chr1 : 66,333,512 66,333,794
282 bp 73 TFs 1 linked gene
This 282 bp open chromatin element is linked to PDE4B and is bound by 73 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
PDE4B 1.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:66,328,512 – 66,338,794
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
73 transcription factors
Source
Cell type
AFF4 2 datasets
ChIP CD4_Th1_DMSO GSE62482.AFF4.CD4_Th1_DMSO 282 bp overlap
ChIP HCT-116_STARVED GSE30267.AFF4.HCT-116_STARVED 137 bp overlap
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 259 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 268 bp overlap
ATXN7L3 1 dataset
ChIP HCT-116_thaps GSE121798.ATXN7L3.HCT-116_thaps 242 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 206 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 191 bp overlap
BRCA1 1 dataset
ChIP K-562 ENCSR223MLH.BRCA1.K-562 130 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 238 bp overlap
BRD2 2 datasets
ChIP SUM149PT_JQ1 GSE131097.BRD2.SUM149PT_JQ1 282 bp overlap
ChIP SUM149PT_R_DMSO GSE131097.BRD2.SUM149PT_R_DMSO 282 bp overlap
BRD3 2 datasets
ChIP A-549 GSE119863.BRD3.A-549 218 bp overlap
ChIP MM1-S GSE43743.BRD3.MM1-S 143 bp overlap
BRD4 18 datasets
ChIP CD4_Th1_DMSO GSE62482.BRD4.CD4_Th1_DMSO 282 bp overlap
ChIP CLL_patient1_4h_CpG_BET GSE109411.BRD4.CLL_patient1_4h_CpG_BET 282 bp overlap
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 198 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 238 bp overlap
ChIP GM15850_PA1_JQ1 GSE99402.BRD4.GM15850_PA1_JQ1 171 bp overlap
ChIP HCC1395 GSE63581.BRD4.HCC1395 282 bp overlap
ChIP HCT-116 GSE57628.BRD4.HCT-116 241 bp overlap
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 231 bp overlap
ChIP HEK293_sgMYOD GSE129407.BRD4.HEK293_sgMYOD 201 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 211 bp overlap
ChIP HFOB_DIFF GSE82295.BRD4.HFOB_DIFF 282 bp overlap
ChIP HUVEC-C_modETS1 GSE93030.BRD4.HUVEC-C_modETS1 231 bp overlap
ChIP HUVEC-C_modGFP GSE93030.BRD4.HUVEC-C_modGFP 282 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 282 bp overlap
ChIP MM1-S GSE45984.BRD4.MM1-S 282 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 195 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 282 bp overlap
ChIP T-cell_DMSO GSE138084.BRD4.T-cell_DMSO 246 bp overlap
CDK7 1 dataset
ChIP SK-MEL-147 GSE45984.CDK7.SK-MEL-147 146 bp overlap
CDK8 2 datasets
ChIP HCT-116_NOMO GSE38258.CDK8.HCT-116_NOMO 282 bp overlap
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 62 bp overlap
CDK9 2 datasets
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 185 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.CDK9.MM1-S_JQ1_50NM 174 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 192 bp overlap
CHD1 1 dataset
ChIP A-549 ENCSR398YBM.CHD1.A-549 130 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 185 bp overlap
CTCF 2 datasets
ChIP neutrophil ENCFF770HHA 239 bp overlap
ChIP neutrophil ENCSR785YRL.CTCF.neutrophil 241 bp overlap
EP300 1 dataset
ChIP tibial nerve ENCFF346AYA 262 bp overlap
ERG 2 datasets
ChIP HUVEC-C GSE128382.ERG.HUVEC-C 158 bp overlap
ChIP HUVEC-C GSE124891.ERG.HUVEC-C 110 bp overlap
ETS1 6 datasets
ChIP HUVEC-C_12h GSE93030.ETS1.HUVEC-C_12h 174 bp overlap
ChIP HUVEC-C_4h GSE93030.ETS1.HUVEC-C_4h 200 bp overlap
