chr11 : 23,730,332 23,730,933
601 bp 118 TFs 1 linked gene
This 601 bp open chromatin element is linked to LINC02726 and is bound by 118 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC02726 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:23,725,332 – 23,735,933
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
118 transcription factors
Source
Cell type
AR 3 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 135 bp overlap
ChIP prostate-cancer_PDX_35 GSE130408.AR.prostate-cancer_PDX_35 130 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 482 bp overlap
ARNT 1 dataset
ChIP 501-mel GSE95280.ARNT.501-mel 292 bp overlap
BARHL1 1 dataset
Motif ES_0h ES_0h-BARHL1_MA0877.4 6 bp overlap
BARHL2 1 dataset
Motif ES_0h ES_0h-BARHL2_MA0635.2 6 bp overlap
BRD2 1 dataset
ChIP SUM159PT_DMSO GSE116879.BRD2.SUM159PT_DMSO 183 bp overlap
BRD4 5 datasets
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 206 bp overlap
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 153 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 267 bp overlap
ChIP SUM159PT_shMYC_DMSO_48h GSE87418.BRD4.SUM159PT_shMYC_DMSO_48h 253 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 157 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 337 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 214 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 409 bp overlap
CEBPA 1 dataset
ChIP T-47D_progesterone GSE132649.CEBPA.T-47D_progesterone 133 bp overlap
CHD8 2 datasets
ChIP T-47D GSE62428.CHD8.T-47D 160 bp overlap
ChIP T-47D_ETOH_45 GSE62428.CHD8.T-47D_ETOH_45 161 bp overlap
CSNK2A1 1 dataset
ChIP LNCaP_DHT GSE58607.CSNK2A1.LNCaP_DHT 178 bp overlap
CTCF 6 datasets
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 455 bp overlap
ChIP T-47D_NaCl-triptolide GSE111923.CTCF.T-47D_NaCl-triptolide 516 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 378 bp overlap
ChIP T-47D_triptolide GSE111923.CTCF.T-47D_triptolide 342 bp overlap
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 122 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 133 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 353 bp overlap
ChIP BLaER1 ENCFF335XTP 251 bp overlap
E2F1 1 dataset
ChIP LNCaP_shRB GSE94958.E2F1.LNCaP_shRB 404 bp overlap
E2F7 1 dataset
Motif ES_0h ES_0h-E2F7_MA0758.1 14 bp overlap
EGR1 3 datasets
Motif DE_12h DE_12h-EGR1_MA0162.5 10 bp overlap
ChIP fibroblast_DOX-24h GSE134924.EGR1.fibroblast_DOX-24h 467 bp overlap
ChIP fibroblast_DOX-CLOB-24h GSE134924.EGR1.fibroblast_DOX-CLOB-24h 295 bp overlap
EGR3 1 dataset
Motif DE_12h DE_12h-EGR3_MA0732.2 11 bp overlap
EHF 1 dataset
Motif ES_0h ES_0h-EHF_MA0598.4 9 bp overlap
ELF1 2 datasets
Motif ES_0h ES_0h-ELF1_MA0473.4 9 bp overlap
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 136 bp overlap
ELF3 1 dataset
Motif ES_0h ES_0h-ELF3_MA0640.3 9 bp overlap
ELK4 1 dataset
Motif ES_0h ES_0h-ELK4_MA0076.3 9 bp overlap
ERG 3 datasets
ChIP AMLPZ12 GSE23730.ERG.AMLPZ12 203 bp overlap
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 254 bp overlap
ChIP MCF-7 GSE23730.ERG.MCF-7 213 bp overlap
ESR1 13 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 440 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 453 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 423 bp overlap
ChIP MCF-7_Veh GSE93510.ESR1.MCF-7_Veh 301 bp overlap
ChIP MCF-7_estradiol_45min_ChIP-and-reChIP GSE99626.ESR1.MCF-7_estradiol_45min_ChIP-and-reChIP 280 bp overlap
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 345 bp overlap
ChIP T-47D_D538G GSE148277.ESR1.T-47D_D538G 418 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 601 bp overlap
ChIP T-47D_JC4732 GSE126004.ESR1.T-47D_JC4732 189 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 574 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 601 bp overlap
ChIP T-47D_siCont-IL6 GSE126004.ESR1.T-47D_siCont-IL6 204 bp overlap
ChIP T-47D_siFOXA1-IL6 GSE126004.ESR1.T-47D_siFOXA1-IL6 192 bp overlap
ETS1 3 datasets
ChIP HUVEC-C_12h GSE93030.ETS1.HUVEC-C_12h 212 bp overlap
