chr1 : 205,455,490 205,456,122
632 bp 94 TFs 4 linked genes
This 632 bp open chromatin element is linked to 4 target genes and is bound by 94 transcription factors.
Linked Genes
4 genes
Distance
Gene Expression Dist. to TSS Distance Link type
LEMD1-DT at TSS At TSS Proximity
BLACAT1 at TSS At TSS Proximity
LEMD1 5.6 kb Proximal Proximity
MIR135B 7.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:205,450,490 – 205,461,122
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
94 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP MCF-7 GSE144036.AFF4.MCF-7 81 bp overlap
AR 3 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 150 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 291 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 55 bp overlap
ARNTL 1 dataset
ChIP NSC_hNP1 GSE134972.ARNTL.NSC_hNP1 203 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 325 bp overlap
ChIP H1 ENCFF399KAM 285 bp overlap
ATF2 2 datasets
ChIP WA01 ENCSR000BQU.ATF2.WA01 152 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 183 bp overlap
BCL11A 1 dataset
ChIP MCF-10A ERP003925.BCL11A.MCF-10A 228 bp overlap
BCOR 1 dataset
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 421 bp overlap
BRD4 6 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 209 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 265 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 196 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 145 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 268 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 289 bp overlap
CBX2 3 datasets
ChIP HepG2 ENCFF838BNI 61 bp overlap
ChIP K-562 ENCSR000ATU.CBX2.K-562 260 bp overlap
ChIP K-562 ENCSR000ATU.CBX2.K-562 89 bp overlap
CBX7 1 dataset
ChIP hESC GSE133412.CBX7.hESC 219 bp overlap
CBX8 2 datasets
ChIP A-549 ENCSR616MOB.CBX8.A-549 92 bp overlap
ChIP K-562 ENCSR000ATW.CBX8.K-562 267 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 298 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 115 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 547 bp overlap
CTCF 5 datasets
ChIP BC-3 GSE135740.CTCF.BC-3 162 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 235 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 126 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 88 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 263 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF031ISE 419 bp overlap
ChIP BLaER1 ENCFF274GAT 271 bp overlap
ChIP BLaER1 ENCFF335XTP 149 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 120 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 416 bp overlap
EGR1 1 dataset
ChIP A-375 GSE116190.EGR1.A-375 272 bp overlap
EP300 1 dataset
ChIP neural ENCSR843ZUP.EP300.neural 245 bp overlap
ESR1 2 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 241 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 183 bp overlap
ETS1 3 datasets
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 632 bp overlap
ChIP cardiomyocyte_D5 GSE129986.ETS1.cardiomyocyte_D5 148 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 118 bp overlap
EZH2 43 datasets
ChIP A673 ENCFF790MVL 272 bp overlap
ChIP A673 ENCFF955JRZ 259 bp overlap
ChIP B cell ENCFF803EMO 295 bp overlap
ChIP GM12878 ENCFF635TDF 269 bp overlap
ChIP GM12878 ENCFF635TDF 70 bp overlap
ChIP GM23248 ENCFF404ZHM 145 bp overlap
ChIP GM23248 ENCFF404ZHM 251 bp overlap
ChIP GM23248 ENCFF404ZHM 154 bp overlap
ChIP GM23248 ENCFF506FWX 256 bp overlap
ChIP GM23248 ENCFF506FWX 306 bp overlap
ChIP GM23248 ENCFF506FWX 106 bp overlap
ChIP GM23338 ENCSR045YHA.EZH2.GM23338 128 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 540 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 480 bp overlap
ChIP HepG2 ENCFF912EIW 262 bp overlap
ChIP Karpas-422_CPI360-D8 GSE134136.EZH2.Karpas-422_CPI360-D8 201 bp overlap
ChIP MM.1S ENCFF138BXR 228 bp overlap
ChIP MM.1S ENCFF966SYG 318 bp overlap
ChIP OCI-LY7 ENCFF395KPU 360 bp overlap
ChIP OCI-LY7 ENCFF395KPU 160 bp overlap
ChIP OCI-LY7 ENCFF434OYG 360 bp overlap
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 74 bp overlap
ChIP T-REx-293_K27WT_6h GSE118954.EZH2.T-REx-293_K27WT_6h 78 bp overlap
ChIP T-REx-293_K27WT_72h GSE118954.EZH2.T-REx-293_K27WT_72h 126 bp overlap
ChIP VCaP_ETOH GSE28950.EZH2.VCaP_ETOH 116 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 294 bp overlap
ChIP astrocyte ENCFF365JTP 632 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 479 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 632 bp overlap
ChIP fibroblast of lung ENCFF479BAW 284 bp overlap
ChIP fibroblast of lung ENCFF479BAW 605 bp overlap
ChIP fibroblast of lung ENCFF479BAW 164 bp overlap
