chr12 : 58,857,026 58,862,237
5,211 bp 106 TFs 0 linked genes
This 5.2 kb open chromatin element has no linked target genes and is bound by 106 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:58,852,026 – 58,867,237
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
106 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP GSE80256.AR.LNCaP 259 bp overlap
BATF 1 dataset
ChIP GM12878 ENCFF954REE 231 bp overlap
BCL11A 1 dataset
ChIP H1 ENCFF836SSR 177 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 218 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 247 bp overlap
CDK8 4 datasets
ChIP monocyte_IFNg GSE120943.CDK8.monocyte_IFNg 211 bp overlap
ChIP monocyte_IFNg-LPS GSE120943.CDK8.monocyte_IFNg-LPS 234 bp overlap
ChIP monocyte_LPS GSE120943.CDK8.monocyte_LPS 204 bp overlap
ChIP monocyte_resting GSE120943.CDK8.monocyte_resting 112 bp overlap
CEBPB 4 datasets
ChIP HeLa-S3 ENCFF722WEG 265 bp overlap
ChIP monocyte GSE98367.CEBPB.monocyte 265 bp overlap
ChIP monocyte_IFNg-LPS GSE120943.CEBPB.monocyte_IFNg-LPS 267 bp overlap
ChIP monocyte_INFg GSE98367.CEBPB.monocyte_INFg 190 bp overlap
CHD8 3 datasets
ChIP T-47D_ETOH_45 GSE62428.CHD8.T-47D_ETOH_45 196 bp overlap
ChIP T-47D_ETOH_5 GSE62428.CHD8.T-47D_ETOH_5 259 bp overlap
ChIP T-47D_R5020_45 GSE62428.CHD8.T-47D_R5020_45 201 bp overlap
CREB1 4 datasets
ChIP GM23338 ENCFF432ZEW 305 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 214 bp overlap
ChIP H1 ENCFF955PMP 321 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 199 bp overlap
CREBBP_M768 2 datasets
ChIP NCI-H3396_E2 GSE32349.CREBBP_M768.NCI-H3396_E2 185 bp overlap
ChIP NCI-H3396_ETOH GSE32349.CREBBP_M768.NCI-H3396_ETOH 189 bp overlap
CTCF 21 datasets
Motif ES_0h ES_0h-CTCF_MA1929.2 31 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP GM23338 ENCFF832KWE 217 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H9 ENCFF152GTF 138 bp overlap
ChIP HFFc6 ENCFF005CJI 91 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 101 bp overlap
ChIP HepG2 ENCFF127KUP 231 bp overlap
ChIP HepG2 ENCFF757EKU 351 bp overlap
ChIP IMR-90_Ctrl GSE125639.CTCF.IMR-90_Ctrl 333 bp overlap
ChIP IMR-90_siRNA GSE125639.CTCF.IMR-90_siRNA 305 bp overlap
ChIP KMS-11 ENCFF853JKX 267 bp overlap
ChIP LNCaP_siRNA GSE125639.CTCF.LNCaP_siRNA 217 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCFF844STM 191 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 304 bp overlap
ChIP chondrocyte ENCFF134ORZ 119 bp overlap
ChIP endodermal cell ENCFF471YCZ 167 bp overlap
ChIP endothelial cell ENCFF663LIE 196 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 123 bp overlap
ChIP neural crest cell ENCFF182LWK 56 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 175 bp overlap
Cebpa 4 datasets
ChIP BLaER1 ENCFF262VBH 251 bp overlap
ChIP BLaER1 ENCFF274GAT 359 bp overlap
ChIP BLaER1 ENCFF798NMV 251 bp overlap
ChIP BLaER1 ENCFF844FIP 251 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 233 bp overlap
ERF 2 datasets
ChIP HAEC_TNFa_4h GSE89970.ERF.HAEC_TNFa_4h 173 bp overlap
ChIP HAEC_TNFa_4h GSE89970.ERF.HAEC_TNFa_4h 325 bp overlap
ERG 1 dataset
ChIP HAEC GSE89970.ERG.HAEC 144 bp overlap
ESR1 1 dataset
ChIP VCaP_E2 GSE43985.ESR1.VCaP_E2 365 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 406 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 136 bp overlap
GATA6 1 dataset
ChIP DE_D2 S55-DE-d2-GATA6-exp2 247 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 208 bp overlap
GLIS2 2 datasets
ChIP HEK293 ENCFF446EIF 511 bp overlap
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 432 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 732 bp overlap
HNF1B 1 dataset
ChIP HepG2 ENCFF928THX 505 bp overlap
HNF4A 5 datasets
ChIP HepG2 ENCFF146SSF 361 bp overlap
ChIP IM95 GSE114018.HNF4A.IM95 180 bp overlap
ChIP liver ENCFF354NRH 405 bp overlap
ChIP liver ENCFF449HPV 290 bp overlap
