chr1 : 8,118,269 8,118,560
291 bp 106 TFs 0 linked genes
This 291 bp open chromatin element has no linked target genes and is bound by 106 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:8,113,269 – 8,123,560
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
106 transcription factors
Source
Cell type
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 291 bp overlap
ARID1A 2 datasets
ChIP RMG-I GSE104545.ARID1A.RMG-I 179 bp overlap
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 53 bp overlap
ARID2 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 276 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-T910M 123 bp overlap
ATXN7L3 1 dataset
ChIP HCT-116_thaps GSE121798.ATXN7L3.HCT-116_thaps 291 bp overlap
BRD2 5 datasets
ChIP MDA-MB-231_DMSO GSE116879.BRD2.MDA-MB-231_DMSO 291 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD2.MDA-MB-231_DMSO_rDNA 291 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD2.MDA-MB-231_MGSK2801 176 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD2.MDA-MB-231_MGSK2801_rDNA 176 bp overlap
ChIP NCI-H23 GSE104481.BRD2.NCI-H23 201 bp overlap
BRD4 13 datasets
ChIP COLO-205 GSE73319.BRD4.COLO-205 223 bp overlap
ChIP HCT-116 GSE57628.BRD4.HCT-116 291 bp overlap
ChIP HCT-116 GSE73319.BRD4.HCT-116 291 bp overlap
ChIP HT29 GSE73319.BRD4.HT29 291 bp overlap
ChIP MDA-MB-231_JQ1-neg_L GSE136151.BRD4.MDA-MB-231_JQ1-neg_L 291 bp overlap
ChIP MDA-MB-231_JQ1-neg_S_3f GSE136151.BRD4.MDA-MB-231_JQ1-neg_S_3f 291 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801 156 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801_rDNA 156 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 255 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 255 bp overlap
ChIP SUM159PT_DMSO_24h GSE87418.BRD4.SUM159PT_DMSO_24h 161 bp overlap
ChIP SUM159PT_Dox_48h GSE87418.BRD4.SUM159PT_Dox_48h 291 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 291 bp overlap
BRD9 3 datasets
ChIP G-401 GSE120234.BRD9.G-401 237 bp overlap
ChIP MDA-MB-231_DMSO GSE116879.BRD9.MDA-MB-231_DMSO 149 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD9.MDA-MB-231_MGSK2801 65 bp overlap
CDK8 1 dataset
ChIP HCT-116_NOMO GSE38258.CDK8.HCT-116_NOMO 291 bp overlap
CDK9 3 datasets
ChIP A-375_DMSO GSE57431.CDK9.A-375_DMSO 228 bp overlap
ChIP A-375_DMSO GSE68052.CDK9.A-375_DMSO 157 bp overlap
ChIP HCT-116_KAP1-KO GSE132705.CDK9.HCT-116_KAP1-KO 291 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 291 bp overlap
CHD2 1 dataset
ChIP HeLa-S3 ENCSR000ECP.CHD2.HeLa-S3 85 bp overlap
CHD4 1 dataset
ChIP A-549 ENCSR550SCU.CHD4.A-549 63 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 261 bp overlap
CTCF_s 1 dataset
ChIP HeLa-S3_biotin GSE108869.CTCF_s.HeLa-S3_biotin 126 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF335XTP 70 bp overlap
ChIP BLaER1 ENCFF896HSY 286 bp overlap
DPF2 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.DPF2.BIN-67_lentivirus-SMARCA4 147 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-K785R 212 bp overlap
E2F6 1 dataset
ChIP A-549 ENCSR000BTC.E2F6.A-549 116 bp overlap
ELL2 1 dataset
ChIP HeLa_DOX_EGF GSE40632.ELL2.HeLa_DOX_EGF 112 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 187 bp overlap
EP300 3 datasets
ChIP A-549 ENCSR000BPW.EP300.A-549 194 bp overlap
ChIP HeLa-S3 ENCSR680OFU.EP300.HeLa-S3 71 bp overlap
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 239 bp overlap
ESR1 2 datasets
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 224 bp overlap
ChIP Ishikawa_E2_D538G GSE132426.ESR1.Ishikawa_E2_D538G 202 bp overlap
EZH2 1 dataset
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 221 bp overlap
FOSL1 2 datasets
ChIP BT-549 GSE112961.FOSL1.BT-549 205 bp overlap
ChIP HCT-116 ENCSR000BTE.FOSL1.HCT-116 136 bp overlap
FOSL2 1 dataset
ChIP A-549 ENCSR448TVS.FOSL2.A-549 291 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 291 bp overlap
ChIP DE DE-FOXA2-2 291 bp overlap
FOXC1 1 dataset
ChIP HepG2 ENCFF882ISP 243 bp overlap
FOXM1 1 dataset
ChIP Ishikawa ENCSR000BUS.FOXM1.Ishikawa 189 bp overlap
GATA3 1 dataset
ChIP A549 ENCFF226FVV 223 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 291 bp overlap
ChIP DE DE-GATA4-2 291 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 291 bp overlap
ChIP DE DE-GATA6-2 291 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 291 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 291 bp overlap
GRHL2 1 dataset
ChIP OVCAR-3 GSE71018.GRHL2.OVCAR-3 232 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 162 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 187 bp overlap