ChIP hepatocyte ENCFF118DKH 116 bp overlap
ChIP hepatocyte ENCFF552DZB 632 bp overlap
ChIP hepatocyte ENCFF552DZB 632 bp overlap
ChIP keratinocyte ENCFF070STK 167 bp overlap
ChIP keratinocyte ENCFF070STK 85 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 182 bp overlap
ChIP myotube ENCFF857GWB 460 bp overlap
ChIP myotube ENCFF857GWB 348 bp overlap
ChIP peripheral-blood-mononuclear-cell_B-cell GSE115772.EZH2.peripheral-blood-mononuclear-cell_B-cell 58 bp overlap
ChIP peripheral-blood-mononuclear-cell_B-cell GSE115772.EZH2.peripheral-blood-mononuclear-cell_B-cell 333 bp overlap
ChIP prostate-cancer_plko GSE107780.EZH2.prostate-cancer_plko 322 bp overlap
FOXA1 1 dataset
ChIP 22Rv1_i176m_CST GSE123618.FOXA1.22Rv1_i176m_CST 200 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 234 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 170 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 153 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 222 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 226 bp overlap
HMGXB4 1 dataset
ChIP WTC11 ENCFF962POR 134 bp overlap
INO80 2 datasets
ChIP Hep-G2 GSE107730.INO80.Hep-G2 300 bp overlap
ChIP Hep-G2 GSE107730.INO80.Hep-G2 83 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 200 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 382 bp overlap
JUN 10 datasets
ChIP 786-O GSE86092.JUN.786-O 207 bp overlap
ChIP 786-O GSE86092.JUN.786-O 177 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 401 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 440 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 534 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 275 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 429 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 271 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 483 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 499 bp overlap
JUND 1 dataset
ChIP H1 ENCFF468JZD 231 bp overlap
KDM4A 1 dataset
ChIP H1 ENCFF078LED 499 bp overlap
KDM5B 2 datasets
ChIP HCC2157 GSE46055.KDM5B.HCC2157 258 bp overlap
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 130 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 260 bp overlap
KLF9 2 datasets
ChIP GBM1A GSE62211.KLF9.GBM1A 105 bp overlap
ChIP GBM1A GSE62211.KLF9.GBM1A 202 bp overlap
MYCN 1 dataset
ChIP NB-1643 GSE138295.MYCN.NB-1643 344 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 255 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 632 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 210 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 254 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 192 bp overlap
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 179 bp overlap
NFKB1 1 dataset
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 301 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 115 bp overlap
NRF1 4 datasets
ChIP HMEC-1 GSE67867.NRF1.HMEC-1 100 bp overlap
ChIP Hep-G2 ENCSR853ADA.NRF1.Hep-G2 174 bp overlap
ChIP Hep-G2 GSE97661.NRF1.Hep-G2 90 bp overlap
ChIP HepG2 ENCFF694NVY 295 bp overlap
OGG1 4 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 469 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 330 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 320 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 381 bp overlap
ONECUT1 2 datasets
ChIP H9 ERP004206.ONECUT1.H9 90 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 106 bp overlap
PCBP1 4 datasets
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 253 bp overlap
ChIP Hep-G2 ENCSR872EVQ.PCBP1.Hep-G2 237 bp overlap
ChIP K-562 ENCSR052PTN.PCBP1.K-562 220 bp overlap
ChIP K-562 GSE120104.PCBP1.K-562 187 bp overlap
PCGF2 1 dataset
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 174 bp overlap
PDX1 2 datasets
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 150 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 125 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 215 bp overlap
POU2F1 2 datasets
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 137 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 202 bp overlap
POU5F1 4 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 632 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 232 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 137 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 230 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 632 bp overlap
PRDM14 2 datasets
ChIP NCCIT GSE71675.PRDM14.NCCIT 357 bp overlap
ChIP hESC GSE22767.PRDM14.hESC 323 bp overlap
RBBP5 1 dataset
ChIP H1 ENCFF905HFL 368 bp overlap
RBM39 3 datasets
ChIP Hep-G2 GSE120104.RBM39.Hep-G2 193 bp overlap
