chr3 : 171,462,345 – 171,462,526
181 bp 92 TFs 3 linked genes
This 181 bp open chromatin element is linked to ENSG00000279673, TNIK, and ENSG00000240497 and is bound by 92 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000279673 1.8 kb Proximal Proximity
TNIK 1.9 kb Proximal Proximity
ENSG00000240497 2.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:171,457,345 – 171,467,526
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
92 transcription factors
Source
Cell type
AFF1 1 dataset
ChIP K-562 ENCSR241LIH.AFF1.K-562 90 bp overlap
ARID1B 1 dataset
ChIP K-562 ENCSR822CCM.ARID1B.K-562 57 bp overlap
ARID3A 1 dataset
ChIP K-562 ENCSR000EFY.ARID3A.K-562 135 bp overlap
ATF3 1 dataset
ChIP K562 ENCFF921JQW 162 bp overlap
ATF4 1 dataset
ChIP K-562 ENCSR145TSJ.ATF4.K-562 111 bp overlap
BRD4 1 dataset
ChIP K562 ENCFF092PWQ 181 bp overlap
Bach1::Mafk 1 dataset
Motif DE_12h DE_12h-Bach1Mafk_MA0591.2 12 bp overlap
CDX1 1 dataset
Motif DE_12h DE_12h-CDX1_MA0878.3 10 bp overlap
CDX4 1 dataset
Motif DE_12h DE_12h-CDX4_MA1473.2 9 bp overlap
CEBPB 1 dataset
ChIP K-562 ENCSR000EHE.CEBPB.K-562 115 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 78 bp overlap
CREB3L1 1 dataset
ChIP K-562 ENCSR109YGM.CREB3L1.K-562 55 bp overlap
CTCF 1 dataset
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
E4F1 1 dataset
ChIP K-562 ENCSR731LHZ.E4F1.K-562 181 bp overlap
EHF 1 dataset
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
ELF1 1 dataset
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
ELF3 1 dataset
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
ELK1 4 datasets
ChIP GM12878 ENCFF807NFQ 181 bp overlap
ChIP K-562 ENCSR000EFU.ELK1.K-562 181 bp overlap
ChIP K562 ENCFF913QBM 181 bp overlap
ChIP WA01 ERP002417.ELK1.WA01 166 bp overlap
ELK4 2 datasets
ChIP HEK293 ENCFF309WLN 181 bp overlap
ChIP HEK293 ENCSR000EVB.ELK4.HEK293 181 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 82 bp overlap
ETS1 1 dataset
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 181 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
Erg 1 dataset
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
FLI1 1 dataset
ChIP CTV-1_DSG GSE128835.FLI1.CTV-1_DSG 167 bp overlap
GABPA 1 dataset
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 181 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR387UWP.HDAC1.K-562 160 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR075HTM.HDAC2.K-562 181 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 154 bp overlap
HOXA10 1 dataset
Motif DE_12h DE_12h-HOXA10_MA0899.2 9 bp overlap
HOXB13 1 dataset
Motif DE_12h DE_12h-HOXB13_MA0901.3 9 bp overlap
HOXD9 1 dataset
Motif DE_12h DE_12h-HOXD9_MA0913.3 9 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 156 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 181 bp overlap
JUN 1 dataset
ChIP DE_D1 S08-DE-d1-JUN-exp1 181 bp overlap
L3MBTL2 2 datasets
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 158 bp overlap
ChIP K562 ENCFF320EQC 181 bp overlap
Lef1 1 dataset
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
MAF 1 dataset
Motif DE_12h DE_12h-MAF_MA1520.2 13 bp overlap
MAF::NFE2 1 dataset
Motif DE_12h DE_12h-MAFNFE2_MA0501.2 11 bp overlap
MAFA 1 dataset
Motif DE_12h DE_12h-MAFA_MA1521.2 13 bp overlap
MAFG::NFE2L1 1 dataset
Motif DE_12h DE_12h-MAFGNFE2L1_MA0089.3 11 bp overlap
MAX 1 dataset
ChIP K-562 ENCSR000EFV.MAX.K-562 111 bp overlap
MED1 1 dataset
ChIP GM12878 GSE93080.MED1.GM12878 66 bp overlap
MEIS2 1 dataset
ChIP K-562 ENCSR851BNE.MEIS2.K-562 181 bp overlap
MGA 1 dataset
ChIP K562 ENCFF140CEX 176 bp overlap
MNT 2 datasets
ChIP K562 ENCFF820IGH 181 bp overlap
ChIP K562 ENCFF820IGH 181 bp overlap
MTA3 2 datasets
ChIP K-562 ENCSR914NEI.MTA3.K-562 149 bp overlap
ChIP K562 ENCFF289UFB 181 bp overlap
MYB 5 datasets
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
ChIP DU528 GSE94000.MYB.DU528 181 bp overlap
ChIP Jurkat GSE59657.MYB.Jurkat 181 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 160 bp overlap
ChIP PF-382 GSE94000.MYB.PF-382 175 bp overlap
Mafg 1 dataset
Motif DE_12h DE_12h-Mafg_MA0659.4 12 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 181 bp overlap
NCOR1 1 dataset
ChIP K-562 ENCSR798ILC.NCOR1.K-562 181 bp overlap
NR2F1 1 dataset
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 181 bp overlap
Nfe2l2 1 dataset
Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap
OTX1 1 dataset
ChIP K562 ENCFF829SLD 111 bp overlap
PBX3 1 dataset
