chr11 : 71,246,399 71,246,829
430 bp 102 TFs 3 linked genes
This 430 bp open chromatin element is linked to SHANK2, DHCR7, and NADSYN1 and is bound by 102 transcription factors.
Linked Genes
3 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
SHANK2 5.7 kb Proximal Proximity
DHCR7 201.8 kb Distal Multiome
NADSYN1 206.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:71,241,399 – 71,251,829
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
102 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 127 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 430 bp overlap
ChIP H1 ENCFF399KAM 430 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 430 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 148 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 282 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 423 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 430 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 163 bp overlap
BRD4 1 dataset
ChIP hESC GSE33281.BRD4.hESC 65 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 222 bp overlap
CHD2 1 dataset
ChIP H1 ENCFF991MKH 250 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 365 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 155 bp overlap
E2F6 1 dataset
ChIP H1 ENCFF785DWK 68 bp overlap
EGR1 2 datasets
ChIP H1 ENCFF451BLH 224 bp overlap
ChIP WA01 ENCSR000BJA.EGR1.WA01 171 bp overlap
ELF2 2 datasets
Motif DE_12h DE_12h-ELF2_MA1483.3 10 bp overlap
Motif ES_0h ES_0h-ELF2_MA1483.3 10 bp overlap
ELK3 2 datasets
Motif DE_12h DE_12h-ELK3_MA0759.3 9 bp overlap
Motif ES_0h ES_0h-ELK3_MA0759.3 9 bp overlap
ELK4 2 datasets
Motif DE_12h DE_12h-ELK4_MA0076.3 9 bp overlap
Motif ES_0h ES_0h-ELK4_MA0076.3 9 bp overlap
EP300 3 datasets
ChIP H1 ENCFF927IYK 226 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 257 bp overlap
ChIP WA01 ENCSR000AUQ.EP300.WA01 168 bp overlap
ERF::FIGLA 2 datasets
Motif DE_12h DE_12h-ERFFIGLA_MA1934.2 13 bp overlap
Motif ES_0h ES_0h-ERFFIGLA_MA1934.2 13 bp overlap
ESR1 1 dataset
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 165 bp overlap
ETS1 4 datasets
ChIP GM23338 ENCFF701IZH 268 bp overlap
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 430 bp overlap
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 130 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 184 bp overlap
ETV2::FIGLA 2 datasets
Motif DE_12h DE_12h-ETV2FIGLA_MA1941.2 13 bp overlap
Motif ES_0h ES_0h-ETV2FIGLA_MA1941.2 13 bp overlap
ETV4 1 dataset
ChIP T-47D GSE129803.ETV4.T-47D 89 bp overlap
ETV5::FIGLA 2 datasets
Motif DE_12h DE_12h-ETV5FIGLA_MA1945.2 14 bp overlap
Motif ES_0h ES_0h-ETV5FIGLA_MA1945.2 14 bp overlap
EZH2 1 dataset
ChIP THP-1 GSE135024.EZH2.THP-1 197 bp overlap
FIGLA 2 datasets
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 191 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 196 bp overlap
GATA6 4 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 274 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 363 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 257 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 329 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 430 bp overlap
HDAC2 4 datasets
ChIP H1 ENCFF353UJQ 152 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 99 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 170 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 123 bp overlap
HLF 1 dataset
Motif ES_0h ES_0h-HLF_MA0043.4 9 bp overlap
HNRNPH1 2 datasets
ChIP Hep-G2 GSE120104.HNRNPH1.Hep-G2 81 bp overlap
ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 81 bp overlap
JUN 5 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 401 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 364 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 372 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 389 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 282 bp overlap
KLF5 1 dataset
Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap
MAZ 1 dataset
Motif ES_0h ES_0h-MAZ_MA1522.2 8 bp overlap
NANOG 9 datasets
ChIP GM23338 ENCFF065NZG 230 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 142 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 430 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 183 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 118 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 220 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 263 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 191 bp overlap
ChIP hESC GSE18292.NANOG.hESC 115 bp overlap
NFIL3 1 dataset
Motif ES_0h ES_0h-NFIL3_MA0025.3 9 bp overlap
NIPBL 4 datasets
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 305 bp overlap
ChIP hESC GSE64758.NIPBL.hESC 195 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 178 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 286 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 399 bp overlap
POLR2A 4 datasets
ChIP GM23338 ENCFF450WCS 430 bp overlap
ChIP H1 ENCFF566JSR 252 bp overlap
ChIP H1 ENCFF566JSR 358 bp overlap
ChIP H1 ENCFF833NJP 255 bp overlap
POU1F1 1 dataset
Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap
POU2F1 2 datasets
Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 116 bp overlap
POU2F2 1 dataset
Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap
POU2F3 1 dataset
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
POU3F1 1 dataset
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
