chr12 : 92,364,638 – 92,365,030
392 bp 104 TFs 1 linked gene
This 392 bp open chromatin element is linked to LINC02391 and is bound by 104 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC02391 806 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:92,359,638 – 92,370,030
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
104 transcription factors
Source
Cell type
ADNP 1 dataset
ChIP K562 ENCFF492SKF 272 bp overlap
ARID1B 1 dataset
ChIP K-562 ENCSR822CCM.ARID1B.K-562 221 bp overlap
ATF7 2 datasets
ChIP GM12878 ENCFF037PYH 89 bp overlap
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 187 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 236 bp overlap
BCL6 3 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCL6.B-cell_GERMINAL_CENTER 179 bp overlap
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 78 bp overlap
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 255 bp overlap
BCOR 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 295 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 104 bp overlap
BRD4 13 datasets
ChIP BE2C GSE80151.BRD4.BE2C 239 bp overlap
ChIP CLL_patient2_4h_CpG GSE109411.BRD4.CLL_patient2_4h_CpG 159 bp overlap
ChIP GM15850_Syn-TEF1 GSE99402.BRD4.GM15850_Syn-TEF1 392 bp overlap
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 216 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 147 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 367 bp overlap
ChIP MM1-S GSE43743.BRD4.MM1-S 392 bp overlap
ChIP MM1-S_JQ1_50NM GSE42355.BRD4.MM1-S_JQ1_50NM 264 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 311 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 251 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 239 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 246 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 105 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 388 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 246 bp overlap
ChIP K562 ENCFF673OEZ 188 bp overlap
CDK9 1 dataset
ChIP MM1-S_JQ1_50NM GSE49224.CDK9.MM1-S_JQ1_50NM 273 bp overlap
CEBPB 2 datasets
ChIP K-562 ENCSR000BRQ.CEBPB.K-562 144 bp overlap
ChIP K562 ENCFF584CTB 185 bp overlap
CHD4 3 datasets
ChIP 501-mel GSE134848.CHD4.501-mel 148 bp overlap
ChIP GM12878 ENCSR751CJG.CHD4.GM12878 295 bp overlap
ChIP SCMC GSE155861.CHD4.SCMC 294 bp overlap
CREB1 1 dataset
ChIP A-549 ENCSR000BRB.CREB1.A-549 119 bp overlap
CREBBP 2 datasets
ChIP tonsil_GCBC_p5 GSE89688.CREBBP.tonsil_GCBC_p5 269 bp overlap
ChIP tonsil_GCBc_p4 GSE89688.CREBBP.tonsil_GCBc_p4 293 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 94 bp overlap
DACH1 1 dataset
ChIP K562 ENCFF574LOW 310 bp overlap
DPF2 1 dataset
ChIP K-562 ENCSR219BXP.DPF2.K-562 244 bp overlap
EBF1 5 datasets
Motif DE_12h DE_12h-EBF1_MA0154.5 11 bp overlap
ChIP GM12878 ENCFF167CZS 321 bp overlap
ChIP GM12878 ENCSR000DZQ.EBF1.GM12878 156 bp overlap
ChIP LCL GSE75503.EBF1.LCL 260 bp overlap
ChIP MUTUL GSE75503.EBF1.MUTUL 256 bp overlap
ERF::FIGLA 1 dataset
Motif DE_12h DE_12h-ERFFIGLA_MA1934.2 13 bp overlap
ETV2::FIGLA 1 dataset
Motif DE_12h DE_12h-ETV2FIGLA_MA1941.2 13 bp overlap
ETV5::FIGLA 1 dataset
Motif DE_12h DE_12h-ETV5FIGLA_MA1945.2 14 bp overlap
EZH2 1 dataset
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 269 bp overlap
EZH2_phosphoT487 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 392 bp overlap
Ebf4 1 dataset
Motif DE_12h DE_12h-Ebf4_MA2122.1 11 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FLI1 1 dataset
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 206 bp overlap
FOXA1 1 dataset
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 227 bp overlap
FOXP1 1 dataset
ChIP U2932 ERP010999.FOXP1.U2932 105 bp overlap
GATA1 4 datasets
Motif DE_12h DE_12h-GATA1_MA0035.5 7 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 176 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 193 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 208 bp overlap
GATA2 9 datasets
ChIP K-562 ENCSR000EWG.GATA2.K-562 116 bp overlap
