chr10 : 99,531,091 99,531,503
412 bp 112 TFs 2 linked genes
This 412 bp open chromatin element is linked to NKX2-3 and LINC01475 and is bound by 112 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
NKX2-3 1.4 kb Proximal Proximity
LINC01475 3.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr10:99,526,091 – 99,536,503
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
112 transcription factors
Source
Cell type
AFF1 1 dataset
ChIP SEM_CX4945 GSE90762.AFF1.SEM_CX4945 144 bp overlap
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 251 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 256 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 171 bp overlap
Arnt 1 dataset
Motif DE_24h DE_24h-Arnt_MA0004.1 6 bp overlap
BCOR 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 250 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 276 bp overlap
BRD4 5 datasets
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 151 bp overlap
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 412 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 412 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 159 bp overlap
CBX2 2 datasets
ChIP HEK293T GSE34774.CBX2.HEK293T 265 bp overlap
ChIP K-562 ENCSR000ATU.CBX2.K-562 229 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 326 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231 GSE112444.CDKN1B.MDA-MB-231 186 bp overlap
CHD1 2 datasets
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 364 bp overlap
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 336 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 323 bp overlap
CTCFL 1 dataset
ChIP K-562 GSE70764.CTCFL.K-562 146 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 338 bp overlap
E2F6 4 datasets
ChIP H1 ENCFF785DWK 230 bp overlap
ChIP H1 ENCFF785DWK 319 bp overlap
ChIP K-562 ENCSR000BLI.E2F6.K-562 103 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 412 bp overlap
EP300 1 dataset
ChIP sigmoid colon ENCFF524QSR 168 bp overlap
EPAS1 1 dataset
Motif DE_24h DE_24h-EPAS1_MA2325.1 9 bp overlap
ERG 1 dataset
ChIP SEM GSE117864.ERG.SEM 412 bp overlap
ESR1 2 datasets
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 412 bp overlap
ChIP MCF-7_Veh GSE117941.ESR1.MCF-7_Veh 215 bp overlap
EZH2 21 datasets
ChIP A-673 ENCSR179SAO.EZH2.A-673 85 bp overlap
ChIP B cell ENCFF803EMO 402 bp overlap
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 412 bp overlap
ChIP GM23248 ENCFF404ZHM 295 bp overlap
ChIP GM23338 ENCFF613YON 286 bp overlap
ChIP H1 ENCFF232NZA 412 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 302 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 412 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 103 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 303 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 324 bp overlap
ChIP astrocyte ENCFF365JTP 412 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 239 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 412 bp overlap
ChIP fibroblast of lung ENCFF479BAW 335 bp overlap
ChIP fibroblast of lung ENCFF479BAW 390 bp overlap
ChIP hepatocyte ENCFF552DZB 412 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 59 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 285 bp overlap
ChIP neural progenitor cell ENCFF018MKA 412 bp overlap
ChIP neural progenitor cell ENCFF472NFV 412 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin-Herceptin-ICI GSE101407.FOXA1.breast-cancer_heregulin-Herceptin-ICI 318 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 275 bp overlap
FOXP1 2 datasets
ChIP WTC11 ENCFF338WGC 368 bp overlap
ChIP WTC11 ENCFF338WGC 368 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 188 bp overlap
HCFC1R1 1 dataset
ChIP cartilage GSE100311.HCFC1R1.cartilage 400 bp overlap
HES2 1 dataset
Motif DE_24h DE_24h-HES2_MA0616.3 9 bp overlap
HES5 1 dataset
Motif DE_24h DE_24h-HES5_MA0821.2 10 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 403 bp overlap
HEY1 1 dataset
Motif DE_24h DE_24h-HEY1_MA0823.1 10 bp overlap
HEY2 1 dataset
