chr3 : 149,197,375 149,197,971
596 bp 99 TFs 1 linked gene
This 596 bp open chromatin element is linked to CP and is bound by 99 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
CP 481 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:149,192,375 – 149,202,971
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
99 transcription factors
Source
Cell type
AR 1 dataset
ChIP WTC11 ENCFF267GQJ 301 bp overlap
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 143 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 79 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 52 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 300 bp overlap
ATF2 2 datasets
ChIP WA01 ENCSR000BQU.ATF2.WA01 308 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 189 bp overlap
BCL11A 3 datasets
ChIP H1 ENCFF836SSR 145 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 109 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 102 bp overlap
BCOR 4 datasets
ChIP WA01 GSE104690.BCOR.WA01 195 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 252 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 178 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 205 bp overlap
BRD4 5 datasets
ChIP HUVEC-C GSE60171.BRD4.HUVEC-C 165 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 112 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 134 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 216 bp overlap
ChIP hESC GSE33281.BRD4.hESC 144 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 596 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 181 bp overlap
CEBPA 1 dataset
ChIP T-47D_progesterone GSE132649.CEBPA.T-47D_progesterone 130 bp overlap
CEBPB 5 datasets
ChIP H1 ENCFF871PTR 148 bp overlap
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 178 bp overlap
ChIP K-562 ENCSR000EHE.CEBPB.K-562 97 bp overlap
ChIP K562 ENCFF584CTB 283 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 79 bp overlap
CEBPG 2 datasets
ChIP K-562 ENCSR490LWA.CEBPG.K-562 214 bp overlap
ChIP K562 ENCFF956TPS 266 bp overlap
CHD1 4 datasets
ChIP H1 ENCFF128BID 296 bp overlap
ChIP H1 ENCFF998XEK 304 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 596 bp overlap
ChIP WA01 ENCSR000EBU.CHD1.WA01 254 bp overlap
CHD2 1 dataset
ChIP WA01 ENCSR000EBT.CHD2.WA01 88 bp overlap
CHD7 2 datasets
ChIP WA01 ENCSR000AVA.CHD7.WA01 191 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 233 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCFF432ZEW 272 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 256 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 398 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 270 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 181 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF844FIP 50 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 197 bp overlap
EGR1 1 dataset
ChIP WA01 ENCSR000BJA.EGR1.WA01 122 bp overlap
EMX1 1 dataset
ChIP WTC11 ENCFF692RZJ 403 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 297 bp overlap
ERG 2 datasets
ChIP ME-1 GSE46044.ERG.ME-1 200 bp overlap
ChIP WTC11 ENCFF011YUL 192 bp overlap
ETS1 2 datasets
ChIP GM23338 ENCFF701IZH 261 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 146 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 308 bp overlap
EZH2 2 datasets
ChIP Jurkat_KO GSE147198.EZH2.Jurkat_KO 108 bp overlap
ChIP hESC GSE113817.EZH2.hESC 201 bp overlap
FEZF1 1 dataset
ChIP HEK293 GSE76494.FEZF1.HEK293 167 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 325 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 290 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 145 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 298 bp overlap
GATA1 2 datasets
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 118 bp overlap
ChIP erythroid-progenitor GSE124163.GATA1.erythroid-progenitor 91 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 250 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 474 bp overlap
ChIP DE DE-GATA4-2 487 bp overlap
ChIP foregut GSE117136.GATA4.foregut 522 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 440 bp overlap
ChIP DE DE-GATA6-2 596 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 596 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 596 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 596 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 596 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 596 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 449 bp overlap
ChIP foregut GSE117136.GATA6.foregut 268 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 382 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 193 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 264 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 200 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 184 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 303 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF353UJQ 211 bp overlap
ChIP H1 ENCFF939VKA 208 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 170 bp overlap
HLF 1 dataset
ChIP HepG2 ENCFF854JLR 124 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 163 bp overlap
JUN 9 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 400 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 374 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 432 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 225 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 367 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 234 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 217 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 455 bp overlap
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 195 bp overlap
JUND 2 datasets
ChIP H1 ENCFF468JZD 218 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 130 bp overlap
KLF4 2 datasets
ChIP WA09 GSE105028.KLF4.WA09 180 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 140 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 171 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 271 bp overlap
MED1 2 datasets
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 51 bp overlap
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 310 bp overlap
MEIS2 1 dataset
