chr1 : 246,268,018 246,268,566
548 bp 131 TFs 0 linked genes
This 548 bp open chromatin element has no linked target genes and is bound by 131 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:246,263,018 – 246,273,566
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
131 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 ERP001226.AR.MCF-7 135 bp overlap
BARX1 1 dataset
Motif DE_60h DE_60h-BARX1_MA0875.2 6 bp overlap
BSX 1 dataset
Motif DE_60h DE_60h-BSX_MA0876.2 6 bp overlap
CAVIN1 1 dataset
ChIP K562 ENCFF731YBD 213 bp overlap
CBFA2T3 1 dataset
ChIP K562 ENCFF673OEZ 343 bp overlap
CDX1 1 dataset
Motif DE_60h DE_60h-CDX1_MA0878.3 10 bp overlap
CDX4 2 datasets
Motif DE_60h DE_60h-CDX4_MA1473.2 9 bp overlap
ChIP WTC11 ENCFF395PGH 108 bp overlap
CXXC5 1 dataset
ChIP K562 ENCFF497CZN 368 bp overlap
DDX20 2 datasets
ChIP K-562 ENCSR382AIB.DDX20.K-562 90 bp overlap
ChIP K562 ENCFF373BEC 182 bp overlap
DLX1 1 dataset
Motif DE_60h DE_60h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_60h DE_60h-DLX6_MA0882.2 6 bp overlap
DMBX1 1 dataset
ChIP K562 ENCFF972HXB 218 bp overlap
Dlx3 1 dataset
Motif DE_60h DE_60h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_60h DE_60h-Dlx4_MA0881.2 6 bp overlap
E2F3 2 datasets
ChIP K-562 ENCSR036QIR.E2F3.K-562 90 bp overlap
ChIP K562 ENCFF922ILX 167 bp overlap
E2F5 1 dataset
ChIP K562 ENCFF688PUB 372 bp overlap
ELF2 1 dataset
ChIP K562 ENCFF787SME 275 bp overlap
EP300 2 datasets
ChIP Ishikawa ENCFF364ZWT 180 bp overlap
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 50 bp overlap
ESR1 54 datasets
Motif DE_60h DE_60h-ESR1_MA0112.4 15 bp overlap
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 308 bp overlap
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 218 bp overlap
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 117 bp overlap
ChIP Ishikawa_C1-12 GSE147141.ESR1.Ishikawa_C1-12 427 bp overlap
ChIP Ishikawa_C1-5 GSE147141.ESR1.Ishikawa_C1-5 240 bp overlap
ChIP Ishikawa_C2-14 GSE147141.ESR1.Ishikawa_C2-14 200 bp overlap
ChIP Ishikawa_C2-3 GSE147141.ESR1.Ishikawa_C2-3 238 bp overlap
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 238 bp overlap
ChIP Ishikawa_Dex_E2 GSE109891.ESR1.Ishikawa_Dex_E2 150 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 262 bp overlap
ChIP Ishikawa_E2 GSE109891.ESR1.Ishikawa_E2 279 bp overlap
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 244 bp overlap
ChIP Ishikawa_E2_D538G GSE132426.ESR1.Ishikawa_E2_D538G 548 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 548 bp overlap
ChIP Ishikawa_E2_clone2 GSE132426.ESR1.Ishikawa_E2_clone2 309 bp overlap
ChIP Ishikawa_ETV4-KO1 GSE129803.ESR1.Ishikawa_ETV4-KO1 258 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 388 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 363 bp overlap
ChIP Ishikawa_ETV4-OE GSE129803.ESR1.Ishikawa_ETV4-OE 235 bp overlap
ChIP Ishikawa_EnhiE2 GSE99905.ESR1.Ishikawa_EnhiE2 187 bp overlap
ChIP Ishikawa_M1-66 GSE147141.ESR1.Ishikawa_M1-66 172 bp overlap
ChIP Ishikawa_M1-9-1 GSE147141.ESR1.Ishikawa_M1-9-1 248 bp overlap
ChIP Ishikawa_M2-3 GSE147141.ESR1.Ishikawa_M2-3 228 bp overlap
ChIP Ishikawa_M2-5 GSE147141.ESR1.Ishikawa_M2-5 321 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 548 bp overlap
ChIP Ishikawa_siETV4-96h GSE129803.ESR1.Ishikawa_siETV4-96h 388 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 249 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 219 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 420 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 55 bp overlap