Motif DE_24h DE_24h-HEY2_MA0649.2 9 bp overlap
HIF1A 2 datasets
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 292 bp overlap
Motif DE_24h DE_24h-HIF1A_MA1106.2 6 bp overlap
HINFP 1 dataset
Motif DE_24h DE_24h-HINFP_MA0131.3 8 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 393 bp overlap
JARID2 1 dataset
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 404 bp overlap
JUN 3 datasets
ChIP ESC S24-ESC-d0-JUN-exp1 307 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 412 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 284 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 107 bp overlap
KDM4A 4 datasets
ChIP H1 ENCFF078LED 206 bp overlap
ChIP H1 ENCFF078LED 412 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 399 bp overlap
ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 186 bp overlap
KLF1 1 dataset
ChIP erythroid_R3R4 GSE43625.KLF1.erythroid_R3R4 93 bp overlap
KLF12 1 dataset
Motif DE_24h DE_24h-KLF12_MA0742.2 9 bp overlap
KMT2A 3 datasets
ChIP MOLM-13_DMSO-D3-180110 GSE127507.KMT2A.MOLM-13_DMSO-D3-180110 275 bp overlap
ChIP OCI-AML-3_VTP GSE129636.KMT2A.OCI-AML-3_VTP 412 bp overlap
ChIP SEM GSE83671.KMT2A.SEM 410 bp overlap
KMT2B 1 dataset
ChIP AML_OG86 GSE112074.KMT2B.AML_OG86 146 bp overlap
MAX 3 datasets
Motif DE_24h DE_24h-MAX_MA0058.4 6 bp overlap
ChIP H1 ENCFF914VQY 229 bp overlap
ChIP WTC11 ENCFF223QFY 397 bp overlap
MAX::MYC 1 dataset
Motif DE_24h DE_24h-MAXMYC_MA0059.2 10 bp overlap
MED 1 dataset
ChIP SEM GSE83671.MED.SEM 52 bp overlap
MNT 1 dataset
Motif DE_24h DE_24h-MNT_MA0825.2 6 bp overlap
MYC 4 datasets
ChIP CD34 GSE85488.MYC.CD34 169 bp overlap
Motif DE_24h DE_24h-MYC_MA0147.4 8 bp overlap
ChIP GEN2-2 GSE70275.MYC.GEN2-2 155 bp overlap
ChIP WA01 ENCSR000EBY.MYC.WA01 164 bp overlap
MYCN 7 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 388 bp overlap
Motif DE_24h DE_24h-MYCN_MA0104.5 8 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 171 bp overlap
ChIP Kelly GSE94782.MYCN.Kelly 107 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 196 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 371 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 203 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 364 bp overlap
Mlxip 1 dataset
Motif DE_24h DE_24h-Mlxip_MA0622.2 6 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 412 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 145 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 262 bp overlap
NCAPH2 1 dataset
ChIP HEK293 GSE97540.NCAPH2.HEK293 220 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 120 bp overlap
NFKB1 1 dataset
ChIP HEK293T GSE129618.NFKB1.HEK293T 91 bp overlap
Npas2 1 dataset
Motif DE_24h DE_24h-Npas2_MA0626.2 8 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 309 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 276 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 282 bp overlap
PATZ1 1 dataset
Motif DE_24h DE_24h-PATZ1_MA1961.2 11 bp overlap
PCBP1 2 datasets
ChIP K-562 ENCSR052PTN.PCBP1.K-562 201 bp overlap
ChIP K-562 GSE120104.PCBP1.K-562 178 bp overlap
PCGF2 2 datasets
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 77 bp overlap
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 203 bp overlap
POLR2A 7 datasets
ChIP sigmoid colon ENCFF543ARF 280 bp overlap
ChIP sigmoid colon ENCFF543ARF 304 bp overlap
ChIP sigmoid colon ENCFF725QFT 118 bp overlap
ChIP sigmoid colon ENCFF725QFT 107 bp overlap
ChIP sigmoid colon ENCFF748YVT 284 bp overlap
ChIP spleen ENCFF446ZGT 412 bp overlap
ChIP spleen ENCFF706IUS 412 bp overlap
POU2F1 1 dataset
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 180 bp overlap
POU5F1 4 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 399 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 412 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 189 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 391 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 319 bp overlap
PRDM14 4 datasets
ChIP NCCIT GSE71675.PRDM14.NCCIT 341 bp overlap
ChIP hESC GSE22767.PRDM14.hESC 239 bp overlap
