chr2 : 11,540,555 11,540,748
193 bp 108 TFs 2 linked genes
This 193 bp open chromatin element is linked to MIR4429 and GREB1 and is bound by 108 transcription factors.
Linked Genes
2 genes
Distance
Gene Expression Dist. to TSS Distance Link type
MIR4429 at TSS At TSS Proximity
GREB1 2.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:11,535,555 – 11,545,748
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
108 transcription factors
Source
Cell type
None 1 dataset
ChIP HepG2 ENCFF731CFD 193 bp overlap
AR 7 datasets
ChIP LNCaP GSE110655.AR.LNCaP 193 bp overlap
ChIP LNCaP ERP001226.AR.LNCaP 97 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 193 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 193 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 193 bp overlap
ChIP VCaP_shERG GSE110655.AR.VCaP_shERG 127 bp overlap
ChIP prostate-cancer_C4-2-CON GSE136128.AR.prostate-cancer_C4-2-CON 136 bp overlap
ARID2 1 dataset
ChIP HepG2 ENCFF317ZHO 80 bp overlap
BRD3 1 dataset
ChIP MCF-7_E2 GSE109571.BRD3.MCF-7_E2 127 bp overlap
BRD4 2 datasets
ChIP LNCaP-C4-2_F133V_JQ1 GSE88871.BRD4.LNCaP-C4-2_F133V_JQ1 193 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 193 bp overlap
CDK8 1 dataset
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 57 bp overlap
CEBPA 1 dataset
ChIP HepG2 ENCFF175DFS 58 bp overlap
CREB1 1 dataset
ChIP MCF-7 ENCFF341ZEM 110 bp overlap
CTCF 1 dataset
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 193 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF680YXW 193 bp overlap
DRAP1 2 datasets
ChIP Hep-G2 ENCSR765MKZ.DRAP1.Hep-G2 165 bp overlap
ChIP HepG2 ENCFF296JHR 193 bp overlap
E2F4 1 dataset
ChIP HepG2 ENCFF311TOD 193 bp overlap
EED 1 dataset
ChIP HepG2 ENCFF347CCA 90 bp overlap
ESR1 6 datasets
ChIP MCF-7 GSE148277.ESR1.MCF-7 193 bp overlap
ChIP MCF-7_E2 GSE115607.ESR1.MCF-7_E2 155 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 130 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 159 bp overlap
ChIP T-47D_PROG GSE68355.ESR1.T-47D_PROG 191 bp overlap
ChIP breast_tumor_Male_30 GSE104399.ESR1.breast_tumor_Male_30 75 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 126 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 193 bp overlap
EZH2 2 datasets
ChIP PC-9 ENCSR793USK.EZH2.PC-9 193 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 100 bp overlap
FOXA1 2 datasets
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 82 bp overlap
ChIP primary-prostate-cancer_G2_DSG GSE114737.FOXA1.primary-prostate-cancer_G2_DSG 93 bp overlap
GATA3 1 dataset
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 57 bp overlap
GATAD2A 1 dataset
ChIP HepG2 ENCFF252XNH 120 bp overlap
GMEB1 1 dataset
ChIP Hep-G2 ENCSR780OXL.GMEB1.Hep-G2 192 bp overlap
HMG20B 1 dataset
ChIP HepG2 ENCFF756WYV 193 bp overlap
HNF1B 1 dataset
ChIP HepG2 ENCFF928THX 193 bp overlap
HOXA10 2 datasets
ChIP HepG2 ENCFF422LBU 193 bp overlap
ChIP HepG2 ENCFF422LBU 90 bp overlap
HOXB13 3 datasets
ChIP prostate-cancer_PDX_141 GSE130408.HOXB13.prostate-cancer_PDX_141 134 bp overlap
ChIP prostate-cancer_PDX_167 GSE130408.HOXB13.prostate-cancer_PDX_167 59 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 76 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 137 bp overlap
