chr1 : 34,846,880 34,847,412
532 bp 93 TFs 5 linked genes
This 532 bp open chromatin element is linked to 5 target genes and is bound by 93 transcription factors.
Linked Genes
5 genes
Link type
Gene Expression Dist. to TSS Distance Link type
SMIM12 12.6 kb Distal Multiome
GJA4 54.1 kb Distal Multiome+HiCAR
TMEM35B 138.2 kb Distal Multiome
ZMYM6 184.8 kb Distal Multiome
ZMYM1 232.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:34,841,880 – 34,852,412
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
93 transcription factors
Source
Cell type
ARID3A 1 dataset
ChIP HepG2 ENCFF341DES 495 bp overlap
ARID4A 2 datasets
ChIP Hep-G2 ENCSR386UBO.ARID4A.Hep-G2 187 bp overlap
ChIP HepG2 ENCFF142DIE 532 bp overlap
ARID5B 1 dataset
ChIP HepG2 ENCFF964FWK 400 bp overlap
BCL6 1 dataset
ChIP HepG2 ENCFF423EJH 190 bp overlap
BHLHE40 4 datasets
ChIP Hep-G2 ENCSR000EDT.BHLHE40.Hep-G2 290 bp overlap
ChIP Hep-G2 ENCSR000BID.BHLHE40.Hep-G2 201 bp overlap
ChIP HepG2 ENCFF272ULI 191 bp overlap
ChIP HepG2 ENCFF961RID 128 bp overlap
BRD3 1 dataset
ChIP K-562_DMSO-IFNG GSE138084.BRD3.K-562_DMSO-IFNG 173 bp overlap
BRD4 1 dataset
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD4.K-562_iBET-BD1-IFNG 107 bp overlap
CBFB 1 dataset
ChIP Hep-G2 ENCSR479RZV.CBFB.Hep-G2 171 bp overlap
CBX2 1 dataset
ChIP HEK293T GSE34774.CBX2.HEK293T 265 bp overlap
CCAR2 1 dataset
ChIP Hep-G2 ENCSR247XFV.CCAR2.Hep-G2 156 bp overlap
CTCF 1 dataset
ChIP HepG2 ENCFF757EKU 216 bp overlap
EP300 2 datasets
ChIP Hep-G2 ENCSR000BLW.EP300.Hep-G2 248 bp overlap
ChIP HepG2 ENCFF354ACD 325 bp overlap
EZH2 1 dataset
ChIP LNCaP GSE39459.EZH2.LNCaP 195 bp overlap
FOXA1 3 datasets
ChIP HepG2 ENCFF207NVJ 281 bp overlap
ChIP HepG2 ENCFF740VZW 285 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 457 bp overlap
FOXA2 5 datasets
ChIP DE DE-FOXA2-1 470 bp overlap
ChIP DE DE-FOXA2-2 493 bp overlap
ChIP HepG2 ENCFF533COJ 297 bp overlap
ChIP HepG2 ENCFF894AYY 381 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 384 bp overlap
FOXA3 1 dataset
ChIP HepG2 ENCFF005KGL 361 bp overlap
FOXK1 1 dataset
ChIP Hep-G2 ENCSR603BJQ.FOXK1.Hep-G2 140 bp overlap
FOXP1 2 datasets
ChIP Hep-G2 ENCSR369YUK.FOXP1.Hep-G2 353 bp overlap
ChIP HepG2 ENCFF823ERM 341 bp overlap
FOXP4 2 datasets
ChIP Hep-G2 ENCSR232LLP.FOXP4.Hep-G2 402 bp overlap
ChIP HepG2 ENCFF462ULY 429 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 402 bp overlap
ChIP DE DE-GATA4-2 532 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 359 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 532 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 394 bp overlap
ChIP DE DE-GATA6-2 532 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 328 bp overlap
ChIP foregut GSE117136.GATA6.foregut 304 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 296 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 377 bp overlap
GATAD2A 1 dataset
ChIP HepG2 ENCFF252XNH 196 bp overlap
HDAC2 2 datasets
ChIP Hep-G2 ENCSR000BMC.HDAC2.Hep-G2 224 bp overlap
ChIP HepG2 ENCFF990GUQ 445 bp overlap
HES1 1 dataset
ChIP Hep-G2 GSE97661.HES1.Hep-G2 263 bp overlap
HMG20A 1 dataset
ChIP HepG2 ENCFF599VWU 425 bp overlap
HMG20B 1 dataset
ChIP HepG2 ENCFF756WYV 341 bp overlap
HNF4A 2 datasets
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 341 bp overlap
ChIP HepG2 ENCFF146SSF 361 bp overlap
ISL2 1 dataset
ChIP Hep-G2 ENCSR492IHH.ISL2.Hep-G2 214 bp overlap
JUND 1 dataset
ChIP Hep-G2 ENCSR000BGK.JUND.Hep-G2 117 bp overlap
KDM1A 2 datasets
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 424 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 348 bp overlap
KMT2D 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 309 bp overlap
MAX 3 datasets
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 305 bp overlap
ChIP Hep-G2 ENCSR000BTM.MAX.Hep-G2 139 bp overlap
ChIP HepG2 ENCFF507HCX 532 bp overlap
MED1 3 datasets
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 305 bp overlap
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 163 bp overlap
ChIP Hep-G2 ENCSR959XNY.MED1.Hep-G2 179 bp overlap
MITF 2 datasets
ChIP 501-mel GSE137522.MITF.501-mel 204 bp overlap
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 258 bp overlap
MNX1 1 dataset
ChIP Hep-G2 ENCSR108MKR.MNX1.Hep-G2 289 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 280 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 224 bp overlap
NCOA2 1 dataset
ChIP HepG2 ENCFF853BJJ 432 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 152 bp overlap
NFIA 1 dataset
ChIP HepG2 ENCFF815HWK 184 bp overlap
NR2F1 1 dataset
ChIP HepG2 ENCFF953UJL 301 bp overlap
NR2F2 2 datasets
ChIP Hep-G2 ENCSR000BVM.NR2F2.Hep-G2 267 bp overlap
ChIP HepG2 ENCFF483TVJ 125 bp overlap
NR2F6 3 datasets
ChIP Hep-G2 ENCSR518WPL.NR2F6.Hep-G2 396 bp overlap
ChIP HepG2 ENCFF429VKC 160 bp overlap
ChIP HepG2 ENCFF514UJI 105 bp overlap
PATZ1 1 dataset
ChIP HepG2 ENCFF723PFC 238 bp overlap
PDX1 4 datasets
ChIP hESC GSE58685.PDX1.hESC 135 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 374 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 405 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 484 bp overlap
PHF21A 2 datasets
ChIP Hep-G2 ENCSR315VYZ.PHF21A.Hep-G2 246 bp overlap
ChIP HepG2 ENCFF525EUW 516 bp overlap
PITX1 1 dataset
ChIP HepG2 ENCFF468QTQ 471 bp overlap
PPARG 1 dataset
ChIP Hep-G2 ENCSR130VQL.PPARG.Hep-G2 219 bp overlap
RAD21 2 datasets
ChIP Hep-G2 ENCSR054FKH.RAD21.Hep-G2 111 bp overlap
ChIP HepG2 ENCFF360ZSW 159 bp overlap
RARA 1 dataset
ChIP HepG2 ENCFF582XUA 357 bp overlap
RBPJ 1 dataset
ChIP HepG2 ENCFF367CFI 507 bp overlap
REPIN1 1 dataset
ChIP HepG2 ENCFF598VSY 504 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 390 bp overlap
RXRA 1 dataset
ChIP Hep-G2 ENCSR000BHU.RXRA.Hep-G2 120 bp overlap
SALL1 1 dataset
ChIP HepG2 ENCFF426MCK 404 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 532 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 486 bp overlap
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 502 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 371 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 488 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 464 bp overlap
SMAD4 2 datasets
ChIP HepG2 ENCFF615GTE 150 bp overlap
ChIP endoderm GSE29422.SMAD4.endoderm 137 bp overlap
SOX13 3 datasets
ChIP Hep-G2 ENCSR445ACU.SOX13.Hep-G2 239 bp overlap
ChIP HepG2 ENCFF062VSQ 425 bp overlap
ChIP HepG2 ENCFF231PAK 341 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 398 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 485 bp overlap
SOX5 1 dataset
ChIP HepG2 ENCFF470KZD 271 bp overlap
SOX6 3 datasets
ChIP Hep-G2 ENCSR766TSU.SOX6.Hep-G2 456 bp overlap
ChIP HepG2 ENCFF767OCK 383 bp overlap
ChIP HepG2 ENCFF767OCK 150 bp overlap
SP5 1 dataset
ChIP Hep-G2 ENCSR019NPF.SP5.Hep-G2 180 bp overlap
TBX2 2 datasets
ChIP Hep-G2 ENCSR410FEH.TBX2.Hep-G2 195 bp overlap
ChIP HepG2 ENCFF811TLA 532 bp overlap
TCF7 2 datasets
ChIP Hep-G2 ENCSR444LIN.TCF7.Hep-G2 284 bp overlap
ChIP HepG2 ENCFF628OFQ 357 bp overlap
TCF7L2 2 datasets
ChIP Hep-G2 ENCSR346BOD.TCF7L2.Hep-G2 374 bp overlap
ChIP HepG2 ENCFF510OLG 438 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 298 bp overlap
TFAP4 3 datasets
ChIP Hep-G2 ENCSR103SZL.TFAP4.Hep-G2 265 bp overlap
ChIP HepG2 ENCFF030SRU 371 bp overlap
ChIP HepG2 ENCFF932XOY 397 bp overlap
TFDP2 1 dataset
ChIP Hep-G2 ENCSR069JKP.TFDP2.Hep-G2 157 bp overlap
TFE3 2 datasets
ChIP Hep-G2 ENCSR589SNT.TFE3.Hep-G2 277 bp overlap
ChIP HepG2 ENCFF268PFH 370 bp overlap
THRA 1 dataset
ChIP HepG2 ENCFF025KMX 385 bp overlap
USF1 3 datasets
ChIP Hep-G2 ENCSR000BGM.USF1.Hep-G2 297 bp overlap
ChIP HepG2 ENCFF201JKA 165 bp overlap
ChIP HepG2 ENCFF807KYJ 195 bp overlap
USF2 3 datasets
ChIP Hep-G2 GSE97661.USF2.Hep-G2 319 bp overlap
ChIP Hep-G2 ENCSR145QNL.USF2.Hep-G2 269 bp overlap
ChIP HepG2 ENCFF433IUE 454 bp overlap
ZMYM4 2 datasets
ChIP HepG2 ENCFF567SQY 481 bp overlap
ChIP HepG2 ENCFF567SQY 274 bp overlap
ZNF143 4 datasets
ChIP Hep-G2 ENCSR080UEM.ZNF143.Hep-G2 252 bp overlap
ChIP HepG2 ENCFF658YIR 230 bp overlap
ChIP MCF-7 GSE76454.ZNF143.MCF-7 101 bp overlap
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 107 bp overlap
ZNF219 1 dataset
ChIP HepG2 ENCFF266JIR 431 bp overlap
ZNF331 1 dataset
ChIP HepG2 ENCFF842SZN 334 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 412 bp overlap
ZNF891 2 datasets
ChIP Hep-G2 ENCSR020CLV.ZNF891.Hep-G2 196 bp overlap
ChIP HepG2 ENCFF491CCY 278 bp overlap