chr3 : 14,121,816 14,122,532
716 bp 97 TFs 5 linked genes
This 716 bp open chromatin element is linked to 5 target genes and is bound by 97 transcription factors.
Linked Genes
5 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
CHCHD4 2.3 kb Proximal Proximity
TMEM43 2.5 kb Proximal Proximity
XPC 56.5 kb Distal Multiome
LSM3 56.7 kb Distal Multiome
SLC6A6 280.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:14,116,816 – 14,127,532
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
97 transcription factors
Source
Cell type
AR 1 dataset
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 242 bp overlap
ARNT2 1 dataset
Motif DE_12h DE_12h-ARNT2_MA1464.2 8 bp overlap
Arnt 1 dataset
Motif DE_12h DE_12h-Arnt_MA0004.1 6 bp overlap
BCL3 1 dataset
ChIP GM12878 ENCSR000BNQ.BCL3.GM12878 144 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 220 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 229 bp overlap
BRD4 8 datasets
ChIP MM1-S GSE43743.BRD4.MM1-S 123 bp overlap
ChIP MM1-S_DMSO GSE42161.BRD4.MM1-S_DMSO 329 bp overlap
ChIP MM1-S_JQ1_150NM GSE49224.BRD4.MM1-S_JQ1_150NM 183 bp overlap
ChIP MM1-S_JQ1_50NM GSE42355.BRD4.MM1-S_JQ1_50NM 129 bp overlap
ChIP MM1-S_JQ1_50NM GSE42355.BRD4.MM1-S_JQ1_50NM 318 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 201 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 347 bp overlap
ChIP MM1-S_JQ1_5UM GSE42355.BRD4.MM1-S_JQ1_5UM 152 bp overlap
CDK8 1 dataset
ChIP MM1-S GSE43743.CDK8.MM1-S 194 bp overlap
CDK9 1 dataset
ChIP MM1-S_DMSO GSE42161.CDK9.MM1-S_DMSO 319 bp overlap
CLOCK 1 dataset
Motif DE_12h DE_12h-CLOCK_MA0819.3 7 bp overlap
CTCF 4 datasets
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
Motif ES_0h ES_0h-CTCF_MA1930.2 33 bp overlap
ChIP H9 ENCFF152GTF 334 bp overlap
ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 276 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 350 bp overlap
E2F6 2 datasets
Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap
Motif ES_0h ES_0h-E2F6_MA0471.3 8 bp overlap
E4F1 1 dataset
ChIP K-562 ENCSR731LHZ.E4F1.K-562 53 bp overlap
ESR1 1 dataset
ChIP T-47D_R5020 GSE68355.ESR1.T-47D_R5020 191 bp overlap
ESRRA 3 datasets
ChIP SK-BR-3 GSE81651.ESRRA.SK-BR-3 233 bp overlap
ChIP SK-BR-3_EGF GSE81651.ESRRA.SK-BR-3_EGF 122 bp overlap
ChIP SK-BR-3_HRG GSE81651.ESRRA.SK-BR-3_HRG 160 bp overlap
EWSR1-FLI1 2 datasets
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif ES_0h ES_0h-EWSR1-FLI1_MA0149.1 18 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 259 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 371 bp overlap
GATA1::TAL1 2 datasets
Motif DE_12h DE_12h-GATA1TAL1_MA0140.3 17 bp overlap
Motif ES_0h ES_0h-GATA1TAL1_MA0140.3 17 bp overlap
GRHL2 1 dataset
ChIP HBE GSE46194.GRHL2.HBE 96 bp overlap
HAND2 2 datasets
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
Motif ES_0h ES_0h-HAND2_MA1638.2 6 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR563YDA.HDGF.K-562 268 bp overlap
HES6 1 dataset
Motif DE_12h DE_12h-HES6_MA1493.1 10 bp overlap
HEY2 1 dataset
Motif DE_12h DE_12h-HEY2_MA0649.2 9 bp overlap
HNF4A 2 datasets
Motif DE_12h DE_12h-HNF4A_MA1494.2 14 bp overlap
Motif ES_0h ES_0h-HNF4A_MA1494.2 14 bp overlap
HOXB13 1 dataset
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 155 bp overlap
HSF2 2 datasets
Motif DE_12h DE_12h-HSF2_MA0770.1 13 bp overlap
Motif ES_0h ES_0h-HSF2_MA0770.1 13 bp overlap
Hand1::Tcf3 2 datasets
Motif DE_12h DE_12h-Hand1Tcf3_MA0092.2 9 bp overlap
Motif ES_0h ES_0h-Hand1Tcf3_MA0092.2 9 bp overlap
