chr1 : 39,268,962 39,269,157
195 bp 114 TFs 0 linked genes
This 195 bp open chromatin element has no linked target genes and is bound by 114 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:39,263,962 – 39,274,157
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
114 transcription factors
Source
Cell type
AR 1 dataset
ChIP myofibroblast GSE90772.AR.myofibroblast 96 bp overlap
ARID2 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 195 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 195 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 134 bp overlap
ChIP H1 ENCFF399KAM 195 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 195 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 122 bp overlap
ATF3 3 datasets
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 154 bp overlap
ChIP K-562 ENCSR028UIU.ATF3.K-562 195 bp overlap
ChIP K562 ENCFF604FPV 157 bp overlap
Atf3 1 dataset
Motif DE_12h DE_12h-Atf3_MA1988.2 7 bp overlap
BACH1 1 dataset
Motif DE_12h DE_12h-BACH1_MA1633.2 9 bp overlap
BACH2 1 dataset
Motif DE_12h DE_12h-BACH2_MA1101.3 11 bp overlap
BATF 1 dataset
Motif DE_12h DE_12h-BATF_MA1634.2 7 bp overlap
BATF3 1 dataset
Motif DE_12h DE_12h-BATF3_MA0835.3 7 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 182 bp overlap
BNC2 1 dataset
Motif DE_12h DE_12h-BNC2_MA1928.2 7 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 195 bp overlap
BRD3 2 datasets
ChIP HEK293T GSE39579.BRD3.HEK293T 111 bp overlap
ChIP MV4-11_DMSO GSE120715.BRD3.MV4-11_DMSO 97 bp overlap
BRD4 3 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 189 bp overlap
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.BRD4.Hs-352-Sk_PAX3-FOXO1-vector 180 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 150 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 90 bp overlap
CREB1 4 datasets
ChIP GM23338 ENCFF432ZEW 195 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 195 bp overlap
ChIP H1 ENCFF955PMP 119 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 173 bp overlap
CTCF 9 datasets
ChIP IMR-90_Ctrl GSE125639.CTCF.IMR-90_Ctrl 74 bp overlap
ChIP IMR-90_siRNA GSE125639.CTCF.IMR-90_siRNA 178 bp overlap
ChIP colon_transverse ENCSR833FWC.CTCF.colon_transverse 184 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF257LSY 195 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF257LSY 82 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 100 bp overlap
ChIP gastroesophageal-sphincter ENCSR661XNQ.CTCF.gastroesophageal-sphincter 87 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 93 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 51 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 149 bp overlap
DPF2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-K785R 177 bp overlap
EBF1 1 dataset
Motif DE_12h DE_12h-EBF1_MA0154.5 11 bp overlap
EED 1 dataset
ChIP GM12878 ENCFF266FYW 122 bp overlap
EGR1 2 datasets
ChIP H1 ENCFF451BLH 157 bp overlap
ChIP fibroblast_DOX-24h GSE134924.EGR1.fibroblast_DOX-24h 181 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 195 bp overlap
EZH2 2 datasets
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 195 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 165 bp overlap
Ebf4 1 dataset
Motif DE_12h DE_12h-Ebf4_MA2122.1 11 bp overlap
FOS 8 datasets
Motif DE_12h DE_12h-FOS_MA0476.2 8 bp overlap
ChIP Hep-G2 ENCSR177HDZ.FOS.Hep-G2 112 bp overlap
ChIP IMR-90 ENCFF179EDA 195 bp overlap
ChIP IMR-90 ENCSR124AIG.FOS.IMR-90 194 bp overlap
ChIP MCF-7 ENCFF282FWZ 195 bp overlap
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 195 bp overlap
ChIP myometrium_PT886 GSE128230.FOS.myometrium_PT886 97 bp overlap
ChIP myometrium_PT967 GSE128230.FOS.myometrium_PT967 76 bp overlap
FOSL1 1 dataset
Motif DE_12h DE_12h-FOSL1_MA0477.3 9 bp overlap
FOSL2 3 datasets
ChIP A-549 ENCSR448TVS.FOSL2.A-549 195 bp overlap
ChIP A549 ENCFF195CES 195 bp overlap
Motif DE_12h DE_12h-FOSL2_MA0478.2 10 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 108 bp overlap
GATA4 2 datasets
ChIP foregut GSE117136.GATA4.foregut 195 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 195 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-2 195 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 195 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 195 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 195 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 195 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 195 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 195 bp overlap
GLI3 1 dataset
Motif DE_12h DE_12h-GLI3_MA1491.3 15 bp overlap
GLIS1 3 datasets
Motif DE_12h DE_12h-GLIS1_MA0735.2 15 bp overlap
ChIP HEK293 ENCFF299RSE 195 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 195 bp overlap
Gli1 1 dataset
Motif DE_12h DE_12h-Gli1_MA1990.2 10 bp overlap
Gli2 1 dataset
Motif DE_12h DE_12h-Gli2_MA0734.4 9 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 159 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 195 bp overlap
Hand1 2 datasets
Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap
Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 195 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 195 bp overlap
JDP2 1 dataset
Motif DE_12h DE_12h-JDP2_MA0655.1 9 bp overlap
JUN 13 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 195 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 195 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 195 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 195 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 195 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 195 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 195 bp overlap
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 160 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 195 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 195 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 195 bp overlap
ChIP MCF-7_DMSO GSE157385.JUN.MCF-7_DMSO 149 bp overlap
ChIP endothelial cell of umbilical vein ENCFF791BMV 195 bp overlap
JUNB 4 datasets
ChIP CD4 GSE116695.JUNB.CD4 195 bp overlap
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 190 bp overlap
Motif DE_12h DE_12h-JUNB_MA0490.3 9 bp overlap
ChIP Karpas-299 GSE151413.JUNB.Karpas-299 195 bp overlap
JUND 9 datasets
Motif DE_12h DE_12h-JUND_MA0491.3 9 bp overlap
ChIP H1 ENCFF010YXS 195 bp overlap
ChIP H1 ENCFF468JZD 195 bp overlap
ChIP HepG2 ENCFF869OPW 195 bp overlap
ChIP K-562 ENCSR000EGN.JUND.K-562 134 bp overlap
ChIP SK-N-SH ENCFF971JKN 195 bp overlap
ChIP SK-N-SH ENCSR000EIB.JUND.SK-N-SH 140 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 195 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 195 bp overlap
Jun 1 dataset
Motif DE_12h DE_12h-Jun_MA0489.3 8 bp overlap
KLF13 1 dataset
ChIP HEK293 ENCSR946ZLI.KLF13.HEK293 163 bp overlap
MAFK 1 dataset
Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap
MAZ 2 datasets
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 170 bp overlap
MYB 1 dataset
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 184 bp overlap
MYOD1 2 datasets
ChIP RD GSE137168.MYOD1.RD 195 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 164 bp overlap
MYOG 1 dataset
ChIP RH4 GSE83726.MYOG.RH4 136 bp overlap
Mafg 1 dataset
Motif DE_12h DE_12h-Mafg_MA0659.4 12 bp overlap
Msgn1 1 dataset
Motif DE_12h DE_12h-Msgn1_MA1524.3 10 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 195 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 195 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 176 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 195 bp overlap
NFE2 1 dataset
Motif DE_12h DE_12h-NFE2_MA0841.2 10 bp overlap
NR3C1 2 datasets
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 195 bp overlap
ChIP BEAS-2B_shNR3C1_TNF_IA1 GSE125623.NR3C1.BEAS-2B_shNR3C1_TNF_IA1 163 bp overlap
Nfe2l2 1 dataset
Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCFF016MNJ 126 bp overlap
PGR 1 dataset
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 195 bp overlap
POLR2A 3 datasets
ChIP H1 ENCFF566JSR 195 bp overlap
ChIP H1 ENCFF833NJP 195 bp overlap
ChIP neural cell ENCFF604SPB 195 bp overlap
RBAK 1 dataset
ChIP HEK293 ENCFF263SUK 195 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 127 bp overlap
RELA 10 datasets
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 195 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 107 bp overlap
ChIP HUVEC-C_TNF-30min GSE121890.RELA.HUVEC-C_TNF-30min 76 bp overlap
ChIP HUVEC-C_TNF-60min GSE121890.RELA.HUVEC-C_TNF-60min 195 bp overlap
ChIP HUVEC-C_TNF_30M GSE34500.RELA.HUVEC-C_TNF_30M 76 bp overlap
ChIP MCF-7_IL1b_45m GSE67295.RELA.MCF-7_IL1b_45m 50 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 172 bp overlap
ChIP aortic-endothelial-cell_IL1B_D25 GSE139377.RELA.aortic-endothelial-cell_IL1B_D25 188 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 195 bp overlap
ChIP mammary-epithelial-cell_IL1 GSE71069.RELA.mammary-epithelial-cell_IL1 152 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 137 bp overlap
ChIP neural cell ENCFF882LXX 195 bp overlap
RFX5 5 datasets
ChIP H1 ENCFF605EGG 195 bp overlap
ChIP IMR-90 ENCSR000EFD.RFX5.IMR-90 152 bp overlap
ChIP MCF-7 ENCFF983ILY 195 bp overlap
ChIP MCF-7 ENCSR924TVL.RFX5.MCF-7 195 bp overlap
ChIP WA01 ENCSR000ECF.RFX5.WA01 195 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 147 bp overlap
SIN3A 6 datasets
ChIP H1 ENCFF042ZSL 195 bp overlap
ChIP H1 ENCFF896IJG 195 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 190 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 168 bp overlap
ChIP hiPSC_IA12 GSE106870.SIN3A.hiPSC_IA12 195 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 192 bp overlap
SMAD2 2 datasets
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 195 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 195 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 195 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 154 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 195 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 195 bp overlap
SMARCA4 4 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 195 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 195 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 195 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 195 bp overlap
SMARCB1 3 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 195 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 174 bp overlap
ChIP proliferating-human-fibroblast_ASO_Ctrl GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_Ctrl 114 bp overlap
SMARCC1 5 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 176 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 195 bp overlap
ChIP DE_D1 S10-DE-d1-BAF155-exp1 195 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 195 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 195 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 112 bp overlap
SNAI2 1 dataset
ChIP keratinocyte_LacZ GSE55421.SNAI2.keratinocyte_LacZ 93 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 140 bp overlap
SP1 1 dataset
ChIP H1 ENCFF263FUH 195 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 195 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 195 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 80 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 195 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 195 bp overlap
TBP 3 datasets
ChIP H1 ENCFF859IIO 195 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 195 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 86 bp overlap
TEAD4 3 datasets
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
ChIP ESC S26-ESC-d0-TEAD4-exp1 195 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 195 bp overlap
Tfcp2l1 1 dataset
Motif DE_12h DE_12h-Tfcp2l1_MA0145.2 14 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 195 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 195 bp overlap
ZNF10 2 datasets
ChIP HEK293 ENCFF611ZJI 172 bp overlap
ChIP HEK293 ENCSR019WUS.ZNF10.HEK293 195 bp overlap
ZNF134 1 dataset
ChIP HEK293 GSE76494.ZNF134.HEK293 176 bp overlap
ZNF135 1 dataset
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF263 1 dataset
ChIP HEK293 ENCFF336CWQ 195 bp overlap
ZNF341 1 dataset
ChIP HEK293 GSE76494.ZNF341.HEK293 54 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 195 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 195 bp overlap
ZNF398 4 datasets
ChIP BG01V GSE133630.ZNF398.BG01V 160 bp overlap
ChIP H9 GSE133630.ZNF398.H9 195 bp overlap
ChIP HEK293 ENCFF184XEW 195 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 195 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap