chr1 : 54,498,149 54,499,218
1,069 bp 117 TFs 0 linked genes
This 1.1 kb open chromatin element has no linked target genes and is bound by 117 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:54,493,149 – 54,504,218
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
117 transcription factors
Source
Cell type
AGO1 1 dataset
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 186 bp overlap
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 273 bp overlap
AR 1 dataset
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 71 bp overlap
ARNT 2 datasets
ChIP MCF-7_Ctrl GSE85352.ARNT.MCF-7_Ctrl 334 bp overlap
ChIP MCF-7_aza GSE85352.ARNT.MCF-7_aza 315 bp overlap
ATRX 2 datasets
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 256 bp overlap
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 227 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 55 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 134 bp overlap
BRD1 2 datasets
ChIP HUES-64 GSE104059.BRD1.HUES-64 211 bp overlap
ChIP HUES-64 GSE104059.BRD1.HUES-64 195 bp overlap
BRD2 1 dataset
ChIP NCI-H23 GSE104481.BRD2.NCI-H23 95 bp overlap
BRD4 6 datasets
ChIP HCT-15 GSE73319.BRD4.HCT-15 455 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 431 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 320 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 668 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 109 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 390 bp overlap
CBFB 1 dataset
ChIP SaOS-2 GSE76937.CBFB.SaOS-2 211 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 237 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 83 bp overlap
CTCF 30 datasets
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 318 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 249 bp overlap
ChIP BJ ENCSR000DQI.CTCF.BJ 125 bp overlap
ChIP CD14-positive monocyte ENCFF087XLR 77 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 263 bp overlap
ChIP FT282 GSE131931.CTCF.FT282 189 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 338 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 201 bp overlap
ChIP HeLa_dC9Sun-D3A_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3A_MIR152 127 bp overlap
ChIP Loucy ENCFF359TVQ 417 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 358 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 188 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 201 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 86 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 207 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 239 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 260 bp overlap
ChIP aorta_thoracic ENCSR668BTN.CTCF.aorta_thoracic 185 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 136 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 279 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 221 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 168 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 80 bp overlap
ChIP delta-47 GSE70764.CTCF.delta-47 174 bp overlap
ChIP erythroid GSE67783.CTCF.erythroid 243 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 131 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 234 bp overlap
ChIP natural killer cell ENCFF517SNI 74 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 167 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 239 bp overlap
CTCFL 2 datasets
ChIP FT282 GSE131931.CTCFL.FT282 226 bp overlap
ChIP OVCAR-8 GSE70764.CTCFL.OVCAR-8 147 bp overlap
CTCF_s 1 dataset
ChIP HeLa-S3_biotin GSE108869.CTCF_s.HeLa-S3_biotin 158 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 291 bp overlap
EBF1 1 dataset
Motif DE_24h DE_24h-EBF1_MA0154.5 11 bp overlap
EBF3 1 dataset
Motif DE_24h DE_24h-EBF3_MA1637.2 9 bp overlap
ELF3 2 datasets
Motif DE_24h DE_24h-ELF3_MA0640.3 9 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 319 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 139 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 597 bp overlap
ETV1 1 dataset
Motif DE_24h DE_24h-ETV1_MA0761.3 9 bp overlap
EZH2 8 datasets
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 96 bp overlap
ChIP PC-9 ENCSR793USK.EZH2.PC-9 274 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 649 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 246 bp overlap
ChIP T98G GSE112240.EZH2.T98G 75 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 325 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 187 bp overlap
ChIP neural progenitor cell ENCFF472NFV 683 bp overlap
Ebf2 1 dataset
Motif DE_24h DE_24h-Ebf2_MA1604.2 9 bp overlap
FOS 1 dataset
