chr1 : 54,325,770 54,326,193
423 bp 101 TFs 0 linked genes
This 423 bp open chromatin element has no linked target genes and is bound by 101 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:54,320,770 – 54,331,193
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
101 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 77 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 54 bp overlap
BRD4 13 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 128 bp overlap
ChIP CLB-Ga_Dinaciclib GSE133453.BRD4.CLB-Ga_Dinaciclib 193 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 281 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 130 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 141 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 58 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 258 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 81 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 365 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 423 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 240 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 297 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 203 bp overlap
CEBPB 1 dataset
ChIP K562 ENCFF584CTB 97 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 140 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 156 bp overlap
CRX 4 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 413 bp overlap
ChIP retina_Hu21 GSE137311.CRX.retina_Hu21 342 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 257 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 423 bp overlap
CTCF 4 datasets
ChIP Kasumi-1_ctrl GSE121280.CTCF.Kasumi-1_ctrl 92 bp overlap
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 261 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 423 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 423 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 216 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 87 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 155 bp overlap
ERG 2 datasets
ChIP HUVEC-C GSE124891.ERG.HUVEC-C 66 bp overlap
ChIP HUVEC-C GSE128382.ERG.HUVEC-C 54 bp overlap
ETS1 4 datasets
ChIP HUVEC-C_12h GSE93030.ETS1.HUVEC-C_12h 57 bp overlap
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 62 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.ETS1.HUVEC-C_VEGF_12h 57 bp overlap
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 61 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCFF528YED 204 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 81 bp overlap
FLI1 1 dataset
ChIP HUVEC-C GSE109695.FLI1.HUVEC-C 54 bp overlap
FOS 2 datasets
ChIP endothelial cell of umbilical vein ENCFF415XBG 119 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVU.FOS.endothelial_umbilical-vein 105 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 421 bp overlap
ChIP DE DE-FOXA2-2 275 bp overlap
GABPA 1 dataset
ChIP SK-N-SH ENCFF755TJJ 117 bp overlap
GATA2 6 datasets
ChIP SH-SY5Y ENCFF485YIB 194 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 400 bp overlap
ChIP SK-N-SH ENCFF764OZD 106 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 184 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 107 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 196 bp overlap
GATA3 8 datasets
ChIP BE2C GSE65664.GATA3.BE2C 184 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 175 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 186 bp overlap
ChIP NGP GSE65664.GATA3.NGP 104 bp overlap
ChIP SH-SY5Y ENCFF475HYF 331 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 318 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 138 bp overlap
ChIP SK-N-SH ENCFF040SSB 109 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 423 bp overlap
ChIP DE DE-GATA4-2 423 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 423 bp overlap
ChIP foregut GSE117136.GATA4.foregut 423 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 423 bp overlap
GATA6 12 datasets
ChIP DE DE-GATA6-1 423 bp overlap
ChIP DE DE-GATA6-2 423 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 423 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 423 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 423 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 423 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 423 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 423 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 423 bp overlap
ChIP foregut GSE117136.GATA6.foregut 423 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 309 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 335 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 263 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 336 bp overlap
GLIS2 1 dataset
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 205 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 233 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 104 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 164 bp overlap
HDGF 1 dataset
ChIP HEK293T ENCSR522LDJ.HDGF.HEK293T 60 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 127 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 97 bp overlap
INSM2 1 dataset
ChIP HEK293 ENCSR382GSF.INSM2.HEK293 243 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 179 bp overlap
JUN 3 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 326 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 87 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 312 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 181 bp overlap
KLF17 2 datasets
ChIP HEK293 ENCFF658MHR 162 bp overlap
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 261 bp overlap
KLF5 2 datasets
ChIP HEK293_E419K GSE88976.KLF5.HEK293_E419K 249 bp overlap
ChIP HEK293_E419K GSE88976.KLF5.HEK293_E419K 54 bp overlap
KMT2A 2 datasets
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 381 bp overlap
ChIP HEK293T_N-term_C49 GSE90762.KMT2A.HEK293T_N-term_C49 421 bp overlap
MAML3 1 dataset
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 190 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 305 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 184 bp overlap
MAZ 2 datasets
ChIP HEK293 ENCFF994GSG 135 bp overlap
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 242 bp overlap
MED1 1 dataset