JUN 1 dataset
ChIP HepG2 ENCFF910FFW 81 bp overlap
KAT7 2 datasets
ChIP HepG2 ENCFF613PTN 193 bp overlap
ChIP HepG2 ENCFF613PTN 123 bp overlap
KAT8 1 dataset
ChIP HepG2 ENCFF890JFC 109 bp overlap
KDM5A 1 dataset
ChIP HepG2 ENCFF105YGO 193 bp overlap
KLF6 1 dataset
ChIP Hep-G2 ENCSR757EKM.KLF6.Hep-G2 105 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 193 bp overlap
MAX 1 dataset
ChIP HepG2 ENCFF479OHI 117 bp overlap
MBD4 1 dataset
ChIP HepG2 ENCFF785HSD 193 bp overlap
MED1 1 dataset
ChIP VCaP_R1881 GSE148358.MED1.VCaP_R1881 84 bp overlap
MED12 1 dataset
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 103 bp overlap
MEIS1 1 dataset
ChIP HepG2 ENCFF706DID 169 bp overlap
MSX2 2 datasets
ChIP MCF-7 ENCFF179YRV 137 bp overlap
ChIP MCF-7 ENCFF179YRV 99 bp overlap
MXD4 1 dataset
ChIP Hep-G2 ENCSR441KFW.MXD4.Hep-G2 193 bp overlap
MYBL2 1 dataset
ChIP Hep-G2 ENCSR581KCO.MYBL2.Hep-G2 143 bp overlap
MYCN 1 dataset
ChIP LNCaP_EtOH GSE117304.MYCN.LNCaP_EtOH 156 bp overlap
MYNN 1 dataset
ChIP Hep-G2 ENCSR398TMP.MYNN.Hep-G2 107 bp overlap
NAIF1 1 dataset
ChIP HepG2 ENCFF291NIS 113 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 193 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 193 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 150 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 193 bp overlap
ChIP hESC GSE18292.NANOG.hESC 64 bp overlap
NCOR1 1 dataset
ChIP HepG2 ENCFF685NAH 193 bp overlap
NEUROG2 3 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 129 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 177 bp overlap
ChIP MRC-5_N_02DPT GSE75910.NEUROG2.MRC-5_N_02DPT 118 bp overlap
NKX2-5 1 dataset
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 104 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 151 bp overlap
NR3C1 2 datasets
ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 193 bp overlap
ChIP breast_tumor_Male_21 GSE104399.NR3C1.breast_tumor_Male_21 120 bp overlap
NR5A1 1 dataset
ChIP HepG2 ENCFF970YZO 193 bp overlap
OVOL1 1 dataset
ChIP MCF-7 ENCFF537GWI 84 bp overlap
PGR 3 datasets
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 137 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 145 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 167 bp overlap
PHF8 1 dataset
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 193 bp overlap
POLR2A 5 datasets
ChIP HepG2 ENCFF252NAR 193 bp overlap
ChIP HepG2 ENCFF350RIU 50 bp overlap
ChIP HepG2 ENCFF736SLT 117 bp overlap
ChIP MCF-7 ENCFF164XWP 193 bp overlap
ChIP MCF-7 ENCFF309IKZ 193 bp overlap
POU5F1 6 datasets
ChIP H1 ENCFF698ZAP 124 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 193 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 146 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 86 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 193 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 193 bp overlap
PPARG 1 dataset
ChIP Hep-G2 ENCSR130VQL.PPARG.Hep-G2 156 bp overlap
PRMT3 1 dataset
ChIP HepG2 ENCFF257VCG 178 bp overlap
RARA 1 dataset
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 140 bp overlap
RBFOX2 2 datasets
ChIP HepG2 ENCFF554DMZ 193 bp overlap
ChIP HepG2 ENCFF939HTZ 193 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 193 bp overlap
SALL1 1 dataset
ChIP HepG2 ENCFF426MCK 184 bp overlap
SAP130 1 dataset
ChIP HepG2 ENCFF892EHZ 101 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 193 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 185 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 193 bp overlap
SIN3A 1 dataset
ChIP HepG2 ENCFF394WQQ 160 bp overlap
SMAD7 1 dataset
ChIP HepG2 ENCFF850FXR 149 bp overlap
SMARCA4 3 datasets
ChIP 22Rv1 GSE115615.SMARCA4.22Rv1 193 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 97 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 179 bp overlap
SMARCB1 2 datasets
ChIP Hep-G2 GSE69566.SMARCB1.Hep-G2 61 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 120 bp overlap
SMARCC1 3 datasets
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 84 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 193 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 139 bp overlap
SMYD3 2 datasets
ChIP HepG2 ENCFF612TNJ 193 bp overlap
ChIP HepG2 ENCFF612TNJ 193 bp overlap
SNAPC2 1 dataset
ChIP HepG2 ENCFF237IWR 193 bp overlap
SNAPC5 1 dataset
ChIP HepG2 ENCFF853IKB 182 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 95 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 133 bp overlap
TAF1 2 datasets
ChIP HepG2 ENCFF946IUP 190 bp overlap
ChIP MCF-7 ENCFF091WNP 118 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 193 bp overlap
TFAP4 1 dataset
ChIP HepG2 ENCFF932XOY 104 bp overlap
TFE3 1 dataset
ChIP Hep-G2 ENCSR589SNT.TFE3.Hep-G2 81 bp overlap
TGIF2 1 dataset
ChIP HepG2 ENCFF421ZJN 132 bp overlap
YY1AP1 1 dataset
ChIP HEK293_siCtrl GSE130135.YY1AP1.HEK293_siCtrl 72 bp overlap
ZBTB37 1 dataset
ChIP HepG2 ENCFF717TTW 79 bp overlap
ZC3H4 1 dataset
ChIP HepG2 ENCFF603QUY 193 bp overlap
ZC3H8 1 dataset
ChIP HepG2 ENCFF862NOM 178 bp overlap
ZFP1 1 dataset
ChIP HepG2 ENCFF148GGU 193 bp overlap
ZFP36L1 1 dataset
ChIP HepG2 ENCFF375BAZ 193 bp overlap
ZFP57 1 dataset
ChIP hESC GSE115387.ZFP57.hESC 69 bp overlap
ZFX 4 datasets
ChIP MCF-7 ENCFF009NAJ 193 bp overlap
ChIP MCF-7 ENCFF009NAJ 193 bp overlap
ChIP MCF-7 ENCFF009NAJ 172 bp overlap
ChIP MCF-7 GSE102616.ZFX.MCF-7 137 bp overlap
ZFY 1 dataset
ChIP HepG2 ENCFF106ELT 78 bp overlap
ZGPAT 2 datasets
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 186 bp overlap
ChIP HepG2 ENCFF055YSO 193 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 146 bp overlap
ZNF181 1 dataset
ChIP HepG2 ENCFF222AKV 126 bp overlap
ZNF221 1 dataset
ChIP HepG2 ENCFF374BUN 111 bp overlap
ZNF256 1 dataset
ChIP HepG2 ENCFF863RQR 141 bp overlap
ZNF264 1 dataset
ChIP HepG2 ENCFF453WJV 193 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 142 bp overlap
ZNF468 1 dataset
ChIP HepG2 ENCFF574PHK 193 bp overlap
ZNF483 1 dataset
ChIP HepG2 ENCFF464ZKH 179 bp overlap
ZNF510 1 dataset
ChIP HepG2 ENCFF088QOO 155 bp overlap
ZNF512B 1 dataset
ChIP HepG2 ENCFF126PJB 147 bp overlap
ZNF572 1 dataset
ChIP HepG2 ENCFF507EFS 93 bp overlap
ZNF704 1 dataset
ChIP HepG2 ENCFF408LBU 193 bp overlap
ZSCAN5A 1 dataset
ChIP HepG2 ENCFF633DFI 193 bp overlap
ZXDC 1 dataset
ChIP MCF-7 GSE97661.ZXDC.MCF-7 181 bp overlap