IKZF2 1 dataset
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
KAT7 2 datasets
ChIP WTC11 ENCFF581TPB 511 bp overlap
ChIP WTC11 ENCFF581TPB 339 bp overlap
MAX 1 dataset
Motif DE_12h DE_12h-MAX_MA0058.4 6 bp overlap
MAZ 2 datasets
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
Motif ES_0h ES_0h-MAZ_MA1522.2 8 bp overlap
MED1 8 datasets
ChIP MM1-S_BIORU GSE45984.MED1.MM1-S_BIORU 207 bp overlap
ChIP MM1-S_DMSO GSE36354.MED1.MM1-S_DMSO 179 bp overlap
ChIP MM1-S_JQ1 GSE42161.MED1.MM1-S_JQ1 82 bp overlap
ChIP MM1-S_JQ1_5000NM GSE49224.MED1.MM1-S_JQ1_5000NM 57 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 122 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 268 bp overlap
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 280 bp overlap
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 541 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MGA 1 dataset
Motif DE_12h DE_12h-MGA_MA0801.1 8 bp overlap
MLXIPL 1 dataset
Motif DE_12h DE_12h-MLXIPL_MA0664.2 8 bp overlap
MNT 1 dataset
Motif DE_12h DE_12h-MNT_MA0825.2 6 bp overlap
MYC 1 dataset
ChIP MM1-S_DMSO GSE36354.MYC.MM1-S_DMSO 334 bp overlap
Mlxip 1 dataset
Motif DE_12h DE_12h-Mlxip_MA0622.2 6 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 278 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 716 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 557 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 496 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 58 bp overlap
Npas2 1 dataset
Motif DE_12h DE_12h-Npas2_MA0626.2 8 bp overlap
PAX1 2 datasets
Motif DE_12h DE_12h-PAX1_MA0779.2 16 bp overlap
Motif ES_0h ES_0h-PAX1_MA0779.2 16 bp overlap
PAX2 2 datasets
Motif DE_12h DE_12h-PAX2_MA0067.3 16 bp overlap
Motif ES_0h ES_0h-PAX2_MA0067.3 16 bp overlap
PAX8 2 datasets
Motif DE_12h DE_12h-PAX8_MA2094.1 16 bp overlap
Motif ES_0h ES_0h-PAX8_MA2094.1 16 bp overlap
PAX9 2 datasets
Motif DE_12h DE_12h-PAX9_MA0781.2 16 bp overlap
Motif ES_0h ES_0h-PAX9_MA0781.2 16 bp overlap
PGR 2 datasets
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 405 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 380 bp overlap
PLAG1 1 dataset
Motif DE_12h DE_12h-PLAG1_MA0163.1 14 bp overlap
POLR2A 1 dataset
ChIP prostate gland ENCFF881OMH 193 bp overlap
POU5F1 3 datasets
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 298 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 329 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 563 bp overlap
PPARD 2 datasets
Motif DE_12h DE_12h-PPARD_MA1550.2 14 bp overlap
Motif ES_0h ES_0h-PPARD_MA1550.2 14 bp overlap
PRDM9 2 datasets
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
Prdm15 2 datasets
Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap
Motif ES_0h ES_0h-Prdm15_MA1616.2 11 bp overlap
RELB 2 datasets
Motif DE_12h DE_12h-RELB_MA1117.2 7 bp overlap
Motif ES_0h ES_0h-RELB_MA1117.2 7 bp overlap
RXRB 2 datasets
Motif DE_12h DE_12h-RXRB_MA0855.1 14 bp overlap
Motif ES_0h ES_0h-RXRB_MA0855.1 14 bp overlap
Rxra 2 datasets
Motif DE_12h DE_12h-Rxra_MA0512.2 14 bp overlap
Motif ES_0h ES_0h-Rxra_MA0512.2 14 bp overlap
SMAD2 1 dataset
ChIP hESC GSE29422.SMAD2.hESC 120 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 273 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 621 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 442 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 620 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 560 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE21614.SMAD3.BG03 142 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 259 bp overlap
