 452 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 588 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d0 282 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 71 bp overlap
SOX2 1 dataset
ChIP RENVM GSE49404.SOX2.RENVM 192 bp overlap
SPI1 1 dataset
ChIP macrophage_IFNG GSE47188.SPI1.macrophage_IFNG 279 bp overlap
SRY 1 dataset
Motif DE_12h DE_12h-SRY_MA0084.2 7 bp overlap
STAT1 1 dataset
Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap
STAT3 1 dataset
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
SUZ12 4 datasets
ChIP LNCaP GSE39459.SUZ12.LNCaP 475 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 210 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 350 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 677 bp overlap
Stat4 1 dataset
Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 118 bp overlap
TET2 1 dataset
ChIP Jurkat_NCKD GSE85524.TET2.Jurkat_NCKD 326 bp overlap
THRB 2 datasets
Motif DE_12h DE_12h-THRB_MA1575.2 17 bp overlap
Motif ES_0h ES_0h-THRB_MA1575.2 17 bp overlap
TP53 2 datasets
ChIP Calu-1_MUT8-COMB GSE128673.TP53.Calu-1_MUT8-COMB 362 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 204 bp overlap
VEZF1 2 datasets
Motif DE_12h DE_12h-VEZF1_MA1578.2 6 bp overlap
Motif ES_0h ES_0h-VEZF1_MA1578.2 6 bp overlap
Wt1 1 dataset
Motif ES_0h ES_0h-Wt1_MA1627.2 10 bp overlap
ZBTB26 1 dataset
Motif ES_0h ES_0h-ZBTB26_MA1579.2 8 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 239 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
ZNF189 1 dataset
Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF407 1 dataset
ChIP Hep-G2 ENCSR005WGY.ZNF407.Hep-G2 348 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 332 bp overlap
ZNF682 1 dataset
Motif DE_12h DE_12h-ZNF682_MA1599.2 11 bp overlap
ZNF768 4 datasets
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
Motif ES_0h ES_0h-ZNF768_MA1731.2 9 bp overlap
ZNF770 1 dataset
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Znf423 1 dataset
Motif DE_12h DE_12h-Znf423_MA0116.1 15 bp overlap
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