ChIP MCF-7 ENCFF004AKH 326 bp overlap
ChIP MCF-7 GSE76893.ESR1.MCF-7 162 bp overlap
ChIP MCF-7 GSE41561.ESR1.MCF-7 135 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.ESR1.MCF-7_ARID1A-KO_4-OHT_clone14 157 bp overlap
ChIP MCF-7_DMSO GSE125594.ESR1.MCF-7_DMSO 244 bp overlap
ChIP MCF-7_E2 GSE60270.ESR1.MCF-7_E2 184 bp overlap
ChIP MCF-7_E2 GSE59530.ESR1.MCF-7_E2 169 bp overlap
ChIP MCF-7_E2 ERP000209.ESR1.MCF-7_E2 121 bp overlap
ChIP MCF-7_E2 GSE60270.ESR1.MCF-7_E2 176 bp overlap
ChIP MCF-7_E2-20min-ERalpha GSE94023.ESR1.MCF-7_E2-20min-ERalpha 222 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 157 bp overlap
ChIP MCF-7_E2_TNF GSE59530.ESR1.MCF-7_E2_TNF 176 bp overlap
ChIP MCF-7_LTED_E2 GSE86538.ESR1.MCF-7_LTED_E2 156 bp overlap
ChIP MCF-7_LY2_ETOH GSE54592.ESR1.MCF-7_LY2_ETOH 131 bp overlap
ChIP MCF-7_SHCRT_E2 ERP000380.ESR1.MCF-7_SHCRT_E2 113 bp overlap
ChIP MCF-7_SHCTR_E2_TNF GSE59530.ESR1.MCF-7_SHCTR_E2_TNF 128 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 212 bp overlap
ChIP MCF-7_shTEAD4 GSE125594.ESR1.MCF-7_shTEAD4 201 bp overlap
ChIP MDA-MB-134-VI_E2 GSE109103.ESR1.MDA-MB-134-VI_E2 223 bp overlap
ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 270 bp overlap
ChIP U2OS_100nM-E2 GSE151039.ESR1.U2OS_100nM-E2 535 bp overlap
ChIP U2OS_10nM-E2 GSE151039.ESR1.U2OS_10nM-E2 523 bp overlap
ChIP U2OS_10nM-E2-B GSE151039.ESR1.U2OS_10nM-E2-B 515 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 272 bp overlap
ESR2 1 dataset
Motif DE_60h DE_60h-ESR2_MA0258.2 15 bp overlap
ESRRA 2 datasets
Motif DE_60h DE_60h-ESRRA_MA0592.4 9 bp overlap
ChIP K562 ENCFF968PEP 269 bp overlap
ESRRB 1 dataset
Motif DE_60h DE_60h-ESRRB_MA0141.4 10 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 353 bp overlap
Esrrg 1 dataset
Motif DE_60h DE_60h-Esrrg_MA0643.2 9 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 249 bp overlap
FOXN3 1 dataset
Motif DE_60h DE_60h-FOXN3_MA1489.1 8 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 343 bp overlap
ChIP DE DE-GATA4-2 397 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 245 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 287 bp overlap
ChIP DE DE-GATA6-2 449 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 408 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 416 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 434 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 406 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 416 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 269 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 260 bp overlap
ChIP foregut GSE117136.GATA6.foregut 270 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 224 bp overlap
GBX2 1 dataset
Motif DE_60h DE_60h-GBX2_MA0890.2 6 bp overlap
GFI1 2 datasets
Motif DE_12h DE_12h-GFI1_MA0038.3 11 bp overlap
Motif DE_60h DE_60h-GFI1_MA0038.3 11 bp overlap
GMEB1 1 dataset
ChIP K562 ENCFF679VBB 171 bp overlap
GRHL1 1 dataset
Motif DE_60h DE_60h-GRHL1_MA0647.2 10 bp overlap
GRHL2 1 dataset
Motif DE_60h DE_60h-GRHL2_MA1105.3 8 bp overlap
GTF2A2 1 dataset
ChIP K562 ENCFF041WRN 369 bp overlap
Gli2 2 datasets
Motif DE_12h DE_12h-Gli2_MA0734.4 9 bp overlap
Motif DE_60h DE_60h-Gli2_MA0734.4 9 bp overlap
HDAC8 1 dataset
ChIP K562 ENCFF784HCJ 270 bp overlap
HESX1 1 dataset