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 214 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.ETS1.HUVEC-C_VEGF_12h 174 bp overlap
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 232 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.ETS1.HUVEC-C_VEGF_4h 200 bp overlap
EZH2 3 datasets
ChIP DND41 ENCSR000ASW.EZH2.DND41 196 bp overlap
ChIP peripheral-blood-mononuclear-cell GSE115772.EZH2.peripheral-blood-mononuclear-cell 168 bp overlap
ChIP peripheral-blood-mononuclear-cell_mut GSE115772.EZH2.peripheral-blood-mononuclear-cell_mut 282 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 159 bp overlap
FOXA1 4 datasets
ChIP LNCaP_S2101-4H GSE114266.FOXA1.LNCaP_S2101-4H 210 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 278 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 160 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 282 bp overlap
FOXP1 1 dataset
ChIP B-cell_IgD-pos GSE114803.FOXP1.B-cell_IgD-pos 125 bp overlap
HDGF 1 dataset
ChIP GM12878 ENCFF653WYI 282 bp overlap
IKZF1 3 datasets
ChIP BCR-ABL1_LAX2 GSE58825.IKZF1.BCR-ABL1_LAX2 198 bp overlap
ChIP GM12878 ENCFF753XDO 282 bp overlap
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 216 bp overlap
IKZF2 3 datasets
ChIP GM12878 ENCFF238LYK 282 bp overlap
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 228 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 219 bp overlap
INTS11 1 dataset
ChIP HL-60 GSE106359.INTS11.HL-60 151 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 267 bp overlap
JMJD1C 1 dataset
ChIP HL-60 GSE63484.JMJD1C.HL-60 282 bp overlap
JUN 1 dataset
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 130 bp overlap
JUND 1 dataset
ChIP HCT116 ENCFF748ZQX 177 bp overlap
KMT2A 1 dataset
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 282 bp overlap
MAF 1 dataset
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 238 bp overlap
MAX 2 datasets
ChIP P493-6 GSE36354.MAX.P493-6 246 bp overlap
ChIP P493-6_CMYC_1H GSE36354.MAX.P493-6_CMYC_1H 265 bp overlap
MED1 4 datasets
ChIP HCT-116 GSE121798.MED1.HCT-116 239 bp overlap
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 204 bp overlap
ChIP MM1-S_JQ1 GSE42161.MED1.MM1-S_JQ1 196 bp overlap
ChIP U-87MG GSE36354.MED1.U-87MG 194 bp overlap
MED26 1 dataset
ChIP HCT-116_aux GSE121355.MED26.HCT-116_aux 282 bp overlap
MEN1 1 dataset
ChIP OCI-AML-3_DMSO GSE129636.MEN1.OCI-AML-3_DMSO 232 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCFF995GXC 282 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 282 bp overlap
NEUROD1 3 datasets
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 212 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 209 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 221 bp overlap
NIPBL 2 datasets
ChIP HCT-116_RAD21-mAC GSE104888.NIPBL.HCT-116_RAD21-mAC 263 bp overlap
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.NIPBL.HCT-116_RAD21-mAC_500uM_auxin 263 bp overlap
NR3C1 1 dataset
ChIP ALL_DEX GSE109946.NR3C1.ALL_DEX 191 bp overlap
NRF1 2 datasets
ChIP HCC1954 GSE67867.NRF1.HCC1954 161 bp overlap
ChIP Namalwa GSE53133.NRF1.Namalwa 180 bp overlap
POLR2A 47 datasets
ChIP GM12878 ENCFF412KAE 282 bp overlap
ChIP GM12878 ENCFF521FXC 185 bp overlap
ChIP GM12878 ENCFF631ERR 282 bp overlap
ChIP GM12878 ENCFF631ERR 161 bp overlap
ChIP GM12891 ENCFF012SUT 282 bp overlap
ChIP GM12891 ENCFF127ICP 282 bp overlap