ChIP Hep-G2 ENCSR339JTP.RBM39.Hep-G2 188 bp overlap
ChIP HepG2 ENCFF084YZE 252 bp overlap
REST 6 datasets
ChIP CD4 GSE49570.REST.CD4 152 bp overlap
ChIP GM23338 ENCFF024TCL 265 bp overlap
ChIP H1 ENCFF203SWY 142 bp overlap
ChIP colorectal-cancer_CRC121_intact GSE112555.REST.colorectal-cancer_CRC121_intact 260 bp overlap
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 232 bp overlap
ChIP neural cell ENCFF882LXX 356 bp overlap
RNF2 4 datasets
ChIP A-549 ENCSR798EGJ.RNF2.A-549 206 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 231 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 194 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 250 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 275 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 305 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 145 bp overlap
SAP30 3 datasets
ChIP H1 ENCFF149IOE 356 bp overlap
ChIP WA01 ENCSR000ATR.SAP30.WA01 196 bp overlap
ChIP WA01 ENCSR000ATR.SAP30.WA01 266 bp overlap
SIN3A 4 datasets
ChIP H1 ENCFF896IJG 108 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 581 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 122 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 278 bp overlap
SMAD2-3 5 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 632 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 632 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 248 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 51 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 387 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 446 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 258 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 249 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 462 bp overlap
SMARCA4 7 datasets
ChIP 22Rv1 GSE115615.SMARCA4.22Rv1 358 bp overlap
ChIP 22Rv1 GSE115615.SMARCA4.22Rv1 121 bp overlap
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 128 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 632 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 93 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 321 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 63 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 369 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 544 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 103 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 548 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 533 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 290 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 632 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 95 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 178 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 161 bp overlap
SP4 2 datasets
ChIP WA01 ENCSR000BQV.SP4.WA01 238 bp overlap
ChIP WA01 ENCSR000BQV.SP4.WA01 225 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 275 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 287 bp overlap
SRSF3 1 dataset
ChIP K-562 GSE120104.SRSF3.K-562 205 bp overlap
SRSF7 1 dataset
ChIP Hep-G2 GSE120104.SRSF7.Hep-G2 251 bp overlap
SS18 2 datasets
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 180 bp overlap
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 77 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 208 bp overlap
SUZ12 9 datasets
ChIP HEK293T_PCGF2fl GSE119618.SUZ12.HEK293T_PCGF2fl 232 bp overlap
ChIP HEK293T_PCGF2fl_OHT GSE119618.SUZ12.HEK293T_PCGF2fl_OHT 193 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 388 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 632 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 301 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 275 bp overlap
ChIP SYO-1_shCt GSE139053.SUZ12.SYO-1_shCt 127 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 192 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 235 bp overlap
TAF1 3 datasets
ChIP WA01 ENCSR000BHO.TAF1.WA01 228 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 306 bp overlap
ChIP neural ENCSR000BTX.TAF1.neural 555 bp overlap
TBP 2 datasets
ChIP hESC_10h GSE122298.TBP.hESC_10h 139 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 385 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 191 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 187 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 265 bp overlap
ZBTB48 1 dataset
ChIP U2OS GSE96776.ZBTB48.U2OS 469 bp overlap
ZBTB7A 2 datasets
ChIP Ishikawa ENCSR000BSZ.ZBTB7A.Ishikawa 140 bp overlap
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 111 bp overlap
ZNF319 1 dataset
ChIP K562 ENCFF561ZSB 329 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 94 bp overlap