HOXB13 2 datasets
ChIP A-549 ENCSR967ZMR.HOXB13.A-549 291 bp overlap
ChIP G-401 GSE65381.HOXB13.G-401 281 bp overlap
HOXB5 1 dataset
ChIP A-549 ENCSR748HJZ.HOXB5.A-549 213 bp overlap
INO80 2 datasets
ChIP Hep-G2 GSE97411.INO80.Hep-G2 261 bp overlap
ChIP Huh-7 GSE97411.INO80.Huh-7 291 bp overlap
JUN 5 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 291 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 291 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 110 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 101 bp overlap
ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 253 bp overlap
JUND 1 dataset
ChIP HeLa-S3 ENCSR000EDH.JUND.HeLa-S3 182 bp overlap
KDM1A 1 dataset
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 212 bp overlap
KDM5B 1 dataset
ChIP HepG2 ENCFF706LUI 282 bp overlap
KLF5 2 datasets
ChIP HEK293 GSE88976.KLF5.HEK293 207 bp overlap
ChIP KATO-III GSE51705.KLF5.KATO-III 165 bp overlap
KMT2A 2 datasets
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 60 bp overlap
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 210 bp overlap
KMT2D 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 143 bp overlap
MAX 5 datasets
ChIP A-549 ENCSR000BTJ.MAX.A-549 215 bp overlap
ChIP A549 ENCFF310XGQ 109 bp overlap
ChIP HCT-116 ENCSR000BSH.MAX.HCT-116 253 bp overlap
ChIP HeLa-S3 ENCSR000ECN.MAX.HeLa-S3 169 bp overlap
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 291 bp overlap
MED1 4 datasets
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 285 bp overlap
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 291 bp overlap
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 285 bp overlap
ChIP hMSC-TERT4_osteoblast-D7 GSE113253.MED1.hMSC-TERT4_osteoblast-D7 175 bp overlap
MED26 2 datasets
ChIP HCT-116 GSE121355.MED26.HCT-116 291 bp overlap
ChIP HCT-116_aux GSE121355.MED26.HCT-116_aux 291 bp overlap
MYC 2 datasets
ChIP DLD-1_MYC-activated GSE117240.MYC.DLD-1_MYC-activated 177 bp overlap
ChIP U2OS_SHRCTR GSE77356.MYC.U2OS_SHRCTR 204 bp overlap
MYOD1 2 datasets
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 210 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 178 bp overlap
NELFCD 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.NELFCD.DLD-1_NELFCD-AID 291 bp overlap
NELFE 2 datasets
ChIP DLD-1_NELFCD-AID GSE144786.NELFE.DLD-1_NELFCD-AID 291 bp overlap
ChIP DLD-1_NELFCD-AID_treated GSE144786.NELFE.DLD-1_NELFCD-AID_treated 196 bp overlap
NFKBIZ 3 datasets
ChIP Hep-G2 ENCSR235OVI.NFKBIZ.Hep-G2 62 bp overlap
ChIP HepG2 ENCFF216AUS 188 bp overlap
ChIP HepG2 ENCFF216AUS 291 bp overlap
NIPBL 2 datasets
ChIP HCT-116_RAD21-mAC GSE104888.NIPBL.HCT-116_RAD21-mAC 291 bp overlap
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.NIPBL.HCT-116_RAD21-mAC_500uM_auxin 291 bp overlap
NR3C1 3 datasets
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 248 bp overlap
ChIP Ishikawa_Dex GSE109891.NR3C1.Ishikawa_Dex 112 bp overlap
ChIP Ishikawa_Dex_E2 GSE109891.NR3C1.Ishikawa_Dex_E2 143 bp overlap
NR5A2 1 dataset
ChIP A-549 ENCSR190GIW.NR5A2.A-549 287 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 291 bp overlap
PBX1 1 dataset
ChIP A-549 ENCSR637RKG.PBX1.A-549 155 bp overlap
PBX3 2 datasets
ChIP A-549 ENCSR000BTN.PBX3.A-549 145 bp overlap
ChIP A549 ENCFF277EQG 198 bp overlap
PHIP 2 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 291 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 241 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 291 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 253 bp overlap
POLR2A 1 dataset
ChIP HCT116 ENCFF508RDJ 258 bp overlap
RAD21 6 datasets
ChIP HCT-116 GSE131606.RAD21.HCT-116 291 bp overlap
ChIP HCT-116 GSE121355.RAD21.HCT-116 291 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.RAD21.HCT-116_RAD21-mAC 224 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 291 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 233 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 108 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 177 bp overlap
REST 2 datasets
ChIP HeLa-S3 ENCFF911DTC 136 bp overlap
ChIP HeLa-S3 ENCSR000BMN.REST.HeLa-S3 128 bp overlap
SIX1 1 dataset
ChIP Hep-G2 ENCSR561BQM.SIX1.Hep-G2 221 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 147 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 291 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 287 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 291 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 291 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 291 bp overlap