Motif DE_60h DE_60h-HESX1_MA0894.2 6 bp overlap
HINFP 1 dataset
ChIP K562 ENCFF361QXJ 244 bp overlap
HIVEP1 1 dataset
ChIP K562 ENCFF983WKN 155 bp overlap
HOXA7 1 dataset
Motif DE_60h DE_60h-HOXA7_MA1498.3 6 bp overlap
HOXB9 1 dataset
Motif DE_60h DE_60h-HOXB9_MA1503.2 9 bp overlap
HOXC10 1 dataset
Motif DE_60h DE_60h-HOXC10_MA0905.2 9 bp overlap
HOXC11 1 dataset
Motif DE_60h DE_60h-HOXC11_MA0651.3 11 bp overlap
HOXC12 1 dataset
Motif DE_60h DE_60h-HOXC12_MA0906.2 10 bp overlap
HOXC9 1 dataset
Motif DE_60h DE_60h-HOXC9_MA0485.3 9 bp overlap
HOXD10 1 dataset
Motif DE_60h DE_60h-HOXD10_MA1506.2 10 bp overlap
HOXD11 1 dataset
Motif DE_60h DE_60h-HOXD11_MA0908.2 9 bp overlap
Hmx1 1 dataset
Motif DE_60h DE_60h-Hmx1_MA0896.2 9 bp overlap
Hmx2 1 dataset
Motif DE_60h DE_60h-Hmx2_MA0897.2 15 bp overlap
Hmx3 1 dataset
Motif DE_60h DE_60h-Hmx3_MA0898.2 9 bp overlap
Hoxa11 1 dataset
Motif DE_60h DE_60h-Hoxa11_MA0911.2 9 bp overlap
ID3 2 datasets
ChIP K-562 ENCSR005NMT.ID3.K-562 87 bp overlap
ChIP K562 ENCFF170RNI 272 bp overlap
ILK 1 dataset
ChIP K562 ENCFF055LPP 192 bp overlap
IRF9 1 dataset
ChIP K562 ENCFF346PQL 315 bp overlap
JUN 4 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 445 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 289 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 266 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 244 bp overlap
KDM1A 1 dataset
ChIP K562 ENCFF128TYE 391 bp overlap
KLF6 1 dataset
ChIP K562 ENCFF948QSP 160 bp overlap
LBX2 1 dataset
Motif DE_60h DE_60h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_60h DE_60h-LHX2_MA0700.3 6 bp overlap
MAF 1 dataset
Motif DE_60h DE_60h-MAF_MA1520.2 13 bp overlap
MEF2D 1 dataset
ChIP K562 ENCFF392LDT 281 bp overlap
MSX1 1 dataset
Motif DE_60h DE_60h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_60h DE_60h-MSX2_MA0708.3 6 bp overlap
Msx3 1 dataset
Motif DE_60h DE_60h-Msx3_MA0709.2 6 bp overlap
NR2C1 2 datasets
Motif DE_60h DE_60h-NR2C1_MA1535.2 6 bp overlap
ChIP K562 ENCFF568JLK 272 bp overlap
NR2C2 4 datasets
Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap
Motif DE_60h DE_60h-NR2C2_MA0504.2 14 bp overlap
Motif DE_60h DE_60h-NR2C2_MA1536.2 6 bp overlap
ChIP K562 ENCFF750AXF 517 bp overlap
NR2F1 1 dataset
Motif DE_60h DE_60h-NR2F1_MA0017.3 12 bp overlap
NR2F2 2 datasets
Motif DE_60h DE_60h-NR2F2_MA1111.2 7 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 143 bp overlap
NR2F6 2 datasets
ChIP K562 ENCFF674RQA 431 bp overlap
ChIP K562 ENCFF674RQA 355 bp overlap
NR4A1 3 datasets
Motif DE_60h DE_60h-NR4A1_MA1112.3 8 bp overlap
ChIP K-562 ENCSR130PDE.NR4A1.K-562 96 bp overlap
ChIP K562 ENCFF998LHF 256 bp overlap
NR4A2 1 dataset
Motif DE_60h DE_60h-NR4A2_MA0160.3 8 bp overlap
NR5A1 1 dataset
Motif DE_60h DE_60h-NR5A1_MA1540.3 12 bp overlap
Nobox 1 dataset
Motif DE_60h DE_60h-Nobox_MA0125.2 6 bp overlap
Nr1H2 1 dataset
Motif DE_60h DE_60h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_60h DE_60h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_60h DE_60h-Nr1h3_MA2337.1 6 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 458 bp overlap
PPARG 1 dataset
Motif DE_60h DE_60h-PPARG_MA0066.2 19 bp overlap
PTTG1 2 datasets
ChIP K-562 ENCSR314BBS.PTTG1.K-562 84 bp overlap
ChIP K562 ENCFF017KRM 200 bp overlap
PYGO2 1 dataset
ChIP K562 ENCFF458IIA 180 bp overlap
Ppara 1 dataset
Motif DE_60h DE_60h-Ppara_MA2338.1 7 bp overlap
RARA 1 dataset
Motif DE_60h DE_60h-RARA_MA0729.1 18 bp overlap