SNAI2 1 dataset
ChIP keratinocyte_LacZ GSE55421.SNAI2.keratinocyte_LacZ 125 bp overlap
SOX10 4 datasets
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX12 1 dataset
Motif DE_12h DE_12h-SOX12_MA1561.2 10 bp overlap
SOX2 2 datasets
ChIP HCC95 GSE137459.SOX2.HCC95 120 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 274 bp overlap
SOX21 1 dataset
Motif ES_0h ES_0h-SOX21_MA0866.1 15 bp overlap
SOX4 4 datasets
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
Motif ES_0h ES_0h-SOX4_MA0867.3 8 bp overlap
Motif ES_0h ES_0h-SOX4_MA0867.3 8 bp overlap
SP1 2 datasets
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
Motif ES_0h ES_0h-SP1_MA0079.5 9 bp overlap
SP2 2 datasets
Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap
Motif ES_0h ES_0h-SP2_MA0516.3 9 bp overlap
SP5 4 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SUPT5H 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 157 bp overlap
Sox1 1 dataset
Motif ES_0h ES_0h-Sox1_MA0870.1 15 bp overlap
Sox11 2 datasets
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
Motif ES_0h ES_0h-Sox11_MA0869.3 8 bp overlap
Sox6 2 datasets
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap
TBX4 1 dataset
Motif DE_12h DE_12h-TBX4_MA0806.1 8 bp overlap
TCF4 2 datasets
ChIP CAL-1 GSE76147.TCF4.CAL-1 89 bp overlap
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 91 bp overlap
TEAD1 3 datasets
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
Motif ES_0h ES_0h-TEAD1_MA0090.4 9 bp overlap
ChIP WTC11 ENCFF502QUV 405 bp overlap
TEAD2 2 datasets
Motif DE_12h DE_12h-TEAD2_MA1121.2 7 bp overlap
Motif ES_0h ES_0h-TEAD2_MA1121.2 7 bp overlap
TEAD3 2 datasets
Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap
Motif ES_0h ES_0h-TEAD3_MA0808.1 8 bp overlap
TEAD4 2 datasets
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
Motif ES_0h ES_0h-TEAD4_MA0809.3 8 bp overlap
TFAP2A 2 datasets
Motif DE_12h DE_12h-TFAP2A_MA0872.1 13 bp overlap
Motif ES_0h ES_0h-TFAP2A_MA0872.1 13 bp overlap
TFAP2B 2 datasets
Motif DE_12h DE_12h-TFAP2B_MA0813.1 13 bp overlap
Motif ES_0h ES_0h-TFAP2B_MA0813.1 13 bp overlap
TFAP2C 4 datasets
Motif DE_12h DE_12h-TFAP2C_MA0815.1 13 bp overlap
Motif ES_0h ES_0h-TFAP2C_MA0815.1 13 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 642 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 597 bp overlap
THAP1 1 dataset
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
TP63 1 dataset
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 77 bp overlap
ZBTB26 1 dataset
Motif DE_12h DE_12h-ZBTB26_MA1579.2 8 bp overlap
ZFP14 2 datasets
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
Motif ES_0h ES_0h-ZFP14_MA1972.1 15 bp overlap
ZNF148 2 datasets
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap
ZNF324 4 datasets
Motif DE_12h DE_12h-ZNF324_MA1977.2 14 bp overlap
Motif DE_12h DE_12h-ZNF324_MA1977.2 14 bp overlap
Motif ES_0h ES_0h-ZNF324_MA1977.2 14 bp overlap
Motif ES_0h ES_0h-ZNF324_MA1977.2 14 bp overlap
ZNF398 1 dataset
ChIP BG01V GSE133630.ZNF398.BG01V 193 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 269 bp overlap
ZNF512 1 dataset
ChIP K562 ENCFF455WDH 215 bp overlap
ZNF675 2 datasets
Motif DE_12h DE_12h-ZNF675_MA1714.2 19 bp overlap
Motif DE_12h DE_12h-ZNF675_MA1714.2 19 bp overlap
ZNF680 1 dataset
Motif ES_0h ES_0h-ZNF680_MA1729.2 11 bp overlap
ZNF701 2 datasets
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
Motif ES_0h ES_0h-ZNF701_MA1987.2 17 bp overlap