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 217 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.ETS1.HUVEC-C_VEGF_12h 212 bp overlap
ETV1 2 datasets
Motif ES_0h ES_0h-ETV1_MA0761.3 9 bp overlap
Motif ES_0h ES_0h-ETV1_MA0761.3 9 bp overlap
ETV4 1 dataset
ChIP T-47D GSE129803.ETV4.T-47D 271 bp overlap
ETV6 1 dataset
Motif ES_0h ES_0h-ETV6_MA0645.2 9 bp overlap
ETV7 1 dataset
Motif ES_0h ES_0h-ETV7_MA1708.2 9 bp overlap
Elf5 1 dataset
Motif ES_0h ES_0h-Elf5_MA0136.4 8 bp overlap
Erg 2 datasets
Motif ES_0h ES_0h-Erg_MA0474.4 10 bp overlap
Motif ES_0h ES_0h-Erg_MA0474.4 10 bp overlap
FOXA1 17 datasets
ChIP LNCaP_GSK-4H GSE114266.FOXA1.LNCaP_GSK-4H 192 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 52 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 144 bp overlap
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 172 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 242 bp overlap
ChIP T-47D_JC4742 GSE126004.FOXA1.T-47D_JC4742 245 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 236 bp overlap
ChIP T-47D_JC4744 GSE126004.FOXA1.T-47D_JC4744 344 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 267 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 272 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 393 bp overlap
ChIP T-47D_flp-ctrl GSE99479.FOXA1.T-47D_flp-ctrl 146 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 198 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 113 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 147 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 161 bp overlap
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 601 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 366 bp overlap
FOXC2 1 dataset
Motif ES_0h ES_0h-FOXC2_MA0846.2 11 bp overlap
FOXE1 1 dataset
Motif ES_0h ES_0h-FOXE1_MA1487.3 12 bp overlap
GABPA 3 datasets
Motif ES_0h ES_0h-GABPA_MA0062.4 10 bp overlap
ChIP K-562 ENCSR290MUH.GABPA.K-562 484 bp overlap
ChIP K562 ENCFF139LXS 255 bp overlap
GABPB1 2 datasets
ChIP K-562 ENCSR138YYY.GABPB1.K-562 156 bp overlap
ChIP K562 ENCFF015GDS 264 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 182 bp overlap
GRHL2 1 dataset
ChIP T-47D GSE99680.GRHL2.T-47D 281 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 501 bp overlap
IKZF1 1 dataset
Motif ES_0h ES_0h-IKZF1_MA1508.2 8 bp overlap
IKZF2 1 dataset
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif ES_0h ES_0h-Ikzf3_MA1992.2 9 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 195 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 349 bp overlap
KDM5B 1 dataset
ChIP T-47D GSE46055.KDM5B.T-47D 322 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 276 bp overlap
KLF1 1 dataset
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
KLF10 1 dataset
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
KLF11 1 dataset
Motif DE_12h DE_12h-KLF11_MA1512.2 10 bp overlap
KLF12 2 datasets
Motif DE_12h DE_12h-KLF12_MA0742.2 9 bp overlap
Motif DE_12h DE_12h-KLF12_MA0742.2 9 bp overlap
KLF14 1 dataset
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
KLF15 1 dataset
Motif DE_12h DE_12h-KLF15_MA1513.2 8 bp overlap
KLF2 1 dataset
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
KLF4 1 dataset
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
KLF5 1 dataset
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
KLF7 1 dataset
Motif DE_12h DE_12h-KLF7_MA1959.2 8 bp overlap
LMO2 1 dataset
ChIP Kasumi-1_SICTR GSE60130.LMO2.Kasumi-1_SICTR 207 bp overlap
MBD2 1 dataset
ChIP HeLa GSE41006.MBD2.HeLa 106 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
NCAPH2 1 dataset
ChIP HEK293 GSE97540.NCAPH2.HEK293 286 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 152 bp overlap
NFIA 1 dataset
Motif ES_0h ES_0h-NFIA_MA0670.2 6 bp overlap
NFIX 1 dataset
Motif ES_0h ES_0h-NFIX_MA0671.2 6 bp overlap
NR1D1 1 dataset
Motif DE_12h DE_12h-NR1D1_MA1531.2 14 bp overlap
NR1D2 1 dataset
Motif DE_12h DE_12h-NR1D2_MA1532.2 15 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 318 bp overlap
