chr1 : 56,452,017 56,452,901
884 bp 96 TFs 0 linked genes
This 884 bp open chromatin element has no linked target genes and is bound by 96 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:56,447,017 – 56,457,901
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
96 transcription factors
Source
Cell type
AR 6 datasets
ChIP 22Rv1 GSE85558.AR.22Rv1 154 bp overlap
ChIP prostate GSE56288.AR.prostate 299 bp overlap
ChIP prostate_1816_T GSE130408.AR.prostate_1816_T 219 bp overlap
ChIP prostate_4024_T GSE130408.AR.prostate_4024_T 195 bp overlap
ChIP prostate_P1 GSE130408.AR.prostate_P1 332 bp overlap
ChIP prostate_P27 GSE130408.AR.prostate_P27 267 bp overlap
ASH2L 1 dataset
ChIP H1 ENCFF399KAM 595 bp overlap
Arid5a 1 dataset
Motif DE_12h DE_12h-Arid5a_MA0602.2 8 bp overlap
BRD4 3 datasets
ChIP HAP1 GSE108387.BRD4.HAP1 396 bp overlap
ChIP HUVEC-C_TNF GSE53998.BRD4.HUVEC-C_TNF 322 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 324 bp overlap
CCAR2 1 dataset
ChIP Hep-G2 ENCSR247XFV.CCAR2.Hep-G2 174 bp overlap
CTCF 1 dataset
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 219 bp overlap
EGR1 2 datasets
ChIP HepG2 ENCFF674RQO 326 bp overlap
ChIP HepG2 ENCFF674RQO 532 bp overlap
EP300 2 datasets
ChIP tibial nerve ENCFF346AYA 456 bp overlap
ChIP upper lobe of left lung ENCFF024QBJ 261 bp overlap
ETV1 1 dataset
ChIP GIST GSE22441.ETV1.GIST 123 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 260 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 408 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 202 bp overlap
FLI1 1 dataset
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 268 bp overlap
FOS 1 dataset
ChIP myometrium_PT886 GSE128230.FOS.myometrium_PT886 106 bp overlap
FOSL2 1 dataset
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 258 bp overlap
GATA6 4 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 518 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 474 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 558 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 498 bp overlap
GATAD2A 1 dataset
ChIP HepG2 ENCFF252XNH 91 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 378 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 459 bp overlap
GTF3A 1 dataset
ChIP HepG2 ENCFF268DGX 60 bp overlap
HNF4A 4 datasets
ChIP GP5D GSE51234.HNF4A.GP5D 59 bp overlap
ChIP IM95 GSE114018.HNF4A.IM95 82 bp overlap
ChIP LoVo_PHASES GSE51290.HNF4A.LoVo_PHASES 87 bp overlap
ChIP liver ENCFF449HPV 72 bp overlap
HOXB13 1 dataset
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 59 bp overlap
HOXB8 2 datasets
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 114 bp overlap
ChIP PANC-1 GSE119930.HOXB8.PANC-1 61 bp overlap
IKZF2 1 dataset
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 415 bp overlap
IRF2 1 dataset
Motif DE_12h DE_12h-IRF2_MA0051.2 16 bp overlap
JUN 3 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 458 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 324 bp overlap
ChIP myometrium_PT886 GSE128230.JUN.myometrium_PT886 59 bp overlap
KDM1A 8 datasets
ChIP H1 ENCFF696SGD 317 bp overlap
ChIP HepG2 ENCFF240UWG 471 bp overlap
ChIP HepG2 ENCFF240UWG 51 bp overlap
ChIP HepG2 ENCFF730KKG 147 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 258 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 229 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 142 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 106 bp overlap
MAX 1 dataset
ChIP HepG2 ENCFF479OHI 61 bp overlap
MED1 9 datasets
ChIP HepG2 ENCFF495TSS 277 bp overlap
ChIP SGBS_TNF GSE64233.MED1.SGBS_TNF 204 bp overlap
ChIP U-87MG GSE36354.MED1.U-87MG 237 bp overlap