ChIP GM12891 ENCFF127ICP 118 bp overlap
ChIP GM12891 ENCFF379FCI 282 bp overlap
ChIP GM12891 ENCFF379FCI 223 bp overlap
ChIP GM12892 ENCFF245LYF 282 bp overlap
ChIP GM12892 ENCFF506PGQ 282 bp overlap
ChIP GM15510 ENCFF880HVJ 282 bp overlap
ChIP GM18951 ENCFF079KKO 121 bp overlap
ChIP GM19099 ENCFF726IBN 120 bp overlap
ChIP GM19193 ENCFF599VTO 244 bp overlap
ChIP GM23338 ENCFF450WCS 282 bp overlap
ChIP HCT116 ENCFF508RDJ 282 bp overlap
ChIP HL-60 ENCFF321XKE 282 bp overlap
ChIP NB4 ENCFF780KAX 282 bp overlap
ChIP NB4 ENCFF780KAX 77 bp overlap
ChIP Raji ENCFF613VGX 282 bp overlap
ChIP body of pancreas ENCFF675RCN 282 bp overlap
ChIP body of pancreas ENCFF675RCN 52 bp overlap
ChIP breast epithelium ENCFF045XXN 282 bp overlap
ChIP endothelial cell of umbilical vein ENCFF091YHT 282 bp overlap
ChIP endothelial cell of umbilical vein ENCFF131DWO 201 bp overlap
ChIP endothelial cell of umbilical vein ENCFF303XUJ 282 bp overlap
ChIP endothelial cell of umbilical vein ENCFF467WJF 282 bp overlap
ChIP esophagus muscularis mucosa ENCFF759BBR 171 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 282 bp overlap
ChIP esophagus squamous epithelium ENCFF708IOX 57 bp overlap
ChIP gastrocnemius medialis ENCFF145VIB 282 bp overlap
ChIP gastrocnemius medialis ENCFF145VIB 215 bp overlap
ChIP lower leg skin ENCFF058ULB 264 bp overlap
ChIP lower leg skin ENCFF687RJC 265 bp overlap
ChIP prostate gland ENCFF881OMH 257 bp overlap
ChIP right lobe of liver ENCFF026NCK 282 bp overlap
ChIP sigmoid colon ENCFF653CQA 258 bp overlap
ChIP sigmoid colon ENCFF725QFT 282 bp overlap
ChIP sigmoid colon ENCFF754JQR 276 bp overlap
ChIP spleen ENCFF044PYR 282 bp overlap
ChIP spleen ENCFF446ZGT 277 bp overlap
ChIP stomach ENCFF607ZPU 168 bp overlap
ChIP thyroid gland ENCFF979LRR 250 bp overlap
ChIP upper lobe of left lung ENCFF095BJW 282 bp overlap
ChIP upper lobe of left lung ENCFF199JUI 282 bp overlap
ChIP upper lobe of left lung ENCFF640VPA 249 bp overlap
POU2F2 1 dataset
ChIP GM12878 ENCFF207RKY 252 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 156 bp overlap
RAD21 4 datasets
ChIP HUVEC-C_hypoxia GSE94872.RAD21.HUVEC-C_hypoxia 241 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-360m-Flavo-240m 98 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.RAD21.peripheral-blood-neutrophil_PMA-1 282 bp overlap
ChIP peripheral-blood-neutrophil_US-1 GSE126755.RAD21.peripheral-blood-neutrophil_US-1 282 bp overlap
RELA 26 datasets
ChIP BJAB_4h-activation GSE117250.RELA.BJAB_4h-activation 195 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 150 bp overlap
ChIP HUVEC-C_TNF-30min GSE121890.RELA.HUVEC-C_TNF-30min 120 bp overlap
ChIP HUVEC-C_TNF_30M GSE34500.RELA.HUVEC-C_TNF_30M 120 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 137 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 273 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 201 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 170 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 264 bp overlap
ChIP aortic-endothelial-cell_IL1B_D22 GSE139377.RELA.aortic-endothelial-cell_IL1B_D22 127 bp overlap
ChIP aortic-endothelial-cell_IL1B_D24 GSE139377.RELA.aortic-endothelial-cell_IL1B_D24 148 bp overlap
ChIP aortic-endothelial-cell_IL1B_D25 GSE139377.RELA.aortic-endothelial-cell_IL1B_D25 139 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 260 bp overlap