ChIP GM12878 ENCSR000BGR.PBX3.GM12878 133 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 159 bp overlap
PKNOX1 6 datasets
ChIP GM12878 ENCFF589FCY 181 bp overlap
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 181 bp overlap
ChIP HEK293T ENCFF174WDB 181 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 165 bp overlap
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 181 bp overlap
ChIP K562 ENCFF236IUS 181 bp overlap
POLR2A 3 datasets
ChIP GM12878 ENCFF263VRI 181 bp overlap
ChIP GM19099 ENCFF726IBN 181 bp overlap
ChIP K562 ENCFF215CWW 180 bp overlap
POLR2H 2 datasets
ChIP K562 ENCFF377NHG 181 bp overlap
ChIP K562 ENCFF377NHG 181 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 181 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 54 bp overlap
REL 1 dataset
Motif DE_12h DE_12h-REL_MA0101.1 10 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 144 bp overlap
SMARCA4 7 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 181 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 181 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 181 bp overlap
ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 181 bp overlap
ChIP CTV-1_delA GSE128835.SMARCA4.CTV-1_delA 181 bp overlap
ChIP CTV-1_delQ GSE128835.SMARCA4.CTV-1_delQ 181 bp overlap
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 86 bp overlap
SMARCE1 1 dataset
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 181 bp overlap
SOX6 1 dataset
ChIP K-562 ENCSR788RSW.SOX6.K-562 133 bp overlap
SPI1 4 datasets
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 145 bp overlap
ChIP CTV-1_delA GSE128835.SPI1.CTV-1_delA 180 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 181 bp overlap
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 109 bp overlap
SRF 19 datasets
Motif DE_12h DE_12h-SRF_MA0083.3 16 bp overlap
ChIP GM12878 ENCFF565AWY 166 bp overlap
ChIP GM12878 ENCFF878IIX 181 bp overlap
ChIP GM12878 ENCFF880MVC 114 bp overlap
ChIP GM12878 ENCSR041XML.SRF.GM12878 181 bp overlap
ChIP GM12878 ENCSR000BGE.SRF.GM12878 181 bp overlap
ChIP GM12878 ENCSR000BMI.SRF.GM12878 181 bp overlap
ChIP H1 ENCFF036PEF 181 bp overlap
ChIP HCT-116 ENCSR000BSC.SRF.HCT-116 181 bp overlap
ChIP HCT116 ENCFF497JOF 157 bp overlap
ChIP Hep-G2 ENCSR000BLV.SRF.Hep-G2 128 bp overlap
ChIP Ishikawa ENCFF992QXM 82 bp overlap
ChIP Ishikawa ENCSR000BTD.SRF.Ishikawa 181 bp overlap
ChIP K-562 ENCSR582IAO.SRF.K-562 181 bp overlap
ChIP K-562 ENCSR000BLK.SRF.K-562 181 bp overlap
ChIP K562 ENCFF664RPC 97 bp overlap
ChIP K562 ENCFF766EOO 181 bp overlap
ChIP K562 ENCFF972RAQ 181 bp overlap
ChIP WA01 ENCSR000BIV.SRF.WA01 181 bp overlap
TAF1 2 datasets
ChIP GM12878 ENCSR000BGS.TAF1.GM12878 69 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 50 bp overlap
TAL1 1 dataset
ChIP K-562 ENCSR000EHB.TAL1.K-562 152 bp overlap
TBP 1 dataset
ChIP hESC GSE122298.TBP.hESC 61 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 181 bp overlap
TCF7 1 dataset
Motif DE_12h DE_12h-TCF7_MA0769.3 7 bp overlap
TCF7L2 5 datasets
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 181 bp overlap
ChIP HCT-116_WT GSE127960.TCF7L2.HCT-116_WT 158 bp overlap
ChIP HCT116 ENCFF038POZ 181 bp overlap
ChIP HEK293 ENCFF513JQN 181 bp overlap
ChIP LNCaP GSE51621.TCF7L2.LNCaP 161 bp overlap
TFDP1 1 dataset
ChIP K562 ENCFF794ZXJ 181 bp overlap
TOE1 1 dataset
ChIP K562 ENCFF728FRA 111 bp overlap
UBTF 1 dataset
ChIP K562 ENCFF174SPM 181 bp overlap
YY1 1 dataset
ChIP K-562 ENCSR000BMH.YY1.K-562 97 bp overlap
ZBTB7A 2 datasets
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 123 bp overlap
ChIP K-562 GSE103445.ZBTB7A.K-562 168 bp overlap
ZFP36 4 datasets
ChIP GM12878 ENCFF234WRG 181 bp overlap
ChIP GM12878 ENCSR900XDB.ZFP36.GM12878 178 bp overlap
ChIP K-562 ENCSR776CYN.ZFP36.K-562 156 bp overlap
ChIP K562 ENCFF255RZG 181 bp overlap
ZNF189 1 dataset
ChIP HEK293T GSE78099.ZNF189.HEK293T 157 bp overlap
ZNF197 1 dataset
ChIP K562 ENCFF872BAU 181 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF341 2 datasets
ChIP HEK293 ENCFF944VMC 181 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 181 bp overlap
ZNF410 1 dataset
Motif DE_12h DE_12h-ZNF410_MA0752.2 16 bp overlap
ZNF558 1 dataset
ChIP HEK293 ENCSR447ZTA.ZNF558.HEK293 163 bp overlap
ZNF582 1 dataset
Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap
ZNF592 1 dataset
ChIP K-562 ENCSR249BHQ.ZNF592.K-562 99 bp overlap
ZNF85 1 dataset
Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 181 bp overlap
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