chr2 : 233,139,260 233,139,740
480 bp 98 TFs 3 linked genes
This 480 bp open chromatin element is linked to ATG16L1, DGKD, and SNORC and is bound by 98 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
ATG16L1 112.3 kb Distal Multiome
DGKD 215.1 kb Distal Multiome
SNORC 262.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:233,134,260 – 233,144,740
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
98 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 271 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 423 bp overlap
BCOR 6 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 145 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 166 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 267 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 152 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 168 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 165 bp overlap
BMPR1A 1 dataset
ChIP HUVEC-C GSE60156.BMPR1A.HUVEC-C 66 bp overlap
BORCS8,MEF2B 1 dataset
ChIP HepG2 ENCFF255VGS 94 bp overlap
BRD2 2 datasets
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 155 bp overlap
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 117 bp overlap
BRD4 3 datasets
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 292 bp overlap
ChIP hESC GSE33281.BRD4.hESC 84 bp overlap
ChIP keratinocyte GSE140992.BRD4.keratinocyte 480 bp overlap
CBFB 1 dataset
ChIP Hep-G2 ENCSR479RZV.CBFB.Hep-G2 76 bp overlap
CEBPB 1 dataset
ChIP H1 ENCFF871PTR 180 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 210 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 225 bp overlap
CREBBP 1 dataset
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 207 bp overlap
CTCF 4 datasets
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 73 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 191 bp overlap
ChIP hiPSC_IIIB12 GSE106870.CTCF.hiPSC_IIIB12 95 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 87 bp overlap
EP300 1 dataset
ChIP HCT-116_Nutlin3a GSE125927.EP300.HCT-116_Nutlin3a 164 bp overlap
ESR1 1 dataset
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 71 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 345 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 391 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 202 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 363 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 278 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-2 193 bp overlap
GRHL2 1 dataset
ChIP HBE GSE46194.GRHL2.HBE 143 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 238 bp overlap
HIC2 1 dataset
ChIP HepG2 ENCFF927POV 234 bp overlap
HNF4A 3 datasets
ChIP GP5D GSE51234.HNF4A.GP5D 331 bp overlap
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 157 bp overlap
ChIP Hep-G2 ERP000209.HNF4A.Hep-G2 144 bp overlap
HNF4G 1 dataset
ChIP HepG2 ENCFF323ATZ 149 bp overlap
HNRNPL 3 datasets
ChIP Hep-G2 GSE120104.HNRNPL.Hep-G2 175 bp overlap
ChIP Hep-G2 ENCSR315JJE.HNRNPL.Hep-G2 175 bp overlap
ChIP HepG2 ENCFF684GAM 293 bp overlap
JUN 4 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 245 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 325 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 319 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUN.MCF10A-Er-Src_EtOH 234 bp overlap
KDM1A 1 dataset
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 480 bp overlap
KLF6 1 dataset
ChIP Hep-G2 ENCSR757EKM.KLF6.Hep-G2 201 bp overlap
MAX 1 dataset
ChIP HepG2 ENCFF507HCX 301 bp overlap
MED1 1 dataset
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 55 bp overlap
MTA1 2 datasets
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 131 bp overlap
ChIP HepG2 ENCFF038CCB 217 bp overlap
MYC 2 datasets
ChIP MCF-10A ENCSR000DOS.MYC.MCF-10A 153 bp overlap
ChIP P493-6 GSE77061.MYC.P493-6 62 bp overlap
NANOG 9 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 166 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 480 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 302 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 277 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 381 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 382 bp overlap
ChIP hESC GSE20650.NANOG.hESC 294 bp overlap
ChIP hESC GSE18292.NANOG.hESC 156 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 185 bp overlap
POLR2A 2 datasets
ChIP H1 ENCFF566JSR 365 bp overlap
ChIP H1 ENCFF566JSR 277 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 385 bp overlap
POU5F1 13 datasets
ChIP BG03 GSE21614.POU5F1.BG03 169 bp overlap