SMAD3 4 datasets
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 143 bp overlap
ChIP HCC1954 GSE104760.SMAD3.HCC1954 204 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 209 bp overlap
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 127 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 228 bp overlap
SMARCA4 5 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 200 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 291 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 280 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 100 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 244 bp overlap
SMARCC1 7 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 85 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 226 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 178 bp overlap
ChIP G-401_Dox GSE71504.SMARCC1.G-401_Dox 149 bp overlap
ChIP HeLa-S3 ENCSR000EDM.SMARCC1.HeLa-S3 291 bp overlap
ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 180 bp overlap
ChIP TTC-549_NoDox GSE71504.SMARCC1.TTC-549_NoDox 270 bp overlap
SMC1 2 datasets
ChIP DKO GSE131606.SMC1.DKO 291 bp overlap
ChIP HCT-116 GSE131606.SMC1.HCT-116 291 bp overlap
SMC3 3 datasets
ChIP HeLa GSE126990.SMC3.HeLa 97 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 97 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 97 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 291 bp overlap
SP1 2 datasets
ChIP A-549 ENCSR000BPE.SP1.A-549 100 bp overlap
ChIP HCT-116 ENCSR000BSF.SP1.HCT-116 255 bp overlap
SRSF3 1 dataset
ChIP K-562 ENCSR268QIQ.SRSF3.K-562 192 bp overlap
SS18 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 172 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SS18.BIN-67_lentivirus-SMARCA4-K785R 225 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 144 bp overlap
STAT3 1 dataset
ChIP MDA-MB-231_EtOH GSE85579.STAT3.MDA-MB-231_EtOH 56 bp overlap
SUPT5H 4 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 291 bp overlap
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 291 bp overlap
ChIP DLD-1_NELFE-AID GSE144786.SUPT5H.DLD-1_NELFE-AID 61 bp overlap
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 291 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 267 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TCF12 1 dataset
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 285 bp overlap
TCF7L2 3 datasets
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 291 bp overlap
ChIP LNCaP GSE51621.TCF7L2.LNCaP 179 bp overlap
ChIP LNCaP GSE51621.TCF7L2.LNCaP 75 bp overlap
TEAD1 3 datasets
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 225 bp overlap
ChIP MSTO GSE68170.TEAD1.MSTO 227 bp overlap
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 92 bp overlap
TEAD4 8 datasets
ChIP A-549 ENCSR000BUD.TEAD4.A-549 153 bp overlap
ChIP HCT-116 ENCSR000BVJ.TEAD4.HCT-116 116 bp overlap
ChIP HCT-116_F4 GSE152144.TEAD4.HCT-116_F4 85 bp overlap
ChIP HCT-116_G7 GSE152144.TEAD4.HCT-116_G7 57 bp overlap
ChIP Ishikawa ENCFF772OTG 105 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 291 bp overlap
ChIP MDA-MB-231 GSE66081.TEAD4.MDA-MB-231 222 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 249 bp overlap
TFAP4 1 dataset
ChIP DLD-1 GSE46935.TFAP4.DLD-1 251 bp overlap
UBN1 1 dataset
ChIP HeLa GSE45024.UBN1.HeLa 79 bp overlap
YAP1 1 dataset
ChIP MDA-MB-231 GSE66081.YAP1.MDA-MB-231 224 bp overlap
YY1 4 datasets
ChIP HCT-116 ENCSR000BNX.YY1.HCT-116 106 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 83 bp overlap
ChIP Huh-7 GSE97411.YY1.Huh-7 291 bp overlap
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 282 bp overlap
ZBTB7A 1 dataset
ChIP Ishikawa ENCSR000BSZ.ZBTB7A.Ishikawa 174 bp overlap
ZC3H8 1 dataset
ChIP HCT-116 GSE47938.ZC3H8.HCT-116 164 bp overlap
ZFX 4 datasets
ChIP HCT-116 GSE102616.ZFX.HCT-116 291 bp overlap
ChIP HCT-116 ENCSR503GVO.ZFX.HCT-116 291 bp overlap
ChIP HCT116 ENCFF324IZY 291 bp overlap
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 106 bp overlap
ZHX1 1 dataset
ChIP HeLa-S3 ENCSR855WKQ.ZHX1.HeLa-S3 238 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 129 bp overlap
ZNF143 1 dataset
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 147 bp overlap
ZNF501 2 datasets
ChIP Hep-G2 ENCSR227PHM.ZNF501.Hep-G2 291 bp overlap
ChIP HepG2 ENCFF879XZR 169 bp overlap
ZNF687 2 datasets
ChIP HepG2 ENCFF653WIX 177 bp overlap
ChIP HepG2 ENCFF653WIX 291 bp overlap