RAX 1 dataset
Motif DE_60h DE_60h-RAX_MA0718.2 6 bp overlap
RBPJ 1 dataset
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
RCOR1 1 dataset
ChIP K562 ENCFF216EEJ 297 bp overlap
RFX1 3 datasets
ChIP K-562 ENCSR968GIB.RFX1.K-562 342 bp overlap
ChIP K562 ENCFF421AVO 260 bp overlap
ChIP K562 ENCFF809XVG 451 bp overlap
RORA 1 dataset
Motif DE_60h DE_60h-RORA_MA0071.1 10 bp overlap
RORB 1 dataset
Motif DE_60h DE_60h-RORB_MA1150.2 10 bp overlap
Rarb 1 dataset
Motif DE_60h DE_60h-Rarb_MA0857.1 16 bp overlap
SMAD2 1 dataset
Motif DE_60h DE_60h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 269 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 239 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 248 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 278 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 337 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 309 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 356 bp overlap
SMAD3 2 datasets
ChIP K-562 ENCSR376XAV.SMAD3.K-562 95 bp overlap
ChIP K562 ENCFF885DQE 151 bp overlap
SMAD4 2 datasets
ChIP Caco-2 GSE112946.SMAD4.Caco-2 256 bp overlap
ChIP K562 ENCFF628RBP 395 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 164 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 241 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 265 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
SPIC 1 dataset
Motif DE_60h DE_60h-SPIC_MA0687.2 13 bp overlap
TBX18 2 datasets
ChIP K-562 ENCSR385IUC.TBX18.K-562 102 bp overlap
ChIP K562 ENCFF473CJK 184 bp overlap
TEAD1 1 dataset
ChIP K562 ENCFF465AQA 197 bp overlap
TEAD2 1 dataset
ChIP K562 ENCFF039ZWC 217 bp overlap
TEAD4 2 datasets
ChIP Ishikawa ENCFF772OTG 255 bp overlap
ChIP K562 ENCFF673NIK 293 bp overlap
ZBTB12 1 dataset
ChIP K562 ENCFF933CVM 180 bp overlap
ZBTB40 1 dataset
ChIP K562 ENCFF337GJB 254 bp overlap
ZBTB9 1 dataset
ChIP K562 ENCFF233EFX 161 bp overlap
ZNF175 1 dataset
ChIP K562 ENCFF497AEJ 385 bp overlap
ZNF214 1 dataset
Motif DE_60h DE_60h-ZNF214_MA1975.2 13 bp overlap
ZNF23 1 dataset
ChIP K562 ENCFF805KVM 79 bp overlap
ZNF239 2 datasets
ChIP K-562 ENCSR606KTL.ZNF239.K-562 118 bp overlap
ChIP K562 ENCFF703IKI 180 bp overlap
ZNF257 1 dataset
ChIP K562 ENCFF849YZP 143 bp overlap
ZNF281 1 dataset
ChIP K562 ENCFF594VNM 286 bp overlap
ZNF347 1 dataset
ChIP K562 ENCFF447FCS 101 bp overlap
ZNF395 1 dataset
ChIP K562 ENCFF464EIT 445 bp overlap
ZNF41 2 datasets
ChIP K-562 ENCSR235PYI.ZNF41.K-562 105 bp overlap
ChIP K562 ENCFF693FMG 146 bp overlap
ZNF449 1 dataset
ChIP K562 ENCFF038VEZ 174 bp overlap
ZNF507 1 dataset
ChIP K562 ENCFF235JOG 148 bp overlap
ZNF583 2 datasets
ChIP K562 ENCFF879KXH 101 bp overlap
ChIP K562 ENCFF879KXH 303 bp overlap
ZNF592 2 datasets
ChIP K-562 ENCSR249BHQ.ZNF592.K-562 172 bp overlap
ChIP K562 ENCFF547OSS 358 bp overlap
ZNF639 1 dataset
ChIP K562 ENCFF271FQR 400 bp overlap
ZNF644 2 datasets
ChIP K-562 ENCSR729HVR.ZNF644.K-562 88 bp overlap
ChIP K562 ENCFF290PDB 368 bp overlap
ZNF668 1 dataset
ChIP K562 ENCFF112IUE 177 bp overlap
ZNF740 1 dataset
ChIP K562 ENCFF447IXE 403 bp overlap
ZNF76 1 dataset
ChIP K562 ENCFF267KQX 107 bp overlap
ZNF766 1 dataset
ChIP K562 ENCFF348LDO 433 bp overlap
ZNF79 2 datasets
ChIP K-562 ENCSR995FUM.ZNF79.K-562 104 bp overlap
ChIP K562 ENCFF558WWN 145 bp overlap
Zfp809 1 dataset
Motif DE_60h DE_60h-Zfp809_MA2125.1 9 bp overlap
Zic2 2 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap