chr3 : 190,361,994 190,362,859
865 bp 127 TFs 0 linked genes
This 865 bp open chromatin element has no linked target genes and is bound by 127 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:190,356,994 – 190,367,859
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
127 transcription factors
Source
Cell type
AR 5 datasets
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 118 bp overlap
ChIP VCaP GSE148358.AR.VCaP 67 bp overlap
ChIP prostate-cancer_PDX_35 GSE130408.AR.prostate-cancer_PDX_35 190 bp overlap
ChIP prostate-cancer_PDX_58 GSE130408.AR.prostate-cancer_PDX_58 63 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.AR.prostate-cancer_PDX_92 161 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 603 bp overlap
ChIP H1 ENCFF399KAM 785 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 288 bp overlap
BAF155 1 dataset
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 70 bp overlap
BCL11A 1 dataset
Motif DE_12h DE_12h-BCL11A_MA2324.1 7 bp overlap
BCL6 1 dataset
Motif DE_12h DE_12h-BCL6_MA0463.3 13 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 242 bp overlap
BRD4 1 dataset
ChIP keratinocyte GSE140992.BRD4.keratinocyte 183 bp overlap
CDX1 1 dataset
Motif DE_12h DE_12h-CDX1_MA0878.3 10 bp overlap
CDX4 1 dataset
Motif DE_12h DE_12h-CDX4_MA1473.2 9 bp overlap
CREB5 1 dataset
ChIP LNCaP GSE137775.CREB5.LNCaP 160 bp overlap
CREBBP 1 dataset
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 185 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 244 bp overlap
DMRTA2 1 dataset
Motif DE_12h DE_12h-DMRTA2_MA1478.2 6 bp overlap
DUX4 1 dataset
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
EHF 1 dataset
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
ELF1 1 dataset
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
ELF3 1 dataset
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
ELK4 1 dataset
Motif DE_12h DE_12h-ELK4_MA0076.3 9 bp overlap
ESR1 1 dataset
ChIP MCF-7_jc5852 GSE126004.ESR1.MCF-7_jc5852 192 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
ETV6 1 dataset
Motif DE_12h DE_12h-ETV6_MA0645.2 9 bp overlap
ETV7 1 dataset
Motif DE_12h DE_12h-ETV7_MA1708.2 9 bp overlap
Elf5 1 dataset
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
Erg 1 dataset
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
FOXA1 8 datasets
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 75 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 167 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 100 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 63 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 50 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 101 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 142 bp overlap
ChIP prostate_P7_T GSE130408.FOXA1.prostate_P7_T 111 bp overlap
FOXA2 1 dataset
Motif DE_12h DE_12h-FOXA2_MA0047.4 8 bp overlap
FOXA3 1 dataset
Motif DE_12h DE_12h-FOXA3_MA1683.2 7 bp overlap
FOXB1 1 dataset
Motif DE_12h DE_12h-FOXB1_MA0845.1 11 bp overlap
FOXC1 1 dataset
Motif DE_12h DE_12h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap
FOXD3 1 dataset
Motif DE_12h DE_12h-FOXD3_MA0041.3 14 bp overlap
FOXF2 1 dataset
Motif DE_12h DE_12h-FOXF2_MA0030.2 9 bp overlap
FOXI1 1 dataset
Motif DE_12h DE_12h-FOXI1_MA0042.2 7 bp overlap
FOXN3 1 dataset
Motif DE_12h DE_12h-FOXN3_MA1489.1 8 bp overlap
FOXP1 1 dataset
Motif DE_12h DE_12h-FOXP1_MA0481.4 7 bp overlap
FOXP4 1 dataset
Motif DE_12h DE_12h-FOXP4_MA2117.1 7 bp overlap
Foxj3 1 dataset
Motif DE_12h DE_12h-Foxj3_MA0851.2 9 bp overlap
GABPA 1 dataset
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
GATA2 1 dataset
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 62 bp overlap
GRHL1 1 dataset
ChIP MCF-7 GSE140185.GRHL1.MCF-7 158 bp overlap
GRHL2 9 datasets
Motif DE_12h DE_12h-GRHL2_MA1105.3 8 bp overlap
ChIP HBE GSE46194.GRHL2.HBE 145 bp overlap
ChIP LNCaP GSE80256.GRHL2.LNCaP 251 bp overlap
ChIP MCF-7 GSE109820.GRHL2.MCF-7 242 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 219 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 213 bp overlap
ChIP OVCA429 GSE71018.GRHL2.OVCA429 205 bp overlap
ChIP PEO1 GSE71018.GRHL2.PEO1 95 bp overlap
ChIP T-47D GSE99680.GRHL2.T-47D 207 bp overlap
HDAC2 1 dataset
ChIP H1 ENCFF353UJQ 645 bp overlap
HOXA10 1 dataset
Motif DE_12h DE_12h-HOXA10_MA0899.2 9 bp overlap
HOXB13 7 datasets
Motif DE_12h DE_12h-HOXB13_MA0901.3 9 bp overlap
Motif DE_12h DE_12h-HOXB13_MA0901.3 9 bp overlap
ChIP prostate-cancer_PDX_141 GSE130408.HOXB13.prostate-cancer_PDX_141 185 bp overlap
ChIP prostate-cancer_PDX_170-2 GSE130408.HOXB13.prostate-cancer_PDX_170-2 64 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.HOXB13.prostate-cancer_PDX_92 254 bp overlap
ChIP prostate_2480_T GSE130408.HOXB13.prostate_2480_T 134 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 98 bp overlap
HOXD9 1 dataset
Motif DE_12h DE_12h-HOXD9_MA0913.3 9 bp overlap
Hand1 1 dataset
Motif ES_0h ES_0h-Hand1_MA2123.1 9 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
JUN 5 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 414 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 307 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 513 bp overlap
Motif ES_0h ES_0h-JUN_MA0488.2 10 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 487 bp overlap
JUND 1 dataset
Motif ES_0h ES_0h-JUND_MA0492.2 11 bp overlap
KLF4 1 dataset
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 96 bp overlap
LIN54 1 dataset
Motif DE_12h DE_12h-LIN54_MA0619.2 7 bp overlap
Lhx3 1 dataset
Motif DE_12h DE_12h-Lhx3_MA0135.2 12 bp overlap
MAF 1 dataset
Motif DE_12h DE_12h-MAF_MA1520.2 13 bp overlap
MAFA 1 dataset
Motif DE_12h DE_12h-MAFA_MA1521.2 13 bp overlap
MAFF 1 dataset
Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap
MEF2A 1 dataset
Motif DE_12h DE_12h-MEF2A_MA0052.5 10 bp overlap
MSC 1 dataset
Motif ES_0h ES_0h-MSC_MA0665.1 10 bp overlap
MXD4 1 dataset
ChIP WTC11 ENCFF044PLT 265 bp overlap
MYB 1 dataset
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
NANOG 7 datasets
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 786 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 215 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 123 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 748 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 566 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 415 bp overlap
NCAPH2 1 dataset
ChIP RMG-I_ARID1A-KO GSE120058.NCAPH2.RMG-I_ARID1A-KO 318 bp overlap
NFIA 1 dataset
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
NFIX 1 dataset
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
NIPBL 1 dataset
ChIP GP5D GSE51234.NIPBL.GP5D 246 bp overlap
NR2F1 1 dataset
Motif DE_12h DE_12h-NR2F1_MA1537.2 13 bp overlap
NRL 1 dataset
Motif DE_12h DE_12h-NRL_MA0842.3 12 bp overlap
Olig2 1 dataset
Motif ES_0h ES_0h-Olig2_MA1997.2 6 bp overlap
POU1F1 1 dataset
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
POU4F1 1 dataset
Motif DE_12h DE_12h-POU4F1_MA0790.2 12 bp overlap
POU4F2 1 dataset
Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap
POU4F3 1 dataset
Motif DE_12h DE_12h-POU4F3_MA0791.2 12 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 743 bp overlap
PRDM1 1 dataset
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
Plagl1 1 dataset
Motif ES_0h ES_0h-Plagl1_MA1615.2 8 bp overlap
Ptf1A 1 dataset
Motif ES_0h ES_0h-Ptf1A_MA1619.2 8 bp overlap
RELA 2 datasets
ChIP Detroit-562_Poly-I GSE91018.RELA.Detroit-562_Poly-I 80 bp overlap
ChIP Detroit-562_TNFa GSE91018.RELA.Detroit-562_TNFa 102 bp overlap
RUNX3 1 dataset
Motif DE_12h DE_12h-RUNX3_MA0684.3 8 bp overlap
SMAD3 2 datasets
Motif DE_12h DE_12h-SMAD3_MA0795.1 10 bp overlap
ChIP HCC1954 GSE104760.SMAD3.HCC1954 135 bp overlap
SMAD5 1 dataset
Motif DE_12h DE_12h-SMAD5_MA1557.1 10 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 249 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 275 bp overlap
SMARCB1 1 dataset
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 164 bp overlap
SMARCC1 2 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 539 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 192 bp overlap
SOX15 1 dataset
Motif ES_0h ES_0h-SOX15_MA1152.2 7 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 235 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 196 bp overlap
SOX9 1 dataset
ChIP HT29 GSE63629.SOX9.HT29 84 bp overlap
SPIB 1 dataset
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
STAT3 2 datasets
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 119 bp overlap
ChIP MDA-MB-468_EtOH GSE85579.STAT3.MDA-MB-468_EtOH 109 bp overlap
Six4 1 dataset
Motif DE_12h DE_12h-Six4_MA2001.2 7 bp overlap
Smad4 1 dataset
Motif DE_12h DE_12h-Smad4_MA1153.2 7 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
TBP 1 dataset
ChIP hiPSC_WTb_RNase-neg GSE128135.TBP.hiPSC_WTb_RNase-neg 128 bp overlap
TEAD4 1 dataset
Motif ES_0h ES_0h-TEAD4_MA0809.3 8 bp overlap
TFAP4 1 dataset
Motif ES_0h ES_0h-TFAP4_MA0691.1 10 bp overlap
TFCP2 1 dataset
Motif DE_12h DE_12h-TFCP2_MA1968.2 9 bp overlap
THRB 1 dataset
Motif DE_12h DE_12h-THRB_MA1574.2 13 bp overlap
TRPS1 1 dataset
ChIP T-47D GSE107013.TRPS1.T-47D 58 bp overlap
Tcf12 1 dataset
Motif ES_0h ES_0h-Tcf12_MA0521.3 6 bp overlap
Tcf21 1 dataset
Motif ES_0h ES_0h-Tcf21_MA0832.2 10 bp overlap
Thap11 1 dataset
Motif DE_12h DE_12h-Thap11_MA1573.2 14 bp overlap
Twist2 1 dataset
Motif ES_0h ES_0h-Twist2_MA0633.3 6 bp overlap
ZBTB11 1 dataset
Motif DE_12h DE_12h-ZBTB11_MA2329.1 9 bp overlap
ZBTB7A 1 dataset
Motif DE_12h DE_12h-ZBTB7A_MA0750.3 9 bp overlap
ZBTB7C 1 dataset
Motif DE_12h DE_12h-ZBTB7C_MA0695.2 8 bp overlap
ZNF114 1 dataset
ChIP GM23338 ENCFF631OSW 357 bp overlap
ZNF157 1 dataset
Motif ES_0h ES_0h-ZNF157_MA2331.1 21 bp overlap
ZNF16 1 dataset
Motif DE_12h DE_12h-ZNF16_MA1654.2 21 bp overlap
ZNF175 1 dataset
Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap
ZNF184 2 datasets
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
ZNF264 1 dataset
ChIP HEK293 GSE76494.ZNF264.HEK293 59 bp overlap
ZNF317 1 dataset
Motif ES_0h ES_0h-ZNF317_MA1593.2 8 bp overlap
ZNF341 1 dataset
Motif ES_0h ES_0h-ZNF341_MA1655.2 8 bp overlap
ZNF449 1 dataset
Motif DE_12h DE_12h-ZNF449_MA1656.2 10 bp overlap
ZNF528 1 dataset
Motif ES_0h ES_0h-ZNF528_MA1597.1 17 bp overlap
ZNF558 1 dataset
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
ZNF667 1 dataset
Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap
ZNF707 1 dataset
Motif DE_12h DE_12h-ZNF707_MA1715.1 15 bp overlap
ZNF768 1 dataset
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap