chr19:44,758,633–44,759,104

chr19 : 44,758,633 – 44,759,104

471 bp 80 TFs 14 linked genes

This 471 bp open chromatin element is linked to 14 target genes and is bound by 80 transcription factors.

Linked Genes

14 genes

Gene	Expression	Dist. to TSS	Distance	Link type
MIR8085		at TSS	At TSS	Proximity
BCL3		9.9 kb	Proximal	Proximity
CBLC		19.0 kb	Distal	Multiome
CEACAM16-AS1		40.2 kb	Distal	Multiome
BCAM		50.1 kb	Distal	Multiome
NECTIN2		87.4 kb	Distal	Multiome
PVR		115.1 kb	Distal	Multiome
TOMM40		132.3 kb	Distal	Multiome
APOE		146.9 kb	Distal	Multiome
APOC1		155.4 kb	Distal	Multiome
CLPTM1		196.5 kb	Distal	Multiome
RELB		242.5 kb	Distal	Multiome
ZNF180		258.4 kb	Distal	Multiome
CLASRP		280.2 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

80 transcription factors

ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 142 bp overlap

ARID1A 1 dataset

ChIP RMG-I GSE104545.ARID1A.RMG-I 321 bp overlap

ChIP MCF-7_aza GSE85352.ARNT.MCF-7_aza 95 bp overlap

ASH2L 2 datasets

ChIP H1 ENCFF399KAM 323 bp overlap

ChIP WA01 ENCSR850KIP.ASH2L.WA01 206 bp overlap

BCOR 2 datasets

ChIP WA01 GSE104690.BCOR.WA01 67 bp overlap

ChIP WA01 GSE104690.BCOR.WA01 157 bp overlap

BRD4 4 datasets

ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 208 bp overlap

ChIP K-562_iBET-BD1-IFNG GSE138084.BRD4.K-562_iBET-BD1-IFNG 178 bp overlap

ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 64 bp overlap

ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 237 bp overlap

CTBP2 2 datasets

ChIP H1 ENCFF329MAX 61 bp overlap

ChIP H1 ENCFF329MAX 265 bp overlap

CTCF 5 datasets

ChIP adrenal gland ENCFF886WNR 108 bp overlap

ChIP chondrocyte ENCFF134ORZ 217 bp overlap

ChIP dorsolateral prefrontal cortex ENCFF257LSY 165 bp overlap

ChIP endodermal cell ENCFF471YCZ 96 bp overlap

ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 96 bp overlap

ChIP HEK293 ENCFF336LFH 194 bp overlap

EP300 1 dataset

ChIP A-549 ENCSR000BPW.EP300.A-549 199 bp overlap

ChIP breast_tumor_Male_21 GSE104399.ESR1.breast_tumor_Male_21 233 bp overlap

ETS1 3 datasets

ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 308 bp overlap

ChIP cardiomyocyte_D14 GSE129986.ETS1.cardiomyocyte_D14 125 bp overlap

ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 133 bp overlap

ChIP WTC11 ENCFF812SCD 170 bp overlap

FOSL1 1 dataset

ChIP BT-549 GSE112961.FOSL1.BT-549 200 bp overlap

GATA6 1 dataset

ChIP DE_D1 S41-DE-d1-GATA6-exp2 135 bp overlap

GLIS1 2 datasets

ChIP HEK293 ENCFF299RSE 159 bp overlap

ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 328 bp overlap

GLIS2 1 dataset

ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 292 bp overlap

GLIS3 1 dataset

ChIP H9_plus GSE109562.GLIS3.H9_plus 471 bp overlap

HEXIM1 1 dataset

ChIP HCT-116 GSE72622.HEXIM1.HCT-116 196 bp overlap

IFNA1 2 datasets

ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 199 bp overlap

ChIP Huh-7_NS5 GSE110511.IFNA1.Huh-7_NS5 222 bp overlap

IKZF1 4 datasets

ChIP K-562 ENCSR395HWC.IKZF1.K-562 289 bp overlap

ChIP K562 ENCFF348IBL 454 bp overlap

ChIP K562 ENCFF771OHZ 235 bp overlap

ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 238 bp overlap

IKZF3 1 dataset

ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 206 bp overlap

ChIP A549 ENCFF846DUV 188 bp overlap

ChIP A549 ENCFF846DUV 471 bp overlap

ChIP Karpas-299 GSE151413.JUN.Karpas-299 269 bp overlap

ChIP Karpas-299 GSE151413.JUNB.Karpas-299 267 bp overlap

KDM1A 1 dataset

ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 264 bp overlap

KDM4A 1 dataset

ChIP WA01 ENCSR000AVC.KDM4A.WA01 97 bp overlap

KLF1 2 datasets

ChIP HEK293 ENCFF159QSW 122 bp overlap

ChIP HEK293 ENCSR859BMR.KLF1.HEK293 371 bp overlap

KLF14 1 dataset

ChIP HEK293 ENCSR780ESQ.KLF14.HEK293 355 bp overlap

KLF17 1 dataset

ChIP HEK293 ENCSR065WUF.KLF17.HEK293 227 bp overlap

ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 137 bp overlap

ChIP HEK293 ENCSR635NOQ.KLF8.HEK293 215 bp overlap

KLF9 2 datasets

ChIP GBM1A GSE62211.KLF9.GBM1A 203 bp overlap

ChIP HEK293 ENCSR076EZB.KLF9.HEK293 276 bp overlap

ChIP WTC11 ENCFF223QFY 93 bp overlap

ChIP HEK293 ENCFF994GSG 471 bp overlap

ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 421 bp overlap

ChIP IMR-90 ENCSR000EFF.MAZ.IMR-90 233 bp overlap

MED1 2 datasets

ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 151 bp overlap

ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 206 bp overlap

ChIP NB69 GSE138295.MYC.NB69 238 bp overlap

ChIP NB-1643 GSE138295.MYCN.NB-1643 222 bp overlap

NCAPH2 1 dataset

ChIP IMR-90_Bethyl275_OIS GSE118494.NCAPH2.IMR-90_Bethyl275_OIS 147 bp overlap

NOTCH1 1 dataset

ChIP HPBALL GSE39263.NOTCH1.HPBALL 171 bp overlap

NR3C1 1 dataset

ChIP A-549 ENCSR000BJR.NR3C1.A-549 115 bp overlap

PCBP1 2 datasets

ChIP Hep-G2 ENCSR872EVQ.PCBP1.Hep-G2 215 bp overlap

ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 256 bp overlap

POLR2A 6 datasets

ChIP HeLa-S3 ENCFF773DNG 272 bp overlap

ChIP MCF-7 ENCFF164XWP 285 bp overlap

ChIP MCF-7 ENCFF164XWP 285 bp overlap

ChIP esophagus muscularis mucosa ENCFF432ZCY 57 bp overlap

ChIP gastrocnemius medialis ENCFF081DTE 54 bp overlap

ChIP spleen ENCFF706IUS 367 bp overlap

POU5F1 2 datasets

ChIP BG03 GSE21614.POU5F1.BG03 224 bp overlap

ChIP DE_D1 DED1-OCT4_Batch_II 232 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 397 bp overlap

RBBP5 1 dataset

ChIP WA01 ENCSR000AQC.RBBP5.WA01 324 bp overlap

RCOR1 1 dataset

ChIP A-549 ENCSR618ICR.RCOR1.A-549 161 bp overlap

ChIP 786-O GSE86092.RELA.786-O 244 bp overlap

ChIP A-549 ENCSR000BQP.REST.A-549 150 bp overlap

ChIP fibroblast GSE139053.RNF2.fibroblast 129 bp overlap

ChIP HCC70 GSE126380.RORC.HCC70 452 bp overlap

ChIP liver ENCFF077DAP 342 bp overlap

SAP30 2 datasets

ChIP H1 ENCFF149IOE 168 bp overlap

ChIP WA01 ENCSR000ATR.SAP30.WA01 123 bp overlap

SIN3A 1 dataset

ChIP A-549 ENCSR513XQX.SIN3A.A-549 203 bp overlap

SMAD4 1 dataset

ChIP Caco-2 GSE112946.SMAD4.Caco-2 167 bp overlap

SMARCA4 2 datasets

ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 351 bp overlap

ChIP MCF-10A GSE74716.SMARCA4.MCF-10A 346 bp overlap

SMARCB1 1 dataset

ChIP HeLa-S3 ENCSR000EDK.SMARCB1.HeLa-S3 169 bp overlap

SMARCC1 1 dataset

ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 365 bp overlap

SMC1 2 datasets

ChIP DKO GSE131606.SMC1.DKO 223 bp overlap

ChIP IMR-90_OIS GSE118494.SMC1.IMR-90_OIS 71 bp overlap

ChIP H1 ENCFF263FUH 321 bp overlap

ChIP HEK293 GSE76494.SP1.HEK293 159 bp overlap

ChIP WA01 ENCSR000BIR.SP1.WA01 207 bp overlap

ChIP HEK293 ENCSR141PZA.SP3.HEK293 252 bp overlap

ChIP HEK293 GSE76494.SP4.HEK293 446 bp overlap

SREBP2 1 dataset

ChIP HCC70 GSE126380.SREBP2.HCC70 339 bp overlap

SUZ12 1 dataset

ChIP H1 ENCFF881NFR 274 bp overlap

ChIP WA01 ENCSR000BHO.TAF1.WA01 203 bp overlap

ChIP hESC GSE122298.TBP.hESC 167 bp overlap

TCF12 2 datasets

ChIP A-549 ENCSR000BQQ.TCF12.A-549 377 bp overlap

ChIP WA01 ENCSR000BIT.TCF12.WA01 119 bp overlap

TFCP2L1 1 dataset

ChIP A549 ENCFF393VBT 161 bp overlap

TGIF2 1 dataset

ChIP WTC11 ENCFF649SHI 137 bp overlap

TOP2A 1 dataset

ChIP K-562_pBQ GSE79593.TOP2A.K-562_pBQ 76 bp overlap

TP53 3 datasets

ChIP GM00011 GSE55727.TP53.GM00011 79 bp overlap

ChIP H9 GSE142050.TP53.H9 98 bp overlap

ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 96 bp overlap

ZBTB33 4 datasets

ChIP HepG2 ENCFF778UKV 112 bp overlap

ChIP K562 ENCFF427SDV 436 bp overlap

ChIP K562 ENCFF875HLX 412 bp overlap

ChIP MCF-7 ENCFF622BUU 321 bp overlap

ZBTB7A 4 datasets

ChIP K-562 GSE103445.ZBTB7A.K-562 355 bp overlap

ChIP K-562 ENCSR000BME.ZBTB7A.K-562 115 bp overlap

ChIP K-562 ENCSR000BME.ZBTB7A.K-562 107 bp overlap

ChIP K562 ENCFF579ZGM 310 bp overlap

ZFP36 5 datasets

ChIP A-549 ENCSR294JWV.ZFP36.A-549 396 bp overlap

ChIP A549 ENCFF505LUC 291 bp overlap

ChIP GM12878 ENCSR900XDB.ZFP36.GM12878 123 bp overlap

ChIP K-562 ENCSR776CYN.ZFP36.K-562 307 bp overlap

ChIP K562 ENCFF255RZG 297 bp overlap

ZMYND11 1 dataset

ChIP HeLa GSE51672.ZMYND11.HeLa 125 bp overlap

ZNF143 1 dataset

ChIP WA01 ENCSR000EBW.ZNF143.WA01 143 bp overlap

ZNF148 1 dataset

ChIP K-562 GSE121133.ZNF148.K-562 174 bp overlap

ZNF263 1 dataset

ChIP WTC11 ENCFF893RTM 421 bp overlap

ZNF281 1 dataset

ChIP K-562 GSE121133.ZNF281.K-562 305 bp overlap

ZNF891 1 dataset

ChIP Hep-G2 ENCSR020CLV.ZNF891.Hep-G2 157 bp overlap

ZSCAN22 3 datasets

ChIP HEK293 GSE76494.ZSCAN22.HEK293 464 bp overlap

ChIP HepG2 ENCFF246MVE 342 bp overlap

ChIP HepG2 ENCFF246MVE 334 bp overlap