ChIP NCI-H2171 GSE36354.MED1.NCI-H2171 58 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 295 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 273 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 423 bp overlap
MXI1 3 datasets
ChIP SK-N-SH ENCFF746HVJ 252 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 219 bp overlap
ChIP neural cell ENCFF623HQN 374 bp overlap
MYC 2 datasets
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 115 bp overlap
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 157 bp overlap
MYCN 5 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 223 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 294 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 357 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 306 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 89 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 423 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 423 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 107 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 423 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 219 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 423 bp overlap
PATZ1 2 datasets
ChIP HEK293 ENCFF016MNJ 121 bp overlap
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 423 bp overlap
PAX7 1 dataset
ChIP H9_DOX GSE98976.PAX7.H9_DOX 160 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 358 bp overlap
PHOX2B 3 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 78 bp overlap
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 237 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 116 bp overlap
POLR2A 5 datasets
ChIP endothelial cell of umbilical vein ENCFF303XUJ 164 bp overlap
ChIP esophagus muscularis mucosa ENCFF759BBR 83 bp overlap
ChIP stomach ENCFF820WZN 75 bp overlap
ChIP upper lobe of left lung ENCFF095BJW 114 bp overlap
ChIP vagina ENCFF384GAB 135 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 135 bp overlap
RAD21 4 datasets
ChIP HUVEC-C_hypoxia GSE94872.RAD21.HUVEC-C_hypoxia 99 bp overlap
ChIP IMR-5 GSE78957.RAD21.IMR-5 132 bp overlap
ChIP SK-N-SH ENCFF747MAS 172 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 167 bp overlap
RBM22 1 dataset
ChIP K-562 GSE120104.RBM22.K-562 199 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 52 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 186 bp overlap
RELA 1 dataset
ChIP HUVEC-C_TNF-60min GSE121890.RELA.HUVEC-C_TNF-60min 131 bp overlap
RFX5 1 dataset
ChIP SK-N-SH ENCFF755HLO 236 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 423 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 71 bp overlap
SIX2 4 datasets
ChIP HEK GSE73865.SIX2.HEK 231 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 168 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 80 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 197 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 423 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 423 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 304 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 226 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 423 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 423 bp overlap
SMARCA4 3 datasets
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 209 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 94 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 346 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 124 bp overlap
SMC3 1 dataset
ChIP HEK293T_CRISPR GSE122299.SMC3.HEK293T_CRISPR 219 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 289 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 378 bp overlap
SP2 1 dataset
ChIP HEK293 ENCFF181QXT 131 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 167 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 226 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 193 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 190 bp overlap
TCF7L2 2 datasets
ChIP HEK293 ENCFF513JQN 126 bp overlap
ChIP HEK293 ENCFF513JQN 348 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 146 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 146 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 198 bp overlap
TOX2 2 datasets
ChIP SK-N-SH ENCFF415OYE 85 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR226NRS.TOX2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 82 bp overlap
TRIM28 4 datasets
ChIP HEK293 ENCFF265CEM 264 bp overlap
ChIP HEK293 ENCFF582MWI 272 bp overlap
ChIP HEK293 ENCSR618HNF.TRIM28.HEK293 151 bp overlap
ChIP U2OS ENCSR000EYC.TRIM28.U2OS 155 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 393 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 191 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 191 bp overlap
WT1 2 datasets
ChIP HEK293 ENCFF906HIR 224 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 423 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 179 bp overlap
YY2 1 dataset
ChIP HEK293 ENCSR692HSE.YY2.HEK293 301 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 182 bp overlap
ZBTB20 2 datasets
ChIP HEK293 ENCFF524ADK 112 bp overlap
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 139 bp overlap
ZBTB33 2 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 235 bp overlap
ChIP K562 ENCFF875HLX 246 bp overlap
ZBTB44 2 datasets
ChIP HEK293 ENCFF560VPN 213 bp overlap
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 121 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 294 bp overlap
ZEB2 2 datasets
ChIP HEK293 ENCFF847JIE 89 bp overlap
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 423 bp overlap
ZNF2 2 datasets
ChIP HEK293 ENCFF641ICT 199 bp overlap
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 172 bp overlap
ZNF24 2 datasets
ChIP HEK293 ENCFF308WOW 286 bp overlap
ChIP HEK293 ENCSR984MDV.ZNF24.HEK293 359 bp overlap
ZNF257 1 dataset
ChIP HEK293T GSE78099.ZNF257.HEK293T 54 bp overlap
ZNF341 1 dataset
ChIP HEK293 GSE76494.ZNF341.HEK293 89 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 203 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 92 bp overlap
ZNF398 2 datasets
ChIP HEK293 ENCFF184XEW 94 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 121 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 140 bp overlap
ZNF629 2 datasets
ChIP HEK293 ENCFF096ELQ 130 bp overlap
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 138 bp overlap
ZSCAN22 1 dataset
ChIP HEK293 GSE76494.ZSCAN22.HEK293 221 bp overlap