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 169 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 437 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 480 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 304 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 441 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 113 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 231 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 372 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 389 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 308 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 146 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 312 bp overlap
RAD21 4 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 163 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 293 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 343 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 268 bp overlap
SALL1 1 dataset
ChIP HepG2 ENCFF426MCK 206 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 447 bp overlap
SIN3A 1 dataset
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 162 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 96 bp overlap
SMAD2 3 datasets
ChIP hESC GSE29422.SMAD2.hESC 174 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 311 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 183 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 319 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 369 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 316 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 305 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 252 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 353 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 254 bp overlap
SMAD3 5 datasets
ChIP BG03 GSE21614.SMAD3.BG03 264 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 161 bp overlap
ChIP H69_4Veh GSE145250.SMAD3.H69_4Veh 58 bp overlap
ChIP Hep-G2 ENCSR005GZH.SMAD3.Hep-G2 137 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 199 bp overlap
SMAD4 1 dataset
ChIP hESC GSE29422.SMAD4.hESC 156 bp overlap
SMARCA4 4 datasets
ChIP NSC GSE125033.SMARCA4.NSC 206 bp overlap
ChIP WA09 GSE105028.SMARCA4.WA09 276 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 378 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 360 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 310 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 400 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 479 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 344 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 480 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte_diff_d3 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d3 145 bp overlap
SOX13 1 dataset
ChIP HepG2 ENCFF231PAK 341 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 321 bp overlap
SOX6 3 datasets
ChIP Hep-G2 ENCSR766TSU.SOX6.Hep-G2 202 bp overlap
ChIP HepG2 ENCFF767OCK 360 bp overlap
ChIP HepG2 ENCFF767OCK 376 bp overlap
SP1 3 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP Hep-G2 ENCSR460YAM.SP1.Hep-G2 98 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 285 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 218 bp overlap
STAT3 3 datasets
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 122 bp overlap
ChIP MCF-10A ENCSR000DOZ.STAT3.MCF-10A 93 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 136 bp overlap
TAF1 4 datasets
ChIP H1 ENCFF478SZO 404 bp overlap
ChIP H1 ENCFF478SZO 230 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 177 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 87 bp overlap
TBP 4 datasets
ChIP hESC GSE122298.TBP.hESC 140 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 120 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 120 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 154 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 152 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 320 bp overlap
TCF7L2 1 dataset
ChIP hepatocellular-carcinoma-cell_420 GSE138781.TCF7L2.hepatocellular-carcinoma-cell_420 117 bp overlap
TP53 45 datasets
ChIP BC-3_NUT ERP014035.TP53.BC-3_NUT 123 bp overlap
ChIP GM00011 GSE55727.TP53.GM00011 313 bp overlap
ChIP GM06170 GSE55727.TP53.GM06170 233 bp overlap
ChIP H9_IFI16 GSE142050.TP53.H9_IFI16 480 bp overlap
ChIP H9_ectoderm_IFI16 GSE142050.TP53.H9_ectoderm_IFI16 407 bp overlap
ChIP H9_mesoderm_IFI16 GSE142050.TP53.H9_mesoderm_IFI16 253 bp overlap
ChIP HCT-116_5FU GSE58506.TP53.HCT-116_5FU 368 bp overlap
ChIP HCT-116_5FU GSE125927.TP53.HCT-116_5FU 263 bp overlap
ChIP HCT-116_Negative-ctrl GSE113338.TP53.HCT-116_Negative-ctrl 183 bp overlap
ChIP HCT-116_Nutlin3a GSE125927.TP53.HCT-116_Nutlin3a 445 bp overlap