ChIP hESC GSE138674.PRDM14.hESC 202 bp overlap
ChIP primordial-germ-cell-like-cell GSE138674.PRDM14.primordial-germ-cell-like-cell 412 bp overlap
RELA 1 dataset
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 403 bp overlap
RNF2 2 datasets
ChIP H1 ENCFF239FFS 270 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 95 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 412 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 347 bp overlap
RUNX1 2 datasets
ChIP Jurkat GSE85524.RUNX1.Jurkat 216 bp overlap
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 189 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 116 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 196 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 412 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 194 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 104 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 267 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 357 bp overlap
SMARCC1 2 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 407 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 371 bp overlap
SOHLH2 1 dataset
Motif DE_24h DE_24h-SOHLH2_MA1560.2 8 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 148 bp overlap
SP2 1 dataset
Motif DE_24h DE_24h-SP2_MA0516.3 9 bp overlap
SP3 1 dataset
Motif DE_24h DE_24h-SP3_MA0746.3 11 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 133 bp overlap
SPI1 1 dataset
ChIP Kasumi-1_SIRUNX1ETO GSE60130.SPI1.Kasumi-1_SIRUNX1ETO 214 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 309 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 256 bp overlap
SS18 2 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 412 bp overlap
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 112 bp overlap
SUZ12 6 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 412 bp overlap
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 328 bp overlap
ChIP H1 ENCFF507HGF 259 bp overlap
ChIP H1 ENCFF881NFR 412 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 381 bp overlap
ChIP NT2/D1 ENCFF574SXS 412 bp overlap
TBP 1 dataset
ChIP WA01 ENCSR000ECB.TBP.WA01 197 bp overlap
TCF3 1 dataset
Motif DE_24h DE_24h-TCF3_MA0522.4 7 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 193 bp overlap
TP53 1 dataset
ChIP HCT-116_IR GSE60267.TP53.HCT-116_IR 332 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 178 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 171 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 288 bp overlap
USF1 4 datasets
ChIP H1 ENCFF090WVU 227 bp overlap
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 126 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 217 bp overlap
ChIP WTC11 ENCFF699QGS 319 bp overlap
USF2 3 datasets
ChIP WA01 ENCSR000ECD.USF2.WA01 177 bp overlap
ChIP WTC11 ENCFF139JAW 337 bp overlap
ChIP WTC11 ENCFF139JAW 287 bp overlap
Wt1 1 dataset
Motif DE_24h DE_24h-Wt1_MA1627.2 10 bp overlap
YY1 3 datasets
ChIP H1 ENCFF524BTL 296 bp overlap
ChIP Huh-7 GSE97411.YY1.Huh-7 276 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 412 bp overlap
ZFP14 1 dataset
Motif DE_24h DE_24h-ZFP14_MA1972.1 15 bp overlap
ZNF140 4 datasets
Motif DE_24h DE_24h-ZNF140_MA1589.2 19 bp overlap
ChIP HEK293 ENCFF501RUF 337 bp overlap
ChIP HEK293 ENCSR464KFG.ZNF140.HEK293 338 bp overlap
ChIP HEK293 GSE76494.ZNF140.HEK293 338 bp overlap
ZNF202 2 datasets
ChIP HEK293 ENCFF574FZA 341 bp overlap
ChIP HEK293 ENCSR996FYT.ZNF202.HEK293 254 bp overlap
ZNF320 2 datasets
Motif DE_24h DE_24h-ZNF320_MA1976.2 20 bp overlap
ChIP HEK293 GSE76494.ZNF320.HEK293 267 bp overlap
ZNF331 1 dataset
Motif DE_24h DE_24h-ZNF331_MA1726.2 10 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 147 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 113 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 153 bp overlap
ZNF75A 1 dataset
Motif DE_24h DE_24h-ZNF75A_MA2097.1 12 bp overlap
Zbtb2 1 dataset
Motif DE_24h DE_24h-Zbtb2_MA2340.1 10 bp overlap
Zfp809 1 dataset
Motif DE_24h DE_24h-Zfp809_MA2125.1 9 bp overlap