ChIP K-562 ENCSR851BNE.MEIS2.K-562 205 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 211 bp overlap
MYCN 1 dataset
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 256 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 262 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 147 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 308 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 171 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 201 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 296 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 51 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 260 bp overlap
ChIP hESC GSE20650.NANOG.hESC 178 bp overlap
NIPBL 2 datasets
ChIP WA09 GSE105028.NIPBL.WA09 466 bp overlap
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 311 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 388 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 99 bp overlap
PKNOX1 3 datasets
ChIP HEK293T ENCFF174WDB 314 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 239 bp overlap
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 362 bp overlap
POLR2A 6 datasets
ChIP GM23338 ENCFF450WCS 231 bp overlap
ChIP H1 ENCFF566JSR 303 bp overlap
ChIP H1 ENCFF770YBQ 424 bp overlap
ChIP H1 ENCFF833NJP 253 bp overlap
ChIP neural cell ENCFF604SPB 335 bp overlap
ChIP right lobe of liver ENCFF026NCK 500 bp overlap
POU5F1 11 datasets
ChIP BG03 GSE21614.POU5F1.BG03 170 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 271 bp overlap
ChIP GM23338 ENCFF333SNB 262 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 404 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 124 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 197 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 114 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 155 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 200 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 138 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 124 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 262 bp overlap
RAD21 1 dataset
ChIP H1 ENCFF698EWO 241 bp overlap
RNF2 1 dataset
ChIP K-562 ENCSR820GND.RNF2.K-562 448 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 226 bp overlap
SIN3A 3 datasets
ChIP H1 ENCFF042ZSL 463 bp overlap
ChIP H1 ENCFF896IJG 260 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 137 bp overlap
SIX4 1 dataset
ChIP WTC11 ENCFF891HYW 279 bp overlap
SMAD2 2 datasets
ChIP endoderm GSE29422.SMAD2.endoderm 166 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 250 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 318 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 522 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 422 bp overlap
SMAD2_3 6 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 394 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 443 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 405 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 442 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 520 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 301 bp overlap
SMAD3 6 datasets
ChIP BG03 GSE21614.SMAD3.BG03 190 bp overlap
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 230 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 204 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 202 bp overlap
ChIP WTC11 ENCFF815YYQ 269 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 208 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 158 bp overlap
SMARCA4 5 datasets
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 79 bp overlap
ChIP WA09 GSE105028.SMARCA4.WA09 79 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 315 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 596 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 596 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 526 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 200 bp overlap
SMARCC1 5 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 474 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 545 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 399 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 596 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 225 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 207 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 330 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 241 bp overlap
SOX6 1 dataset
ChIP K-562 ENCSR788RSW.SOX6.K-562 274 bp overlap
SP1 4 datasets
ChIP H1 ENCFF263FUH 210 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 217 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 176 bp overlap
ChIP WTC11 ENCFF688PEU 342 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 235 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 253 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 391 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 188 bp overlap
TAF7 3 datasets
ChIP H1 ENCFF061XZZ 260 bp overlap
ChIP WA01 ENCSR000BLU.TAF7.WA01 122 bp overlap
ChIP WA01 ENCSR000BLU.TAF7.WA01 162 bp overlap
TAL1 1 dataset
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 158 bp overlap
TBP 3 datasets
ChIP H1 ENCFF859IIO 293 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 72 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 137 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 206 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 167 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 309 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 245 bp overlap
TP53 3 datasets
ChIP H9 GSE142050.TP53.H9 340 bp overlap
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 450 bp overlap
ChIP H9_mesoderm GSE142050.TP53.H9_mesoderm 264 bp overlap
TWIST1 1 dataset
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 278 bp overlap
YY1 2 datasets
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 129 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 182 bp overlap
ZBTB33 1 dataset
ChIP WTC11 ENCFF048CFR 299 bp overlap
ZBTB43 1 dataset
ChIP WTC11 ENCFF058JUB 302 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 224 bp overlap
ZNF10 1 dataset
ChIP HEK293 ENCSR019WUS.ZNF10.HEK293 217 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 297 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 215 bp overlap