chr1 : 172,537,930 – 172,538,246
316 bp 102 TFs 1 linked gene
This 316 bp open chromatin element is linked to SUCO and is bound by 102 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SUCO 4.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:172,532,930 – 172,543,246
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
102 transcription factors
Source
Cell type
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 240 bp overlap
ChIP K562 ENCFF938UXQ 316 bp overlap
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 210 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 316 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 316 bp overlap
ATF1 1 dataset
ChIP K562 ENCFF980NSF 127 bp overlap
ATF2 3 datasets
Motif DE_12h DE_12h-ATF2_MA1632.2 10 bp overlap
ChIP H1 ENCFF295GZO 316 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 316 bp overlap
ATF3 3 datasets
Motif DE_12h DE_12h-ATF3_MA0605.3 10 bp overlap
ChIP K-562 ENCSR028UIU.ATF3.K-562 291 bp overlap
ChIP K562 ENCFF921JQW 316 bp overlap
ATF7 1 dataset
Motif DE_12h DE_12h-ATF7_MA0834.2 10 bp overlap
Ahr::Arnt 1 dataset
Motif ES_0h ES_0h-AhrArnt_MA0006.2 5 bp overlap
CREB1 1 dataset
Motif DE_12h DE_12h-CREB1_MA0018.5 8 bp overlap
CREM 1 dataset
Motif DE_12h DE_12h-CREM_MA0609.3 10 bp overlap
Creb5 1 dataset
Motif DE_12h DE_12h-Creb5_MA0840.2 10 bp overlap
E2F1 1 dataset
ChIP K562 ENCFF749FMR 300 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 132 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 186 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 316 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 274 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 316 bp overlap
ELF4 1 dataset
ChIP K562 ENCFF200OMJ 296 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 257 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 133 bp overlap
ESR1 1 dataset
Motif DE_12h DE_12h-ESR1_MA0112.4 15 bp overlap
ESR2 1 dataset
Motif DE_12h DE_12h-ESR2_MA0258.2 15 bp overlap
ETV5::FOXO1 1 dataset
Motif DE_12h DE_12h-ETV5FOXO1_MA1947.2 10 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 316 bp overlap
FOS::JUN 1 dataset
Motif DE_12h DE_12h-FOSJUN_MA1126.2 10 bp overlap
FOSB::JUNB 1 dataset
Motif DE_12h DE_12h-FOSBJUNB_MA1136.1 10 bp overlap
FOSL1 2 datasets
ChIP K-562 ENCSR239ZLZ.FOSL1.K-562 289 bp overlap
ChIP K562 ENCFF455MKD 316 bp overlap
FOSL1::JUN 1 dataset
Motif DE_12h DE_12h-FOSL1JUN_MA1129.1 10 bp overlap
FOSL2 1 dataset
ChIP LPS141 GSE111253.FOSL2.LPS141 191 bp overlap
FOSL2::JUN 1 dataset
Motif DE_12h DE_12h-FOSL2JUN_MA1131.2 10 bp overlap
FOSL2::JUNB 1 dataset
Motif DE_12h DE_12h-FOSL2JUNB_MA1139.2 10 bp overlap
FOSL2::JUND 1 dataset
Motif DE_12h DE_12h-FOSL2JUND_MA1145.2 10 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 124 bp overlap
GATA1 1 dataset
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 290 bp overlap
GATA2 1 dataset
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 130 bp overlap
GATA4 1 dataset
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 177 bp overlap
GRHL2 1 dataset
ChIP HBE GSE46194.GRHL2.HBE 66 bp overlap
GTF2F1 2 datasets
ChIP Hep-G2 GSE120104.GTF2F1.Hep-G2 244 bp overlap
ChIP Hep-G2 ENCSR382PVA.GTF2F1.Hep-G2 241 bp overlap
HDAC1 2 datasets
ChIP K-562 ENCSR711VWL.HDAC1.K-562 251 bp overlap
ChIP K562 ENCFF928TKZ 316 bp overlap
HDAC2 2 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 192 bp overlap
ChIP K562 ENCFF744ALD 283 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 281 bp overlap
ISL2 1 dataset
Motif ES_0h ES_0h-ISL2_MA0914.2 6 bp overlap
JDP2 1 dataset
Motif DE_12h DE_12h-JDP2_MA0656.2 10 bp overlap
JUN 9 datasets
Motif DE_12h DE_12h-JUN_MA0488.2 10 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 303 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 281 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 255 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 300 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 294 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 316 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 316 bp overlap
ChIP K-562 ENCSR000FAH.JUN.K-562 108 bp overlap
JUN::JUNB 1 dataset
Motif DE_12h DE_12h-JUNJUNB_MA1133.2 11 bp overlap
JUNB 1 dataset
Motif DE_12h DE_12h-JUNB_MA1140.3 11 bp overlap
JUND 4 datasets
Motif DE_12h DE_12h-JUND_MA0492.2 11 bp overlap
ChIP H1 ENCFF468JZD 231 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 253 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 176 bp overlap
L3MBTL2 1 dataset
ChIP HEK293T ENCFF482NJV 316 bp overlap
MAX 3 datasets
ChIP H1 ENCFF601FOM 291 bp overlap
ChIP H1 ENCFF914VQY 106 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 316 bp overlap
MITF 2 datasets
ChIP K-562 ENCSR797SWM.MITF.K-562 240 bp overlap
ChIP K562 ENCFF731XJJ 298 bp overlap
MSANTD3 1 dataset
Motif ES_0h ES_0h-MSANTD3_MA1523.2 7 bp overlap
MXI1 1 dataset
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
MYCN 1 dataset