ChIP liver ENCFF449HPV 441 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 436 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 293 bp overlap
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 197 bp overlap
JUNB 1 dataset
ChIP HAEC GSE89970.JUNB.HAEC 381 bp overlap
KLF14 1 dataset
Motif ES_0h ES_0h-KLF14_MA0740.2 9 bp overlap
KLF16 1 dataset
Motif ES_0h ES_0h-KLF16_MA0741.1 11 bp overlap
KLF4 2 datasets
ChIP WA09 GSE105028.KLF4.WA09 189 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 288 bp overlap
KLF5 1 dataset
Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap
MAF 2 datasets
ChIP monocyte GSE98367.MAF.monocyte 267 bp overlap
ChIP monocyte_INFg GSE98367.MAF.monocyte_INFg 258 bp overlap
MAFK 2 datasets
ChIP A549 ENCFF371EPR 381 bp overlap
ChIP HepG2 ENCFF743ZOF 241 bp overlap
MAZ 1 dataset
Motif ES_0h ES_0h-MAZ_MA1522.2 8 bp overlap
MEIS1 1 dataset
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MYB 1 dataset
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
NANOG 9 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 154 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 426 bp overlap
ChIP LNCaP_pNanog1_Dox GSE74799.NANOG.LNCaP_pNanog1_Dox 153 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 146 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 189 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 271 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 262 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 245 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_G GSE118494.NCAPH2.IMR-90_FLAG_G 335 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 155 bp overlap
NFE2 1 dataset
ChIP erythroid GSE125753.NFE2.erythroid 117 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 237 bp overlap
NME2 1 dataset
ChIP A-549_IND GSE40300.NME2.A-549_IND 78 bp overlap
OSR1 1 dataset
Motif ES_0h ES_0h-OSR1_MA1542.2 8 bp overlap
OSR2 1 dataset
Motif ES_0h ES_0h-OSR2_MA1646.2 8 bp overlap
PDX1 2 datasets
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 157 bp overlap
ChIP islet ERP001456.PDX1.islet 159 bp overlap
PLAG1 2 datasets
Motif DE_12h DE_12h-PLAG1_MA0163.1 14 bp overlap
Motif ES_0h ES_0h-PLAG1_MA0163.1 14 bp overlap
POLR2A 4 datasets
ChIP GM23338 ENCFF450WCS 155 bp overlap
ChIP H1 ENCFF833NJP 411 bp overlap
ChIP body of pancreas ENCFF727UBE 437 bp overlap
ChIP body of pancreas ENCFF727UBE 437 bp overlap
POU5F1 8 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 324 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 554 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 697 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 208 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 411 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 449 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 309 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 622 bp overlap
PRDM14 5 datasets
ChIP NCCIT GSE71675.PRDM14.NCCIT 452 bp overlap
ChIP hESC GSE138674.PRDM14.hESC 472 bp overlap
ChIP hESC GSE22767.PRDM14.hESC 360 bp overlap
ChIP primordial-germ-cell-like-cell GSE138674.PRDM14.primordial-germ-cell-like-cell 158 bp overlap
ChIP primordial-germ-cell-like-cell GSE138674.PRDM14.primordial-germ-cell-like-cell 739 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 401 bp overlap
PROX1 1 dataset
ChIP HepG2 ENCFF016ZJS 481 bp overlap
Prdm14 1 dataset
Motif ES_0h ES_0h-Prdm14_MA1998.2 8 bp overlap
RAD21 1 dataset
ChIP H1 ENCFF698EWO 241 bp overlap
RARA 1 dataset
ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 189 bp overlap
RBPJ 1 dataset
ChIP NHEK GSE29498.RBPJ.NHEK 118 bp overlap
RNF2 3 datasets
ChIP WA01 GSE104690.RNF2.WA01 223 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 332 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 260 bp overlap
RORB 1 dataset
Motif DE_12h DE_12h-RORB_MA1150.2 10 bp overlap
RORC 1 dataset