ChIP Hep-G2 ENCSR177HDZ.FOS.Hep-G2 73 bp overlap
FOXA1 9 datasets
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 191 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 66 bp overlap
ChIP MCF-7 GSE140185.FOXA1.MCF-7 160 bp overlap
ChIP MCF-7 GSE140185.FOXA1.MCF-7 120 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 325 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 223 bp overlap
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 102 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 144 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 157 bp overlap
FOXA2 6 datasets
ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 178 bp overlap
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 260 bp overlap
ChIP DE DE-FOXA2-1 269 bp overlap
ChIP HepG2 ENCFF533COJ 171 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 256 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 379 bp overlap
GATA6 2 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 287 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 412 bp overlap
GLIS1 3 datasets
Motif DE_24h DE_24h-GLIS1_MA0735.2 15 bp overlap
ChIP HEK293 ENCFF299RSE 312 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 445 bp overlap
GLIS2 1 dataset
Motif DE_24h DE_24h-GLIS2_MA0736.1 14 bp overlap
GLIS3 2 datasets
Motif DE_24h DE_24h-GLIS3_MA0737.1 14 bp overlap
ChIP H9_plus GSE109562.GLIS3.H9_plus 574 bp overlap
GTF3C2 2 datasets
ChIP H9 GSE94418.GTF3C2.H9 215 bp overlap
ChIP H9 GSE94418.GTF3C2.H9 113 bp overlap
HAND2 1 dataset
ChIP Kelly GSE94822.HAND2.Kelly 128 bp overlap
HDAC8 1 dataset
ChIP K-562 ENCSR000DJZ.HDAC8.K-562 166 bp overlap
HIC1 1 dataset
ChIP HEK293 ENCSR803GYT.HIC1.HEK293 261 bp overlap
HNF4A 1 dataset
ChIP gastric-epithelial-cell_OE GSE114018.HNF4A.gastric-epithelial-cell_OE 90 bp overlap
HNRNPL 4 datasets
ChIP Hep-G2 ENCSR315JJE.HNRNPL.Hep-G2 277 bp overlap
ChIP Hep-G2 GSE120104.HNRNPL.Hep-G2 266 bp overlap
ChIP HepG2 ENCFF671UYF 402 bp overlap
ChIP HepG2 ENCFF684GAM 402 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 491 bp overlap
IKZF1 1 dataset
Motif DE_24h DE_24h-IKZF1_MA1508.2 8 bp overlap
IKZF2 1 dataset
Motif DE_24h DE_24h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_24h DE_24h-Ikzf3_MA1992.2 9 bp overlap
JARID2 2 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 260 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 212 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 408 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 412 bp overlap
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 626 bp overlap
JUND 1 dataset
ChIP Hep-G2 ENCSR000BGK.JUND.Hep-G2 102 bp overlap
KDM1A 2 datasets
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 243 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 84 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 217 bp overlap
MCRS1 1 dataset
ChIP Huh-7 GSE97411.MCRS1.Huh-7 188 bp overlap
MED1 2 datasets
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 83 bp overlap
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 228 bp overlap
MED26 2 datasets
ChIP HEK293T GSE121024.MED26.HEK293T 183 bp overlap
ChIP HEK293T GSE121024.MED26.HEK293T 86 bp overlap
MITF 1 dataset
ChIP melanocyte_BRAFV600E GSE50681.MITF.melanocyte_BRAFV600E 210 bp overlap
MNX1 1 dataset
ChIP Hep-G2 ENCSR108MKR.MNX1.Hep-G2 160 bp overlap
MTA3 1 dataset
ChIP K-562 ENCSR180NCY.MTA3.K-562 350 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 450 bp overlap
MYBL2 2 datasets
ChIP A-673 GSE119971.MYBL2.A-673 284 bp overlap
ChIP A-673 GSE119971.MYBL2.A-673 240 bp overlap
MYCN 3 datasets
ChIP Kelly GSE94822.MYCN.Kelly 129 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 222 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 62 bp overlap
MYNN 1 dataset
ChIP Hep-G2 ENCSR398TMP.MYNN.Hep-G2 131 bp overlap
MYOD1 2 datasets
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 302 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 111 bp overlap
MYOG 1 dataset
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 220 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 255 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 171 bp overlap
PHIP 4 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 206 bp overlap
ChIP HCT-116_MLL4-SET-KO_ab833 GSE101646.PHIP.HCT-116_MLL4-SET-KO_ab833 53 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 190 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 85 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 274 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 196 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 413 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 666 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 360 bp overlap