ChIP hMSC-TERT4_D14 GSE104537.MED1.hMSC-TERT4_D14 389 bp overlap
ChIP hMSC-TERT4_D7 GSE104537.MED1.hMSC-TERT4_D7 344 bp overlap
ChIP hMSC-TERT4_adipocyte-D14 GSE113253.MED1.hMSC-TERT4_adipocyte-D14 184 bp overlap
ChIP hMSC-TERT4_adipocyte-D3 GSE113253.MED1.hMSC-TERT4_adipocyte-D3 385 bp overlap
ChIP hMSC-TERT4_adipocyte-D7 GSE113253.MED1.hMSC-TERT4_adipocyte-D7 384 bp overlap
ChIP myoblast GSE60026.MED1.myoblast 437 bp overlap
MED12 4 datasets
ChIP leiomyoma_PT1063 GSE128230.MED12.leiomyoma_PT1063 59 bp overlap
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 98 bp overlap
ChIP myometrium_PT886 GSE128230.MED12.myometrium_PT886 100 bp overlap
ChIP myometrium_PT916 GSE128230.MED12.myometrium_PT916 152 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 145 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 221 bp overlap
MZF1 1 dataset
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 354 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 252 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 581 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 274 bp overlap
NCOR1 1 dataset
ChIP HepG2 ENCFF685NAH 172 bp overlap
NFATC3 2 datasets
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
ChIP GM12878 ENCSR437GBJ.NFATC3.GM12878 238 bp overlap
NFKB2 1 dataset
Motif DE_12h DE_12h-NFKB2_MA0778.2 11 bp overlap
NR2F2 3 datasets
ChIP liver ENCFF427MRU 421 bp overlap
ChIP liver ENCSR168SMX.NR2F2.liver 271 bp overlap
ChIP liver ENCSR338MMB.NR2F2.liver 167 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Nr2e3 1 dataset
Motif DE_12h DE_12h-Nr2e3_MA0164.2 6 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 186 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 317 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 234 bp overlap
PGR 3 datasets
ChIP endometrium_Midsecretory GSE132712.PGR.endometrium_Midsecretory 376 bp overlap
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 395 bp overlap
ChIP myometrium_TP1 GSE137550.PGR.myometrium_TP1 244 bp overlap
PHIP 2 datasets
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 302 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 224 bp overlap
PITX1 1 dataset
ChIP HepG2 ENCFF468QTQ 213 bp overlap
PKNOX1 1 dataset
ChIP HEK293T ENCFF174WDB 391 bp overlap
PLAG1 1 dataset
Motif DE_12h DE_12h-PLAG1_MA0163.1 14 bp overlap
POLR2A 13 datasets
ChIP breast epithelium ENCFF960NNA 431 bp overlap
ChIP esophagus muscularis mucosa ENCFF432ZCY 465 bp overlap
ChIP esophagus muscularis mucosa ENCFF759BBR 391 bp overlap
ChIP esophagus muscularis mucosa ENCFF759BBR 391 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 531 bp overlap
ChIP gastroesophageal sphincter ENCFF070PCA 281 bp overlap
ChIP sigmoid colon ENCFF101ILL 321 bp overlap
ChIP sigmoid colon ENCFF725QFT 197 bp overlap
ChIP sigmoid colon ENCFF754JQR 365 bp overlap
ChIP stomach ENCFF278MYS 241 bp overlap
ChIP stomach ENCFF820WZN 165 bp overlap
ChIP transverse colon ENCFF607LKE 371 bp overlap
ChIP upper lobe of left lung ENCFF199JUI 120 bp overlap
POU5F1 1 dataset
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 314 bp overlap
PPARG 1 dataset
ChIP ASC GSE21366.PPARG.ASC 258 bp overlap
PRDM6 2 datasets
ChIP HEK293 ENCFF283AJL 181 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 257 bp overlap
RARA 1 dataset
Motif DE_12h DE_12h-RARA_MA0730.1 17 bp overlap
RBM25 1 dataset
ChIP K-562 ENCSR791OZM.RBM25.K-562 152 bp overlap
RCOR2 1 dataset
ChIP HepG2 ENCFF310RFX 238 bp overlap
REL 1 dataset
Motif DE_12h DE_12h-REL_MA0101.1 10 bp overlap
RELA 8 datasets
ChIP 786-O GSE86092.RELA.786-O 269 bp overlap
Motif DE_12h DE_12h-RELA_MA0107.1 10 bp overlap
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 777 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 175 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 225 bp overlap
ChIP IMR-90_TNF GSE43070.RELA.IMR-90_TNF 170 bp overlap
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 329 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 649 bp overlap
RELB 2 datasets
Motif DE_12h DE_12h-RELB_MA1117.2 7 bp overlap
ChIP GM12878 ENCSR387QUV.RELB.GM12878 520 bp overlap
REST 2 datasets
ChIP colorectal-cancer_CRC121_intact GSE112555.REST.colorectal-cancer_CRC121_intact 102 bp overlap
ChIP liver ENCFF577AZT 149 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 254 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 396 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 333 bp overlap
SMARCA2 5 datasets
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 401 bp overlap
ChIP NPC_K755R-pos_ab GSE122631.SMARCA2.NPC_K755R-pos_ab 226 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA2.NPC_K755R-siAP 332 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 361 bp overlap
ChIP NPC_R1159Q GSE122631.SMARCA2.NPC_R1159Q 427 bp overlap
SMARCA4 5 datasets
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 282 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 380 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 255 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 266 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 408 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 289 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SREBF1 1 dataset
Motif DE_12h DE_12h-SREBF1_MA0595.1 10 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 324 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 278 bp overlap
TLE3 2 datasets
ChIP LNCaP GSE94682.TLE3.LNCaP 206 bp overlap
ChIP LNCaP_r1881 GSE94682.TLE3.LNCaP_r1881 252 bp overlap
WT1 2 datasets
ChIP HEK293 ENCFF906HIR 237 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 507 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 144 bp overlap
ZBTB6 1 dataset
ChIP HEK293 GSE76494.ZBTB6.HEK293 166 bp overlap
ZKSCAN1 3 datasets
ChIP Hep-G2 ENCSR157CAU.ZKSCAN1.Hep-G2 284 bp overlap
ChIP HepG2 ENCFF578KDY 272 bp overlap
ChIP K-562 ENCSR882ERE.ZKSCAN1.K-562 164 bp overlap
ZMYM3 4 datasets
ChIP GM12878 GSE97661.ZMYM3.GM12878 503 bp overlap
ChIP Hep-G2 ENCSR848YWD.ZMYM3.Hep-G2 143 bp overlap
ChIP Hep-G2_AC_JH39-2-2B9 GSE97661.ZMYM3.Hep-G2_AC_JH39-2-2B9 325 bp overlap
ChIP HepG2 ENCFF408KTI 230 bp overlap
ZNF121 1 dataset
ChIP HEK293 GSE76494.ZNF121.HEK293 249 bp overlap
ZNF217 2 datasets
ChIP GM12878 ENCFF978IGL 465 bp overlap
ChIP GM12878 ENCSR764CZW.ZNF217.GM12878 449 bp overlap
ZNF24 3 datasets
ChIP GM12878 ENCFF688STO 341 bp overlap
ChIP GM12878 ENCSR072PWP.ZNF24.GM12878 320 bp overlap
ChIP Hep-G2 ENCSR362NWP.ZNF24.Hep-G2 93 bp overlap
ZNF257 1 dataset
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
ZNF322 1 dataset
ChIP HEK293 GSE76494.ZNF322.HEK293 181 bp overlap
ZNF341 1 dataset
ChIP HEK293 GSE76494.ZNF341.HEK293 131 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 238 bp overlap
ZNF549 1 dataset
ChIP HEK293 GSE76494.ZNF549.HEK293 157 bp overlap
ZNF554 1 dataset
ChIP HEK293 GSE76494.ZNF554.HEK293 138 bp overlap
ZNF629 2 datasets
ChIP Hep-G2 ENCSR363ASY.ZNF629.Hep-G2 134 bp overlap
ChIP HepG2 ENCFF490FFQ 82 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 176 bp overlap
ZNF691 1 dataset
ChIP HepG2 ENCFF427OHT 481 bp overlap
ZNF766 1 dataset
Motif DE_12h DE_12h-ZNF766_MA2098.1 9 bp overlap
ZSCAN5C 2 datasets
ChIP HEK293 ENCFF343DTU 357 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 290 bp overlap
Znf423 1 dataset
Motif DE_12h DE_12h-Znf423_MA0116.1 15 bp overlap