POU3F4 1 dataset
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
POU5F1 15 datasets
ChIP BG03 GSE21614.POU5F1.BG03 163 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 264 bp overlap
Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap
ChIP GM23338 ENCFF333SNB 252 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 430 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 217 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 220 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 212 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 215 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 201 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 276 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 430 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 419 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 194 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 430 bp overlap
PRDM14 3 datasets
ChIP NCCIT GSE71675.PRDM14.NCCIT 384 bp overlap
ChIP hESC GSE22767.PRDM14.hESC 356 bp overlap
ChIP primordial-germ-cell-like-cell GSE138674.PRDM14.primordial-germ-cell-like-cell 328 bp overlap
PRDM9 1 dataset
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
RAD21 1 dataset
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 237 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 362 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 365 bp overlap
REST 2 datasets
ChIP H1 ENCFF429RUE 189 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 118 bp overlap
RREB1 2 datasets
Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap
Motif ES_0h ES_0h-RREB1_MA0073.2 19 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 174 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 352 bp overlap
SAP30 2 datasets
ChIP WA01 ENCSR000ATR.SAP30.WA01 230 bp overlap
ChIP WA01 ENCSR000ATR.SAP30.WA01 153 bp overlap
SIN3A 4 datasets
ChIP H1 ENCFF042ZSL 388 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 140 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 151 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 135 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 287 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE21614.SMAD3.BG03 205 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 184 bp overlap
SMARCA4 3 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 218 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 399 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 430 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 255 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 210 bp overlap
SMARCC1 4 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 179 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 269 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 241 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 333 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 297 bp overlap
SP1 4 datasets
Motif ES_0h ES_0h-SP1_MA0079.5 9 bp overlap
ChIP H1 ENCFF263FUH 254 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 395 bp overlap
ChIP WTC11 ENCFF688PEU 295 bp overlap
SP4 1 dataset
Motif ES_0h ES_0h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 256 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 260 bp overlap
TAF7 1 dataset
ChIP H1 ENCFF061XZZ 180 bp overlap
TBP 6 datasets
ChIP H1 ENCFF859IIO 202 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 117 bp overlap
ChIP hESC GSE122298.TBP.hESC 139 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 218 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 287 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 130 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 226 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 224 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 430 bp overlap
TEAD4 2 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 309 bp overlap
ChIP H1 ENCFF778PAX 216 bp overlap
TFAP2A 2 datasets
Motif ES_0h ES_0h-TFAP2A_MA0003.5 9 bp overlap
ChIP WA09 GSE105081.TFAP2A.WA09 181 bp overlap
TFAP2B 1 dataset
Motif ES_0h ES_0h-TFAP2B_MA0812.2 9 bp overlap
TFAP2C 1 dataset
Motif ES_0h ES_0h-TFAP2C_MA0814.3 9 bp overlap
TFAP2E 1 dataset
Motif ES_0h ES_0h-TFAP2E_MA1569.2 9 bp overlap
TFAP4::ETV1 2 datasets
Motif DE_12h DE_12h-TFAP4ETV1_MA1966.2 13 bp overlap
Motif ES_0h ES_0h-TFAP4ETV1_MA1966.2 13 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 173 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 146 bp overlap
ZBTB6 2 datasets
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
Motif ES_0h ES_0h-ZBTB6_MA1581.2 9 bp overlap
ZBTB7A 2 datasets
Motif DE_12h DE_12h-ZBTB7A_MA0750.3 9 bp overlap
Motif ES_0h ES_0h-ZBTB7A_MA0750.3 9 bp overlap
ZEB1 4 datasets
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap
ChIP RKO GSE88734.ZEB1.RKO 278 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 282 bp overlap
ZFP14 1 dataset
Motif ES_0h ES_0h-ZFP14_MA1972.1 15 bp overlap
ZNF148 1 dataset
Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 222 bp overlap
ZNF281 3 datasets
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ChIP WTC11 ENCFF551GAV 289 bp overlap
ZNF320 1 dataset
Motif ES_0h ES_0h-ZNF320_MA1976.2 20 bp overlap
ZNF324 1 dataset
Motif ES_0h ES_0h-ZNF324_MA1977.2 14 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 286 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCFF896CCA 213 bp overlap
ZNF708 1 dataset
Motif ES_0h ES_0h-ZNF708_MA1730.2 9 bp overlap