ChIP aortic-endothelial-cell_IL1B_D28 GSE139377.RELA.aortic-endothelial-cell_IL1B_D28 155 bp overlap
ChIP aortic-endothelial-cell_IL1B_D3 GSE139377.RELA.aortic-endothelial-cell_IL1B_D3 191 bp overlap
ChIP aortic-endothelial-cell_IL1B_D33 GSE139377.RELA.aortic-endothelial-cell_IL1B_D33 188 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 282 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 282 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 282 bp overlap
ChIP aortic-endothelial-cell_IL1B_D41 GSE139377.RELA.aortic-endothelial-cell_IL1B_D41 183 bp overlap
ChIP aortic-endothelial-cell_IL1B_D45 GSE139377.RELA.aortic-endothelial-cell_IL1B_D45 282 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 282 bp overlap
ChIP aortic-endothelial-cell_IL1B_D49 GSE139377.RELA.aortic-endothelial-cell_IL1B_D49 282 bp overlap
ChIP aortic-endothelial-cell_IL1B_D6 GSE139377.RELA.aortic-endothelial-cell_IL1B_D6 210 bp overlap
ChIP aortic-endothelial-cell_IL1B_D8 GSE139377.RELA.aortic-endothelial-cell_IL1B_D8 92 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 282 bp overlap
RELB 2 datasets
ChIP GM12878 ENCFF217ADF 282 bp overlap
ChIP GM12878 ENCSR387QUV.RELB.GM12878 282 bp overlap
REST 3 datasets
ChIP A-549 ENCSR000BQP.REST.A-549 169 bp overlap
ChIP HL-60 ENCFF589LOF 108 bp overlap
ChIP liver ENCSR867WPH.REST.liver 177 bp overlap
RUNX1 2 datasets
ChIP BCP-ALL_patient1 GSE109377.RUNX1.BCP-ALL_patient1 282 bp overlap
ChIP NALM-6 GSE126300.RUNX1.NALM-6 153 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 186 bp overlap
RXRA 2 datasets
ChIP liver ENCFF077DAP 236 bp overlap
ChIP liver ENCFF807CIA 266 bp overlap
SIN3A 2 datasets
ChIP A-549 ENCSR513XQX.SIN3A.A-549 282 bp overlap
ChIP HUVEC-C GSE103245.SIN3A.HUVEC-C 178 bp overlap
SMARCA4 3 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 133 bp overlap
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 228 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 282 bp overlap
SMARCC1 1 dataset
ChIP TTC-549_NoDox GSE71504.SMARCC1.TTC-549_NoDox 237 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 282 bp overlap
SMC1A 1 dataset
ChIP A-549 GSE76893.SMC1A.A-549 125 bp overlap
SMC3 1 dataset
ChIP peripheral-blood-neutrophil_Ecoli-1 GSE126755.SMC3.peripheral-blood-neutrophil_Ecoli-1 282 bp overlap
SPI1 2 datasets
ChIP GM12891 ENCFF563IUT 180 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 140 bp overlap
SREBP2 1 dataset
ChIP monocyte GSE129202.SREBP2.monocyte 282 bp overlap
STAG2 1 dataset
ChIP HCAEC GSE101921.STAG2.HCAEC 149 bp overlap
STAT1 1 dataset
ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 249 bp overlap
STAT3 1 dataset
ChIP B-cell GSE123398.STAT3.B-cell 282 bp overlap
SUPT5H 3 datasets
ChIP HCT-116_DMSO GSE138548.SUPT5H.HCT-116_DMSO 282 bp overlap
ChIP HCT-116_DMSO_pSer666 GSE138548.SUPT5H.HCT-116_DMSO_pSer666 282 bp overlap
ChIP HCT-116_DMSO_pThr806 GSE138548.SUPT5H.HCT-116_DMSO_pThr806 277 bp overlap
TAF1 3 datasets
ChIP GM12878 ENCSR000BGS.TAF1.GM12878 192 bp overlap
ChIP GM12891 ENCFF254YPA 282 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 122 bp overlap
TAF3 1 dataset
ChIP HCT-116 GSE43539.TAF3.HCT-116 282 bp overlap
TCF12 1 dataset
ChIP A-549 ENCSR000BQQ.TCF12.A-549 200 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 197 bp overlap
YY1 1 dataset
ChIP liver ENCFF400MBC 271 bp overlap