ChIP HCT-116_Nutlin3a-SC GSE125927.TP53.HCT-116_Nutlin3a-SC 397 bp overlap
ChIP HCT-116_nutlin GSE86164.TP53.HCT-116_nutlin 397 bp overlap
ChIP HCT-116_si-iASSP GSE113338.TP53.HCT-116_si-iASSP 368 bp overlap
ChIP HCT-116_siGLIS2-1-5FU GSE125927.TP53.HCT-116_siGLIS2-1-5FU 318 bp overlap
ChIP HepG2 ENCFF687JDU 232 bp overlap
ChIP IMR-90 GSE115940.TP53.IMR-90 184 bp overlap
ChIP IMR-90_NUT3A GSE58740.TP53.IMR-90_NUT3A 432 bp overlap
ChIP K-562_Daunorubicin GSE131484.TP53.K-562_Daunorubicin 208 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP53.MCF-10A_Nutlin3A 462 bp overlap
ChIP MCF-7_1h_IR_10Gy GSE100099.TP53.MCF-7_1h_IR_10Gy 245 bp overlap
ChIP MCF-7_2-5h_IR_10Gy GSE100099.TP53.MCF-7_2-5h_IR_10Gy 243 bp overlap
ChIP MCF-7_4h_IR_10Gy GSE100099.TP53.MCF-7_4h_IR_10Gy 444 bp overlap
ChIP MCF-7_7-5h_IR_10Gy GSE100099.TP53.MCF-7_7-5h_IR_10Gy 376 bp overlap
ChIP MCF-7_7-5h_IR_10Gy_Nutlin GSE100099.TP53.MCF-7_7-5h_IR_10Gy_Nutlin 411 bp overlap
ChIP MCF-7_NCS-treated GSE101737.TP53.MCF-7_NCS-treated 319 bp overlap
ChIP MCF-7_nutlin GSE86164.TP53.MCF-7_nutlin 480 bp overlap
ChIP SJSA-1 GSE86164.TP53.SJSA-1 175 bp overlap
ChIP SJSA-1_nutlin GSE86164.TP53.SJSA-1_nutlin 375 bp overlap
ChIP SaOS-2 GSE15780.TP53.SaOS-2 392 bp overlap
ChIP U2OS_DMSO GSE46641.TP53.U2OS_DMSO 458 bp overlap
ChIP U2OS_DXR GSE46641.TP53.U2OS_DXR 298 bp overlap
ChIP U2OS_ETO GSE21939.TP53.U2OS_ETO 156 bp overlap
ChIP U2OS_NUT GSE46641.TP53.U2OS_NUT 455 bp overlap
ChIP U2OS_UV_16H ERP004176.TP53.U2OS_UV_16H 120 bp overlap
ChIP U2OS_UV_8H ERP004176.TP53.U2OS_UV_8H 120 bp overlap
ChIP UO-31_2h_4GY GSE100292.TP53.UO-31_2h_4GY 89 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 465 bp overlap
ChIP keratinocyte GSE56674.TP53.keratinocyte 211 bp overlap
ChIP keratinocyte_ADRIA GSE56674.TP53.keratinocyte_ADRIA 243 bp overlap
ChIP keratinocyte_CISP GSE56674.TP53.keratinocyte_CISP 461 bp overlap
ChIP lymphocyte_104_Nutlin GSE110368.TP53.lymphocyte_104_Nutlin 164 bp overlap
ChIP lymphocyte_116_DXR GSE110368.TP53.lymphocyte_116_DXR 196 bp overlap
ChIP lymphocyte_116_Nutlin GSE110368.TP53.lymphocyte_116_Nutlin 459 bp overlap
ChIP lymphocyte_45_DXR GSE110368.TP53.lymphocyte_45_DXR 125 bp overlap
ChIP lymphocyte_90_Nutlin GSE110368.TP53.lymphocyte_90_Nutlin 355 bp overlap
TP63 21 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 456 bp overlap
ChIP EP156T GSE43111.TP63.EP156T 136 bp overlap
ChIP HCC95 GSE46837.TP63.HCC95 149 bp overlap
ChIP HaCaT_LacZ GSE60814.TP63.HaCaT_LacZ 173 bp overlap
ChIP HaCaT_LacZ_TGFB GSE60814.TP63.HaCaT_LacZ_TGFB 279 bp overlap
ChIP HaCaT_caRAS_TGFB GSE60814.TP63.HaCaT_caRAS_TGFB 292 bp overlap
ChIP HaCaT_dnRAS_TGFB GSE60814.TP63.HaCaT_dnRAS_TGFB 240 bp overlap
ChIP MCF-10A_DCIS GSE72009.TP63.MCF-10A_DCIS 181 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 220 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 465 bp overlap
ChIP TT GSE46837.TP63.TT 149 bp overlap
ChIP keratinocyte GSE56674.TP63.keratinocyte 188 bp overlap
ChIP keratinocyte GSE33571.TP63.keratinocyte 170 bp overlap
ChIP keratinocyte_CISP GSE56674.TP63.keratinocyte_CISP 212 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 251 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 242 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 211 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 224 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 145 bp overlap
ChIP keratinocyte_epidermal GSE67382.TP63.keratinocyte_epidermal 221 bp overlap
ChIP keratinocyte_epidermal_KDPAF GSE67382.TP63.keratinocyte_epidermal_KDPAF 212 bp overlap
TP73_TA 1 dataset
ChIP SaOS-2 GSE15780.TP73_TA.SaOS-2 191 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 276 bp overlap
ZBTB2 1 dataset
ChIP GM12878 GSE97661.ZBTB2.GM12878 94 bp overlap
ZBTB38 2 datasets
ChIP HepG2 ENCFF875UQX 368 bp overlap
ChIP HepG2 ENCFF875UQX 314 bp overlap
ZFX 1 dataset
ChIP HepG2 ENCFF016NZF 401 bp overlap
ZIM3 1 dataset
ChIP HEK293T GSE78099.ZIM3.HEK293T 70 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 418 bp overlap
ZNF317 1 dataset
ChIP HepG2 ENCFF018ISP 306 bp overlap
ZNF430 1 dataset
ChIP HepG2 ENCFF967HQR 63 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 245 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 89 bp overlap
ZNF646 1 dataset
ChIP HepG2 ENCFF141MBP 365 bp overlap
ZNF687 2 datasets
ChIP HepG2 ENCFF653WIX 169 bp overlap
ChIP HepG2 ENCFF653WIX 169 bp overlap
ZNF7 1 dataset
ChIP HepG2 ENCFF983XQI 251 bp overlap
ZNF710 2 datasets
ChIP HepG2 ENCFF170JWO 480 bp overlap
ChIP HepG2 ENCFF170JWO 292 bp overlap
ZNF865 1 dataset
ChIP HepG2 ENCFF472KAQ 437 bp overlap
ZSCAN22 1 dataset
ChIP HepG2 ENCFF246MVE 207 bp overlap