RAD21 3 datasets
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 164 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 121 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 190 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 271 bp overlap
RBM39 4 datasets
ChIP Hep-G2 ENCSR339JTP.RBM39.Hep-G2 211 bp overlap
ChIP Hep-G2 GSE120104.RBM39.Hep-G2 217 bp overlap
ChIP HepG2 ENCFF084YZE 290 bp overlap
ChIP HepG2 ENCFF801JUH 269 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 123 bp overlap
RUNX1 1 dataset
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 112 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 163 bp overlap
RUNX2 1 dataset
ChIP SaOS-2 GSE76937.RUNX2.SaOS-2 167 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 283 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 417 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 449 bp overlap
SCRT2 2 datasets
ChIP HEK293 ENCFF711QQB 383 bp overlap
ChIP HEK293 ENCFF711QQB 299 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 453 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 389 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 278 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 276 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 227 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 279 bp overlap
SMARCA4 4 datasets
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 61 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 238 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 110 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 159 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 394 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 189 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 482 bp overlap
SMC1 2 datasets
ChIP DKO GSE131606.SMC1.DKO 346 bp overlap
ChIP HCAEC GSE101921.SMC1.HCAEC 341 bp overlap
SOX11 1 dataset
ChIP GRANT-A519 GSE52146.SOX11.GRANT-A519 90 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 239 bp overlap
SUZ12 2 datasets
ChIP Karpas-422_CPI360-D4 GSE134136.SUZ12.Karpas-422_CPI360-D4 284 bp overlap
ChIP NT2/D1 ENCFF574SXS 220 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 271 bp overlap
TAF3 2 datasets
ChIP HCT-116 GSE43539.TAF3.HCT-116 151 bp overlap
ChIP HCT-116 GSE43539.TAF3.HCT-116 78 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 205 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 157 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 155 bp overlap
TFAP4 2 datasets
ChIP K562 ENCFF727PXG 545 bp overlap
ChIP K562 ENCFF727PXG 533 bp overlap
TRIM28 2 datasets
ChIP HEK293 ENCSR618HNF.TRIM28.HEK293 263 bp overlap
ChIP U2OS ENCSR000EYC.TRIM28.U2OS 263 bp overlap
USF1 2 datasets
ChIP Hep-G2 ENCSR000BGM.USF1.Hep-G2 100 bp overlap
ChIP HepG2 ENCFF807KYJ 201 bp overlap
VEZF1 1 dataset
Motif DE_24h DE_24h-VEZF1_MA1578.2 6 bp overlap
ZBTB24 2 datasets
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 150 bp overlap
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 355 bp overlap
ZBTB26 1 dataset
ChIP HEK293 ENCFF752TCU 187 bp overlap
ZC3H8 1 dataset
ChIP HCT-116 GSE47938.ZC3H8.HCT-116 338 bp overlap
ZFX 1 dataset
ChIP HEK293T ENCFF402JZW 691 bp overlap
ZIC4 1 dataset
Motif DE_24h DE_24h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_24h DE_24h-ZIC5_MA1584.2 15 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 297 bp overlap
ZNF148 2 datasets
ChIP K-562 GSE121133.ZNF148.K-562 433 bp overlap
ChIP K-562 ENCSR018MSO.ZNF148.K-562 300 bp overlap
ZNF175 1 dataset
Motif DE_24h DE_24h-ZNF175_MA2332.1 9 bp overlap
ZNF184 1 dataset
ChIP WTC11 ENCFF352POG 497 bp overlap
ZNF205 1 dataset
ChIP HepG2 ENCFF931LZG 232 bp overlap
ZNF281 1 dataset
ChIP K-562 GSE121133.ZNF281.K-562 826 bp overlap
ZNF341 3 datasets
ChIP HEK293 ENCFF944VMC 521 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 372 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 155 bp overlap
ZNF468 1 dataset
ChIP HEK293T GSE78099.ZNF468.HEK293T 232 bp overlap
ZNF680 4 datasets
Motif DE_24h DE_24h-ZNF680_MA1729.2 11 bp overlap
ChIP HEK293 ENCFF418WHE 381 bp overlap
ChIP HEK293 ENCSR307CKC.ZNF680.HEK293 324 bp overlap
ChIP HEK293 GSE76494.ZNF680.HEK293 227 bp overlap
ZNF711 2 datasets
ChIP HEK293T GSE145160.ZNF711.HEK293T 444 bp overlap
ChIP HEK293T GSE145160.ZNF711.HEK293T 90 bp overlap
ZNF740 1 dataset
Motif DE_24h DE_24h-ZNF740_MA0753.3 10 bp overlap
ZNF823 1 dataset
ChIP HEK293T GSE78099.ZNF823.HEK293T 290 bp overlap
Znf423 1 dataset
Motif DE_24h DE_24h-Znf423_MA0116.1 15 bp overlap