OGG1 4 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 479 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 405 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 423 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 416 bp overlap
OLIG2 2 datasets
ChIP brain-prefrontal-cortex_2017014 GSE129039.OLIG2.brain-prefrontal-cortex_2017014 358 bp overlap
ChIP brain-prefrontal-cortex_2018006 GSE129039.OLIG2.brain-prefrontal-cortex_2018006 273 bp overlap
PATZ1 1 dataset
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
PGR 1 dataset
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 339 bp overlap
PHF8 1 dataset
ChIP K-562 ENCSR000AQH.PHF8.K-562 135 bp overlap
POU2F1 2 datasets
ChIP T-47D GSE148277.POU2F1.T-47D 290 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 601 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 115 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 455 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
REST 1 dataset
Motif DE_12h DE_12h-REST_MA0138.3 20 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 477 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 354 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.RUNX1T1.Kasumi-1_CEBPA-ER_E2 333 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 214 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 336 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 164 bp overlap
SP1 1 dataset
ChIP A-375_DMSO GSE68044.SP1.A-375_DMSO 145 bp overlap
SP2 2 datasets
Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap
Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap
SP3 1 dataset
Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SP9 1 dataset
Motif DE_12h DE_12h-SP9_MA1564.2 10 bp overlap
SPI1 1 dataset
ChIP macrophage_IFNG GSE47188.SPI1.macrophage_IFNG 308 bp overlap
SPIB 1 dataset
Motif ES_0h ES_0h-SPIB_MA0081.3 13 bp overlap
SREBP2 1 dataset
ChIP HCC70 GSE126380.SREBP2.HCC70 289 bp overlap
STAT3 9 datasets
ChIP T-47D_JC4735 GSE126004.STAT3.T-47D_JC4735 195 bp overlap
ChIP T-47D_JC4739 GSE126004.STAT3.T-47D_JC4739 216 bp overlap
ChIP T-47D_JC4751 GSE126004.STAT3.T-47D_JC4751 205 bp overlap
ChIP T-47D_JC4753 GSE126004.STAT3.T-47D_JC4753 233 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 464 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 376 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 500 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 287 bp overlap
ChIP WA01 ERP004237.STAT3.WA01 309 bp overlap
TCF7 1 dataset
ChIP breast-organoid_BRCA2-mut GSE113909.TCF7.breast-organoid_BRCA2-mut 392 bp overlap
TEAD4 2 datasets
ChIP T-47D_E2 GSE125594.TEAD4.T-47D_E2 221 bp overlap
ChIP T-47D_Veh GSE125594.TEAD4.T-47D_Veh 205 bp overlap
TFAP2A 1 dataset
Motif DE_12h DE_12h-TFAP2A_MA0872.1 13 bp overlap
TFAP2B 1 dataset
Motif DE_12h DE_12h-TFAP2B_MA0813.1 13 bp overlap
TFAP2C 1 dataset
Motif DE_12h DE_12h-TFAP2C_MA0815.1 13 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 362 bp overlap
TP63 2 datasets
ChIP breast-organoid GSE113909.TP63.breast-organoid 163 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 148 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 202 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 371 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 448 bp overlap
YY1AP1 1 dataset
ChIP T-47D_E2 GSE125594.YY1AP1.T-47D_E2 129 bp overlap
ZBED4 1 dataset
Motif DE_12h DE_12h-ZBED4_MA2328.1 10 bp overlap
ZBTB11 1 dataset
Motif ES_0h ES_0h-ZBTB11_MA2329.1 9 bp overlap
ZBTB26 1 dataset
Motif DE_12h DE_12h-ZBTB26_MA1579.2 8 bp overlap
ZBTB7A 1 dataset
Motif ES_0h ES_0h-ZBTB7A_MA0750.3 9 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF175 2 datasets
Motif ES_0h ES_0h-ZNF175_MA2332.1 9 bp overlap
Motif ES_0h ES_0h-ZNF175_MA2332.1 9 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF549 1 dataset
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
ZNF582 1 dataset
Motif ES_0h ES_0h-ZNF582_MA1983.2 19 bp overlap