chr20 : 5,969,591 5,969,872
281 bp 148 TFs 0 linked genes
This 281 bp open chromatin element has no linked target genes and is bound by 148 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:5,964,591 – 5,974,872
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
148 transcription factors
Source
Cell type
ALX3 1 dataset
Motif ES_0h ES_0h-ALX3_MA0634.2 6 bp overlap
ARGFX 1 dataset
Motif ES_0h ES_0h-ARGFX_MA1463.2 8 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 281 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 260 bp overlap
Alx1 1 dataset
Motif ES_0h ES_0h-Alx1_MA0854.2 8 bp overlap
Alx4 1 dataset
Motif ES_0h ES_0h-Alx4_MA0853.2 12 bp overlap
Arid3a 1 dataset
Motif ES_0h ES_0h-Arid3a_MA0151.1 6 bp overlap
Arx 1 dataset
Motif ES_0h ES_0h-Arx_MA0874.2 10 bp overlap
BCL11A 3 datasets
ChIP H1 ENCFF836SSR 177 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 195 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 135 bp overlap
BCOR 4 datasets
ChIP WA01 GSE104690.BCOR.WA01 281 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 275 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 180 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 281 bp overlap
BRD4 1 dataset
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 208 bp overlap
CHD7 2 datasets
ChIP WA01 ENCSR000AVA.CHD7.WA01 159 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 281 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCFF432ZEW 262 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 217 bp overlap
CTCF 2 datasets
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 237 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 215 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 85 bp overlap
DRGX 1 dataset
Motif ES_0h ES_0h-DRGX_MA1481.2 6 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 122 bp overlap
EGR1 2 datasets
ChIP H1 ENCFF451BLH 250 bp overlap
ChIP WA01 ENCSR000BJA.EGR1.WA01 178 bp overlap
EMX1 1 dataset
Motif ES_0h ES_0h-EMX1_MA0612.3 6 bp overlap
EMX2 1 dataset
Motif ES_0h ES_0h-EMX2_MA0886.2 6 bp overlap
EN1 1 dataset
Motif ES_0h ES_0h-EN1_MA0027.3 6 bp overlap
EN2 1 dataset
Motif ES_0h ES_0h-EN2_MA0642.3 7 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 261 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 201 bp overlap
ESX1 1 dataset
Motif ES_0h ES_0h-ESX1_MA0644.3 7 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 135 bp overlap
EVX1 1 dataset
Motif ES_0h ES_0h-EVX1_MA0887.2 6 bp overlap
EVX2 1 dataset
Motif ES_0h ES_0h-EVX2_MA0888.2 6 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 279 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 197 bp overlap
GBX1 1 dataset
Motif ES_0h ES_0h-GBX1_MA0889.2 7 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 281 bp overlap
GSX1 1 dataset
Motif ES_0h ES_0h-GSX1_MA0892.2 6 bp overlap
GSX2 1 dataset
Motif ES_0h ES_0h-GSX2_MA0893.3 7 bp overlap
Gli1 2 datasets
Motif DE_12h DE_12h-Gli1_MA1990.2 10 bp overlap
Motif ES_0h ES_0h-Gli1_MA1990.2 10 bp overlap
Gli2 2 datasets
Motif DE_12h DE_12h-Gli2_MA0734.4 9 bp overlap
Motif ES_0h ES_0h-Gli2_MA0734.4 9 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF939VKA 224 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 134 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 154 bp overlap
HDAC6 1 dataset
ChIP WA01 ENCSR000ATQ.HDAC6.WA01 129 bp overlap
HOXA1 1 dataset
Motif ES_0h ES_0h-HOXA1_MA1495.2 6 bp overlap
HOXA2 1 dataset
Motif ES_0h ES_0h-HOXA2_MA0900.3 6 bp overlap
HOXA3 1 dataset
Motif ES_0h ES_0h-HOXA3_MA2119.1 7 bp overlap
HOXB1 1 dataset
Motif ES_0h ES_0h-HOXB1_MA2093.1 7 bp overlap
HOXB2 1 dataset
Motif ES_0h ES_0h-HOXB2_MA0902.3 6 bp overlap
HOXB3 1 dataset
Motif ES_0h ES_0h-HOXB3_MA0903.2 6 bp overlap
HOXB5 1 dataset
Motif ES_0h ES_0h-HOXB5_MA0904.3 6 bp overlap
HOXC8 1 dataset
Motif ES_0h ES_0h-HOXC8_MA1505.2 6 bp overlap
HOXD3 1 dataset
Motif ES_0h ES_0h-HOXD3_MA0912.2 8 bp overlap
Hand1 1 dataset
Motif ES_0h ES_0h-Hand1_MA2123.1 9 bp overlap
ISX 1 dataset
Motif ES_0h ES_0h-ISX_MA0654.2 6 bp overlap
Irf1 1 dataset
Motif ES_0h ES_0h-Irf1_MA0050.4 11 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 218 bp overlap