ChIP K-562 ENCSR000BKM.GATA2.K-562 117 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 146 bp overlap
ChIP SH-SY5Y ENCFF485YIB 331 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 289 bp overlap
ChIP SK-N-SH ENCFF764OZD 349 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 245 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 207 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 182 bp overlap
GATA3 6 datasets
ChIP BE2C GSE65664.GATA3.BE2C 206 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 331 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 270 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 294 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 239 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 236 bp overlap
GATA3_Nter 1 dataset
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 218 bp overlap
GFI1 1 dataset
Motif DE_12h DE_12h-GFI1_MA0038.3 11 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 298 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 392 bp overlap
Gfi1B 2 datasets
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 318 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 380 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 392 bp overlap
HDAC1 4 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 259 bp overlap
ChIP K-562 ENCSR711VWL.HDAC1.K-562 241 bp overlap
ChIP K562 ENCFF928TKZ 161 bp overlap
ChIP K562 ENCFF968WBH 381 bp overlap
HDAC2 6 datasets
ChIP K-562 ENCSR075HTM.HDAC2.K-562 351 bp overlap
ChIP K-562 ENCSR893WSB.HDAC2.K-562 270 bp overlap
ChIP K-562 ENCSR000BMG.HDAC2.K-562 209 bp overlap
ChIP K562 ENCFF738SPU 202 bp overlap
ChIP K562 ENCFF744ALD 229 bp overlap
ChIP K562 ENCFF919OMP 357 bp overlap
HDGF 1 dataset
ChIP GM12878 ENCFF653WYI 95 bp overlap
HES1 1 dataset
ChIP K-562 ENCSR091JXL.HES1.K-562 241 bp overlap
Hmx1 1 dataset
Motif DE_12h DE_12h-Hmx1_MA0896.2 9 bp overlap
Hmx2 1 dataset
Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap
Hmx3 1 dataset
Motif DE_12h DE_12h-Hmx3_MA0898.2 9 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 352 bp overlap
ISL2 1 dataset
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
KDM1A 6 datasets
ChIP K-562 ENCSR360HRA.KDM1A.K-562 347 bp overlap
ChIP K-562 ENCSR908CMW.KDM1A.K-562 320 bp overlap
ChIP K-562 GSE117944.KDM1A.K-562 254 bp overlap
ChIP K562 ENCFF128TYE 260 bp overlap
ChIP K562 ENCFF133OLU 264 bp overlap
ChIP SET-2_GSK GSE121424.KDM1A.SET-2_GSK 264 bp overlap
KLF5 1 dataset
ChIP HEK293_E419K GSE88976.KLF5.HEK293_E419K 379 bp overlap
MED1 8 datasets
ChIP GM12878 GSE93080.MED1.GM12878 162 bp overlap
ChIP GM12878 GSE93080.MED1.GM12878 167 bp overlap
ChIP P493-6 GSE36354.MED1.P493-6 324 bp overlap
ChIP hMSC-TERT4_D14 GSE104537.MED1.hMSC-TERT4_D14 234 bp overlap
ChIP hMSC-TERT4_D7 GSE104537.MED1.hMSC-TERT4_D7 197 bp overlap
ChIP hMSC-TERT4_adipocyte-D14 GSE113253.MED1.hMSC-TERT4_adipocyte-D14 314 bp overlap
ChIP hMSC-TERT4_adipocyte-D3 GSE113253.MED1.hMSC-TERT4_adipocyte-D3 221 bp overlap
ChIP hMSC-TERT4_adipocyte-D7 GSE113253.MED1.hMSC-TERT4_adipocyte-D7 258 bp overlap
MED12 1 dataset
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 82 bp overlap
MEF2B 1 dataset
ChIP tonsil GSE110682.MEF2B.tonsil 392 bp overlap
MNT 1 dataset
ChIP K562 ENCFF820IGH 372 bp overlap
MYCN 4 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 226 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 260 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 195 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 139 bp overlap
MYOD1 4 datasets
ChIP RD GSE137168.MYOD1.RD 238 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 291 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 169 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 237 bp overlap
MYOG 1 dataset
ChIP RH4 GSE83726.MYOG.RH4 231 bp overlap
NANOG 2 datasets
ChIP WA01 ENCSR000BMT.NANOG.WA01 161 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 210 bp overlap
NBN 1 dataset
ChIP K-562 ENCSR085QEV.NBN.K-562 365 bp overlap
NEUROG2 1 dataset
ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 225 bp overlap
NFIA 1 dataset
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
NFIX 1 dataset
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
NFYA 1 dataset
Motif DE_12h DE_12h-NFYA_MA0060.4 8 bp overlap
NFYC 1 dataset
Motif DE_12h DE_12h-NFYC_MA1644.2 7 bp overlap
NKX2-3 1 dataset
Motif DE_12h DE_12h-NKX2-3_MA0672.2 8 bp overlap
NKX2-8 1 dataset
Motif DE_12h DE_12h-NKX2-8_MA0673.2 8 bp overlap
NR2C1 1 dataset
ChIP K-562 ENCSR178DEG.NR2C1.K-562 201 bp overlap
NR2C2 1 dataset
ChIP K562 ENCFF750AXF 282 bp overlap
NR2F1 1 dataset
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 345 bp overlap
NR2F2 2 datasets
ChIP K-562 ENCSR000BRS.NR2F2.K-562 151 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 85 bp overlap
NR2F6 1 dataset
ChIP K-562 ENCSR707QWA.NR2F6.K-562 188 bp overlap
NRIP1 1 dataset
ChIP MCF-7 ERP005838.NRIP1.MCF-7 193 bp overlap
NUTM1 1 dataset
ChIP NMC24335 GSE96775.NUTM1.NMC24335 344 bp overlap
Nkx3-2 1 dataset
Motif DE_12h DE_12h-Nkx3-2_MA0122.4 10 bp overlap
PAX5 1 dataset
ChIP NALM-6 GSE126300.PAX5.NALM-6 356 bp overlap
PHOX2B 1 dataset
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 256 bp overlap
POLR2A 2 datasets
ChIP GM12892 ENCFF506PGQ 392 bp overlap
ChIP neural cell ENCFF604SPB 323 bp overlap
POU2F2 1 dataset
ChIP GM12878 ENCFF207RKY 183 bp overlap
POU5F1 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR362VCG.POU5F1.neuron_bipolar_doxy_4d 177 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 118 bp overlap
Prdm4 1 dataset
Motif DE_12h DE_12h-Prdm4_MA1647.3 11 bp overlap
RCOR1 3 datasets
ChIP K-562 ENCSR000EGC.RCOR1.K-562 161 bp overlap
ChIP K562 ENCFF216EEJ 251 bp overlap
ChIP K562 ENCFF721RTS 286 bp overlap
RUNX1 1 dataset
ChIP NALM-6 GSE126300.RUNX1.NALM-6 312 bp overlap
SMARCA4 3 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 297 bp overlap
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 260 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 221 bp overlap
STAT3 7 datasets
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 352 bp overlap
ChIP T-47D_JC4741 GSE126004.STAT3.T-47D_JC4741 198 bp overlap
ChIP T-47D_JC4753 GSE126004.STAT3.T-47D_JC4753 223 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 269 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 327 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 265 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 314 bp overlap
TAL1 1 dataset
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 142 bp overlap
TBP 1 dataset
ChIP K-562 GSE55306.TBP.K-562 175 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 284 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 285 bp overlap
TCF12 3 datasets
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 178 bp overlap
ChIP K-562 ENCSR744WOO.TCF12.K-562 240 bp overlap
ChIP K562 ENCFF931DJY 281 bp overlap
TCF3 1 dataset
ChIP GM12878 ENCSR000BQT.TCF3.GM12878 131 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 277 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 240 bp overlap
TFAP4::ETV1 1 dataset
Motif DE_12h DE_12h-TFAP4ETV1_MA1966.2 13 bp overlap
TFAP4::FLI1 1 dataset
Motif DE_12h DE_12h-TFAP4FLI1_MA1967.2 14 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 294 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 294 bp overlap
YBX1 1 dataset
ChIP GM12878 ENCSR205SKQ.YBX1.GM12878 234 bp overlap
ZEB1 2 datasets
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 116 bp overlap
ZIM3 1 dataset
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
ZMYM3 1 dataset
ChIP GM12878 GSE97661.ZMYM3.GM12878 328 bp overlap
ZNF217 1 dataset
ChIP GM12878 ENCFF978IGL 161 bp overlap
ZNF35 1 dataset
Motif DE_12h DE_12h-ZNF35_MA2333.1 7 bp overlap
ZNF684 1 dataset
Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap
ZNF708 1 dataset
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 197 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
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