Motif DE_12h DE_12h-RORC_MA1151.2 10 bp overlap
RXR 1 dataset
ChIP macrophage ERP009021.RXR.macrophage 176 bp overlap
RXRA 1 dataset
ChIP WA01 ENCSR000BJW.RXRA.WA01 124 bp overlap
Runx1 1 dataset
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 521 bp overlap
SMAD2-3 1 dataset
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 349 bp overlap
SMARCA4 4 datasets
ChIP NGP GSE134626.SMARCA4.NGP 162 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 132 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 266 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 242 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 170 bp overlap
SMARCC1 3 datasets
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 174 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 228 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 242 bp overlap
SMC1 1 dataset
ChIP monocyte_IFNg-LPS GSE120943.SMC1.monocyte_IFNg-LPS 240 bp overlap
SMC1A 2 datasets
ChIP Hep-G2 GSE76893.SMC1A.Hep-G2 188 bp overlap
ChIP monocyte_INFg GSE98367.SMC1A.monocyte_INFg 249 bp overlap
SND1 1 dataset
ChIP NHEK GSE29498.SND1.NHEK 220 bp overlap
SOX17_M 2 datasets
ChIP DE_D2 DED2-SOX17-M_Batch_II 253 bp overlap
ChIP DE_D2 DED2-SOX17-M_Batch_II 234 bp overlap
SOX2 3 datasets
ChIP H9 GSE46837.SOX2.H9 156 bp overlap
ChIP hESC GSE18292.SOX2.hESC 95 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 353 bp overlap
SP1 1 dataset
ChIP liver ENCFF769YSM 511 bp overlap
SP3 1 dataset
Motif ES_0h ES_0h-SP3_MA0746.3 11 bp overlap
SP4 1 dataset
Motif ES_0h ES_0h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
STAT3 5 datasets
ChIP monocyte_IFNg GSE120943.STAT3.monocyte_IFNg 273 bp overlap
ChIP monocyte_IFNg-LPS GSE120943.STAT3.monocyte_IFNg-LPS 265 bp overlap
ChIP monocyte_IL10 GSE120943.STAT3.monocyte_IL10 291 bp overlap
ChIP monocyte_LPS GSE120943.STAT3.monocyte_LPS 257 bp overlap
ChIP monocyte_resting GSE120943.STAT3.monocyte_resting 240 bp overlap
SUPT5H 1 dataset
ChIP HeLa GSE125534.SUPT5H.HeLa 313 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 257 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 178 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 413 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 213 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 213 bp overlap
TERF1 1 dataset
ChIP LCL GSE55053.TERF1.LCL 280 bp overlap
TFAP2B 1 dataset
Motif ES_0h ES_0h-TFAP2B_MA0813.1 13 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 738 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 473 bp overlap
TP53 3 datasets
ChIP HCT-116_DMSO_KOATF3 GSE74355.TP53.HCT-116_DMSO_KOATF3 296 bp overlap
ChIP IMR-90_SENES_SHLUC GSE42728.TP53.IMR-90_SENES_SHLUC 201 bp overlap
ChIP IMR-90_SENES_SHP53 GSE42728.TP53.IMR-90_SENES_SHP53 121 bp overlap
TP63 1 dataset
ChIP JHU-029 GSE88859.TP63.JHU-029 181 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 270 bp overlap
Yy1 1 dataset
Motif DE_12h DE_12h-Yy1_MA0095.4 8 bp overlap
ZBTB33 1 dataset
ChIP HepG2 ENCFF778UKV 337 bp overlap
ZFP14 1 dataset
Motif ES_0h ES_0h-ZFP14_MA1972.1 15 bp overlap
ZNF135 1 dataset
Motif ES_0h ES_0h-ZNF135_MA1587.1 14 bp overlap
ZNF148 1 dataset
Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF366 3 datasets
ChIP HEK293 ENCFF799ATK 329 bp overlap
ChIP HEK293 ENCFF799ATK 551 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 390 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 124 bp overlap
ZNF454 1 dataset
Motif ES_0h ES_0h-ZNF454_MA1712.2 17 bp overlap
ZNF596 2 datasets
ChIP HEK293 ENCFF854MGB 369 bp overlap
ChIP HEK293 ENCSR344SBD.ZNF596.HEK293 364 bp overlap
ZNF708 1 dataset
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
ZNF777 1 dataset
ChIP HEK293 ENCFF569SYP 371 bp overlap
ZSCAN5C 2 datasets
ChIP HEK293 ENCFF343DTU 357 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 277 bp overlap
Zfx 1 dataset
Motif ES_0h ES_0h-Zfx_MA0146.3 10 bp overlap