JUN 5 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 281 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 251 bp overlap
ChIP H1 ENCFF621PNP 241 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 259 bp overlap
ChIP WA01 ENCSR000ECA.JUN.WA01 133 bp overlap
JUND 2 datasets
ChIP H1 ENCFF468JZD 231 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 193 bp overlap
KLF4 3 datasets
ChIP HAP1 GSE130417.KLF4.HAP1 201 bp overlap
ChIP WA09_heat-shock GSE105028.KLF4.WA09_heat-shock 223 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 236 bp overlap
LBX1 1 dataset
Motif ES_0h ES_0h-LBX1_MA0618.2 7 bp overlap
LHX5 1 dataset
Motif ES_0h ES_0h-LHX5_MA1519.2 7 bp overlap
LHX6 1 dataset
Motif ES_0h ES_0h-LHX6_MA0658.2 8 bp overlap
LHX9 1 dataset
Motif ES_0h ES_0h-LHX9_MA0701.3 7 bp overlap
LMX1A 1 dataset
Motif ES_0h ES_0h-LMX1A_MA0702.3 7 bp overlap
LMX1B 1 dataset
Motif ES_0h ES_0h-LMX1B_MA0703.3 8 bp overlap
Lhx1 1 dataset
Motif ES_0h ES_0h-Lhx1_MA1518.3 10 bp overlap
Lhx4 1 dataset
Motif ES_0h ES_0h-Lhx4_MA0704.2 6 bp overlap
Lhx8 1 dataset
Motif ES_0h ES_0h-Lhx8_MA0705.2 6 bp overlap
MAFF 1 dataset
Motif ES_0h ES_0h-MAFF_MA0495.4 11 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 217 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 186 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 257 bp overlap
MEIS1 1 dataset
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MEOX1 1 dataset
Motif ES_0h ES_0h-MEOX1_MA0661.2 7 bp overlap
MEOX2 1 dataset
Motif ES_0h ES_0h-MEOX2_MA0706.2 7 bp overlap
MIXL1 1 dataset
Motif ES_0h ES_0h-MIXL1_MA0662.2 6 bp overlap
MNX1 1 dataset
Motif ES_0h ES_0h-MNX1_MA0707.3 6 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 217 bp overlap
Mafb 1 dataset
Motif ES_0h ES_0h-Mafb_MA0117.3 11 bp overlap
Mafg 1 dataset
Motif ES_0h ES_0h-Mafg_MA0659.4 12 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 281 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 228 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 281 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 281 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 248 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 281 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 281 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 281 bp overlap
ChIP hESC GSE18292.NANOG.hESC 183 bp overlap
ChIP hESC GSE20650.NANOG.hESC 188 bp overlap
NIPBL 4 datasets
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 249 bp overlap
ChIP hESC GSE64758.NIPBL.hESC 197 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 224 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 191 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 197 bp overlap
NKX6-1 1 dataset
Motif ES_0h ES_0h-NKX6-1_MA0674.2 7 bp overlap
NKX6-2 1 dataset
Motif ES_0h ES_0h-NKX6-2_MA0675.2 6 bp overlap
NOTO 1 dataset
Motif ES_0h ES_0h-NOTO_MA0710.2 7 bp overlap
NRL 1 dataset
Motif ES_0h ES_0h-NRL_MA0842.3 12 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
PAX4 1 dataset
Motif ES_0h ES_0h-PAX4_MA0068.2 8 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 231 bp overlap
PDX1 1 dataset
Motif ES_0h ES_0h-PDX1_MA0132.3 6 bp overlap
POLR2A 2 datasets
ChIP GM23338 ENCFF450WCS 263 bp overlap
ChIP H1 ENCFF833NJP 198 bp overlap
POU1F1 1 dataset
Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap
POU2F1::SOX2 2 datasets
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU2F2 1 dataset
Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap
POU3F1 1 dataset
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
POU5F1 13 datasets
ChIP GM23338 ENCFF333SNB 262 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 281 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 281 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 281 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 186 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 234 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 281 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 233 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 281 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 281 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 272 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 231 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 249 bp overlap
POU6F1 1 dataset
Motif ES_0h ES_0h-POU6F1_MA0628.2 6 bp overlap
POU6F2 1 dataset
Motif ES_0h ES_0h-POU6F2_MA0793.2 9 bp overlap
PRDM14 3 datasets
ChIP NCCIT GSE71675.PRDM14.NCCIT 281 bp overlap
ChIP hESC GSE22767.PRDM14.hESC 281 bp overlap
ChIP hESC GSE138674.PRDM14.hESC 281 bp overlap
PRRX1 1 dataset
Motif ES_0h ES_0h-PRRX1_MA0716.2 6 bp overlap
PRRX2 1 dataset
Motif ES_0h ES_0h-PRRX2_MA0075.4 7 bp overlap
Pou5f1::Sox2 2 datasets
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
RAD21 3 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 254 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 236 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 232 bp overlap
RAX2 1 dataset
Motif ES_0h ES_0h-RAX2_MA0717.2 6 bp overlap
RBPJ 1 dataset
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 281 bp overlap
RFX7 2 datasets
Motif DE_12h DE_12h-RFX7_MA1554.2 8 bp overlap
Motif ES_0h ES_0h-RFX7_MA1554.2 8 bp overlap
RNF2 3 datasets
ChIP WA01 GSE104690.RNF2.WA01 272 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 281 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 281 bp overlap
RXRA 1 dataset
ChIP WA01 ENCSR000BJW.RXRA.WA01 208 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 131 bp overlap
Rfx6 2 datasets
Motif DE_12h DE_12h-Rfx6_MA1724.2 9 bp overlap
Motif ES_0h ES_0h-Rfx6_MA1724.2 9 bp overlap
SHOX 1 dataset
Motif ES_0h ES_0h-SHOX_MA0630.2 6 bp overlap
SMARCA4 4 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 256 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 271 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 281 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 265 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 281 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 281 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 247 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 261 bp overlap
SOX2 7 datasets
ChIP H9 GSE46837.SOX2.H9 281 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 281 bp overlap
ChIP hESC GSE69479.SOX2.hESC 249 bp overlap
ChIP hESC GSE18292.SOX2.hESC 197 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 281 bp overlap
ChIP hiPSC_3s2 GSE81899.SOX2.hiPSC_3s2 204 bp overlap
ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 244 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 281 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 281 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 223 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 152 bp overlap
SUZ12 1 dataset
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 224 bp overlap
Shox2 1 dataset
Motif ES_0h ES_0h-Shox2_MA0720.2 6 bp overlap
Stat2 2 datasets
Motif ES_0h ES_0h-Stat2_MA1623.2 10 bp overlap
Motif ES_0h ES_0h-Stat2_MA1623.2 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 264 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 126 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 281 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 281 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 245 bp overlap
TLX2 1 dataset
Motif ES_0h ES_0h-TLX2_MA1577.2 6 bp overlap
TP53 1 dataset
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 245 bp overlap
UNCX 1 dataset
Motif ES_0h ES_0h-UNCX_MA0721.2 6 bp overlap
VAX1 1 dataset
Motif ES_0h ES_0h-VAX1_MA0722.2 7 bp overlap
VAX2 1 dataset
Motif ES_0h ES_0h-VAX2_MA0723.3 6 bp overlap
VSX1 1 dataset
Motif ES_0h ES_0h-VSX1_MA0725.2 7 bp overlap
VSX2 1 dataset
Motif ES_0h ES_0h-VSX2_MA0726.2 7 bp overlap
ZBTB7C 1 dataset
Motif DE_12h DE_12h-ZBTB7C_MA0695.2 8 bp overlap
ZFP69B 1 dataset
ChIP HEK293T GSE78099.ZFP69B.HEK293T 117 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 120 bp overlap
ZNF143 1 dataset
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 250 bp overlap
ZNF274 3 datasets
Motif DE_12h DE_12h-ZNF274_MA1592.2 12 bp overlap
ChIP H1 ENCFF434LDY 281 bp overlap
ChIP WA01 ENCSR000EUN.ZNF274.WA01 227 bp overlap
ZNF418 1 dataset
Motif ES_0h ES_0h-ZNF418_MA1980.1 15 bp overlap
ZSCAN4 1 dataset
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
mix-a 1 dataset
Motif ES_0h ES_0h-mix-a_MA0621.2 7 bp overlap