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 147 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 316 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 316 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 316 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 316 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 223 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 168 bp overlap
NKX2-3 1 dataset
Motif DE_12h DE_12h-NKX2-3_MA0672.2 8 bp overlap
NKX2-4 1 dataset
Motif DE_12h DE_12h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 1 dataset
Motif DE_12h DE_12h-NKX2-8_MA0673.2 8 bp overlap
NR2C1 1 dataset
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
NR2F1 1 dataset
Motif DE_12h DE_12h-NR2F1_MA0017.3 12 bp overlap
Nkx3-2 1 dataset
Motif ES_0h ES_0h-Nkx3-2_MA0122.4 10 bp overlap
Nr1H2 1 dataset
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
Nr2F6 1 dataset
Motif DE_12h DE_12h-Nr2F6_MA0728.1 15 bp overlap
PAX5 1 dataset
ChIP fetal_testis GSE100639.PAX5.fetal_testis 88 bp overlap
PHOX2B 1 dataset
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 227 bp overlap
POLR2A 3 datasets
ChIP H1 ENCFF566JSR 226 bp overlap
ChIP H1 ENCFF833NJP 194 bp overlap
ChIP H1 ENCFF833NJP 264 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 147 bp overlap
POU5F1 11 datasets
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 316 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 316 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 316 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 174 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 237 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 142 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 316 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 316 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 251 bp overlap
ChIP hiPSC GSE149017.POU5F1.hiPSC 167 bp overlap
PPARG 1 dataset
Motif DE_12h DE_12h-PPARG_MA0066.2 19 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 316 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 74 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 285 bp overlap
Prdm5 1 dataset
Motif DE_12h DE_12h-Prdm5_MA1999.2 11 bp overlap
REST 3 datasets
ChIP H1 ENCFF429RUE 221 bp overlap
ChIP K-562 ENCSR137ZMQ.REST.K-562 228 bp overlap
ChIP K562 ENCFF688UKW 316 bp overlap
RORA 1 dataset
Motif ES_0h ES_0h-RORA_MA0072.2 11 bp overlap
Rarb 1 dataset
Motif DE_12h DE_12h-Rarb_MA0857.1 16 bp overlap
Rarg 1 dataset
Motif DE_12h DE_12h-Rarg_MA0859.2 15 bp overlap
SMARCA4 3 datasets
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 57 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 249 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 316 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 234 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 198 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 186 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 313 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 304 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 183 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 316 bp overlap
TBP 5 datasets
ChIP WA01 ENCSR000ECB.TBP.WA01 303 bp overlap
ChIP hESC GSE122298.TBP.hESC 256 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 179 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 267 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 131 bp overlap
TCF12 2 datasets
ChIP SK-N-SH ENCFF147AHB 316 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 175 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 234 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 246 bp overlap
TFEB 1 dataset
Motif DE_12h DE_12h-TFEB_MA0692.2 8 bp overlap
TFEC 1 dataset
Motif DE_12h DE_12h-TFEC_MA0871.3 8 bp overlap
THRA 1 dataset
Motif ES_0h ES_0h-THRA_MA1969.2 18 bp overlap
TSC22D4 1 dataset
ChIP K562 ENCFF522GDD 277 bp overlap
Tfcp2l1 1 dataset
Motif DE_12h DE_12h-Tfcp2l1_MA0145.2 14 bp overlap
USF1 5 datasets
Motif DE_12h DE_12h-USF1_MA0093.4 10 bp overlap
ChIP H1 ENCFF090WVU 173 bp overlap
ChIP K-562 ENCSR000BKT.USF1.K-562 157 bp overlap
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 191 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 316 bp overlap
USF2 2 datasets
ChIP H1 ENCFF434EDF 277 bp overlap
ChIP WA01 ENCSR000ECD.USF2.WA01 139 bp overlap
WT1 1 dataset
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 269 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 269 bp overlap
ZEB2 1 dataset
ChIP K562 ENCFF795CMH 316 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 264 bp overlap
ZNF189 1 dataset
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 294 bp overlap
ZNF24 2 datasets
ChIP HEK293 ENCSR984MDV.ZNF24.HEK293 280 bp overlap
ChIP K-562 ENCSR099NCH.ZNF24.K-562 285 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 203 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 316 bp overlap
ZNF416 1 dataset
Motif ES_0h ES_0h-ZNF416_MA1979.2 10 bp overlap
ZNF629 1 dataset
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 279 bp overlap
ZNF766 1 dataset
ChIP HEK293T GSE78099.ZNF766.HEK293T 230 bp overlap
Huangfu Lab · Publications · Resources · Contact