Predicted to enable protein dimerization activity and zinc ion binding activity. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for ZMYM1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = ZMYM1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of ZMYM1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr1:34,781,173–34,782,115 | 297.6 kb | Distal (>10kb) Multiome | 263 | |
| chr1:34,792,757–34,793,260 | 286.5 kb | Distal (>10kb) Multiome | 67 | |
| chr1:34,843,142–34,844,904 | 235.0 kb | Distal (>10kb) Multiome | 414 | |
| chr1:34,846,880–34,847,412 | 232.2 kb | Distal (>10kb) Multiome | 93 | |
| chr1:34,852,691–34,853,220 | 226.5 kb | Distal (>10kb) Multiome | 557 | |
| chr1:34,859,367–34,859,973 | 219.6 kb | Distal (>10kb) Multiome | 862 | |
| chr1:34,865,980–34,866,815 | 213.0 kb | Distal (>10kb) Multiome | 588 | |
| chr1:34,885,018–34,886,281 | 193.6 kb | Distal (>10kb) Multiome | 254 | |
| chr1:34,929,050–34,930,777 | 149.8 kb | Distal (>10kb) Multiome | 401 | |
| chr1:34,984,883–34,985,660 | 94.1 kb | Distal (>10kb) Multiome | 682 | |
| chr1:35,031,470–35,032,157 | 47.5 kb | Distal (>10kb) Multiome | 762 | |
| chr1:35,079,136–35,079,827 | 18 bp | At TSS Multiome | 764 | |
| chr1:35,191,872–35,193,675 | 112.7 kb | Distal (>10kb) Multiome | 986 | |
| chr1:35,268,326–35,269,324 | 189.4 kb | Distal (>10kb) Multiome | 761 |
Genomic view of the ZMYM1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.