chr1:160,095,707–160,096,231

chr1 : 160,095,707 – 160,096,231

524 bp 79 TFs 10 linked genes

This 524 bp open chromatin element is linked to 10 target genes and is bound by 79 transcription factors.

Linked Genes

10 genes

Gene	Expression	Dist. to TSS	Distance	Link type
IGSF8		2.4 kb	Proximal	Proximity
ATP1A2		19.8 kb	Distal	Multiome
PIGM		64.0 kb	Distal	Multiome
PEA15		109.4 kb	Distal	Multiome+HiCAR
IGSF9		150.4 kb	Distal	Multiome
DCAF8		166.5 kb	Distal	Multiome
TAGLN2		170.5 kb	Distal	Multiome
PEX19		189.1 kb	Distal	Multiome
COPA		247.3 kb	Distal	Multiome
NCSTN		247.4 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

79 transcription factors

ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 183 bp overlap

ARID1A 1 dataset

ChIP RMG-I GSE104545.ARID1A.RMG-I 444 bp overlap

ASCL1 1 dataset

ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 179 bp overlap

ASH2L 2 datasets

ChIP H1 ENCFF399KAM 524 bp overlap

ChIP WA01 ENCSR850KIP.ASH2L.WA01 524 bp overlap

ChIP WA01 ENCSR000BQU.ATF2.WA01 204 bp overlap

ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 314 bp overlap

ChIP HUES-64 GSE104059.BRD1.HUES-64 259 bp overlap

ChIP COLO-741 GSE73319.BRD4.COLO-741 221 bp overlap

ChIP H1 ENCFF126NLU 495 bp overlap

CLOCK 1 dataset

ChIP BA40_3 GSE96659.CLOCK.BA40_3 150 bp overlap

CTBP2 1 dataset

ChIP WA01 ENCSR000EUO.CTBP2.WA01 515 bp overlap

CTCF 26 datasets

ChIP GM23338 ENCFF772DML 201 bp overlap

ChIP H1 ENCFF414GZI 217 bp overlap

ChIP H1 ENCFF764RHO 277 bp overlap

ChIP HAP1 GSE152721.CTCF.HAP1 194 bp overlap

ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 262 bp overlap

ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 207 bp overlap

ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 270 bp overlap

ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 182 bp overlap

ChIP WA01 ENCSR000DLK.CTCF.WA01 112 bp overlap

ChIP dorsolateral prefrontal cortex ENCFF235CPK 353 bp overlap

ChIP dorsolateral prefrontal cortex ENCFF267VHH 471 bp overlap

ChIP dorsolateral prefrontal cortex ENCFF277CZQ 429 bp overlap

ChIP dorsolateral prefrontal cortex ENCFF277CZQ 379 bp overlap

ChIP dorsolateral prefrontal cortex ENCFF359BHR 389 bp overlap

ChIP dorsolateral prefrontal cortex ENCFF442YDO 345 bp overlap

ChIP dorsolateral prefrontal cortex ENCFF457ZGY 334 bp overlap

ChIP dorsolateral prefrontal cortex ENCFF458OBF 466 bp overlap

ChIP dorsolateral prefrontal cortex ENCFF595WAL 491 bp overlap

ChIP dorsolateral prefrontal cortex ENCFF631JNO 418 bp overlap

ChIP dorsolateral prefrontal cortex ENCFF733NZH 403 bp overlap

ChIP dorsolateral prefrontal cortex ENCFF748IBN 425 bp overlap

ChIP dorsolateral prefrontal cortex ENCFF767LNC 365 bp overlap

ChIP dorsolateral prefrontal cortex ENCFF812HQJ 400 bp overlap

ChIP dorsolateral prefrontal cortex ENCFF974AQC 424 bp overlap

ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 158 bp overlap

ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 281 bp overlap

ChIP H1 ENCFF785DWK 451 bp overlap

EP300 2 datasets

ChIP H1 ENCFF927IYK 297 bp overlap

ChIP WA01 ENCSR000BKK.EP300.WA01 255 bp overlap

ESR1 2 datasets

ChIP MCF-7_Veh GSE93510.ESR1.MCF-7_Veh 84 bp overlap

ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 158 bp overlap

FOXB1 1 dataset

Motif ES_0h ES_0h-FOXB1_MA0845.1 11 bp overlap

FOXC1 1 dataset

Motif ES_0h ES_0h-FOXC1_MA0032.2 11 bp overlap

GATA1 2 datasets

ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 72 bp overlap

ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 61 bp overlap

GATA2 1 dataset

ChIP K-562 ENCSR000DKA.GATA2.K-562 124 bp overlap

GLIS3 1 dataset

ChIP H9_plus GSE109562.GLIS3.H9_plus 400 bp overlap

HDAC2 3 datasets

ChIP H1 ENCFF939VKA 237 bp overlap

ChIP WA01 ENCSR000BNR.HDAC2.WA01 161 bp overlap

ChIP WA01 ENCSR000AVB.HDAC2.WA01 191 bp overlap

HNF4A 1 dataset

ChIP liver ENCFF449HPV 96 bp overlap

HNRNPL 1 dataset

ChIP Hep-G2 GSE120104.HNRNPL.Hep-G2 248 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 258 bp overlap

ChIP HUES-8 GSE109524.JUN.HUES-8 415 bp overlap

ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 410 bp overlap

ChIP HEK293 ENCSR859BMR.KLF1.HEK293 211 bp overlap

ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 208 bp overlap

ChIP HEK293_D418N GSE88976.KLF5.HEK293_D418N 292 bp overlap

ChIP GBM1A GSE62211.KLF9.GBM1A 79 bp overlap

KMT2D 1 dataset

ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 134 bp overlap

ChIP H1 ENCFF914VQY 357 bp overlap

Motif ES_0h ES_0h-MTF1_MA0863.1 14 bp overlap

Motif ES_0h ES_0h-MXI1_MA1108.3 6 bp overlap

NANOG 3 datasets

ChIP H1 ENCFF747ZPQ 241 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 464 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 138 bp overlap

OLIG2 5 datasets

ChIP brain-prefrontal-cortex_2016018 GSE129039.OLIG2.brain-prefrontal-cortex_2016018 235 bp overlap

ChIP brain-prefrontal-cortex_2017011 GSE129039.OLIG2.brain-prefrontal-cortex_2017011 331 bp overlap

ChIP brain-prefrontal-cortex_2017014 GSE129039.OLIG2.brain-prefrontal-cortex_2017014 290 bp overlap

ChIP brain-prefrontal-cortex_2017025 GSE129039.OLIG2.brain-prefrontal-cortex_2017025 310 bp overlap

ChIP brain-prefrontal-cortex_2017039 GSE129039.OLIG2.brain-prefrontal-cortex_2017039 208 bp overlap

PCGF1 1 dataset

ChIP WA01 GSE104690.PCGF1.WA01 429 bp overlap

POLR2A 1 dataset

ChIP H1 ENCFF566JSR 474 bp overlap

POU1F1 2 datasets

Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap

Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap

POU2F1 1 dataset

Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap

POU2F2 1 dataset

Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap

POU2F3 2 datasets

Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap

ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 297 bp overlap

POU3F1 1 dataset

Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap

POU3F2 2 datasets

Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap

Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap

POU3F3 1 dataset

Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap

POU3F4 1 dataset

Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap

POU5F1 10 datasets

ChIP BG03 GSE21614.POU5F1.BG03 223 bp overlap

ChIP DE_D1 DED1-OCT4_Batch_II 469 bp overlap

Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap

ChIP GM23338 ENCFF333SNB 311 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 501 bp overlap

ChIP OSKM GSE81899.POU5F1.OSKM 159 bp overlap

ChIP hESC ENCSR264RJX.POU5F1.hESC 202 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 406 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 272 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 180 bp overlap

POU5F1B 1 dataset

Motif ES_0h ES_0h-POU5F1B_MA0792.1 9 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 419 bp overlap

PRDM10 1 dataset

ChIP K-562 ENCSR120MPG.PRDM10.K-562 81 bp overlap

RBBP5 2 datasets

ChIP WA01 ENCSR000AQC.RBBP5.WA01 197 bp overlap

ChIP WA01 ENCSR000AQC.RBBP5.WA01 193 bp overlap

ChIP hippocampus GSE144226.REST.hippocampus 377 bp overlap

ChIP WA01 GSE104690.RYBP.WA01 245 bp overlap

SAP30 2 datasets

ChIP H1 ENCFF149IOE 402 bp overlap

ChIP WA01 ENCSR000ATR.SAP30.WA01 173 bp overlap

SIN3A 2 datasets

ChIP H1 ENCFF042ZSL 469 bp overlap

ChIP WA01 ENCSR000EBO.SIN3A.WA01 410 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 285 bp overlap

SMAD3 1 dataset

ChIP BG03 GSE21614.SMAD3.BG03 142 bp overlap

SMARCA4 5 datasets

ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 82 bp overlap

ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 203 bp overlap

ChIP NSC GSE125033.SMARCA4.NSC 252 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 372 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 364 bp overlap

SMARCB1 3 datasets

ChIP HeLa-S3 ENCSR000EDK.SMARCB1.HeLa-S3 186 bp overlap

ChIP hiPSC GSE124903.SMARCB1.hiPSC 242 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 523 bp overlap

SMARCC1 2 datasets

ChIP hiPSC GSE124903.SMARCC1.hiPSC 343 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 425 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 361 bp overlap

ChIP H1 ENCFF263FUH 321 bp overlap

ChIP WA01 ENCSR000BIR.SP1.WA01 344 bp overlap

ChIP WTC11 ENCFF688PEU 432 bp overlap

ChIP WTC11 ENCFF688PEU 232 bp overlap

ChIP liver ENCFF597LFJ 148 bp overlap

SREBP2 1 dataset

ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 108 bp overlap

Motif ES_0h ES_0h-SRF_MA0083.3 16 bp overlap

TAF1 2 datasets

ChIP H1 ENCFF478SZO 454 bp overlap

ChIP WA01 ENCSR000BHO.TAF1.WA01 332 bp overlap

ChIP H1 ENCFF859IIO 349 bp overlap

ChIP WA01 ENCSR000ECB.TBP.WA01 312 bp overlap

ChIP hESC GSE122298.TBP.hESC 132 bp overlap

TCF12 2 datasets

ChIP H1 ENCFF203EBH 251 bp overlap

ChIP WA01 ENCSR000BIT.TCF12.WA01 451 bp overlap

ChIP NPC GSE154479.TCF3.NPC 250 bp overlap

ChIP GEN2-2 GSE76147.TCF4.GEN2-2 162 bp overlap

TEAD1 1 dataset

ChIP H69 GSE62274.TEAD1.H69 151 bp overlap

TEAD4 2 datasets

ChIP ESC S26-ESC-d0-TEAD4-exp1 286 bp overlap

ChIP H1 ENCFF778PAX 245 bp overlap

USF1 2 datasets

ChIP H1 ENCFF090WVU 154 bp overlap

ChIP WA01 ENCSR000BIU.USF1.WA01 103 bp overlap

ChIP H1 ENCFF524BTL 337 bp overlap

ChIP HCT-116 ENCSR000BNX.YY1.HCT-116 137 bp overlap

ChIP WA01 ENCSR000BKD.YY1.WA01 411 bp overlap

ChIP liver ENCFF400MBC 263 bp overlap

ZBTB21 1 dataset

ChIP WTC11 ENCFF677ZYY 352 bp overlap

ChIP HEK293T_22Rv1 GSE145160.ZFX.HEK293T_22Rv1 419 bp overlap

ZNF114 1 dataset

ChIP GM23338 ENCFF631OSW 338 bp overlap

ZNF143 2 datasets

ChIP WA01 ENCSR000EBW.ZNF143.WA01 284 bp overlap

ChIP WTC11 ENCFF249JUK 485 bp overlap

ZNF24 1 dataset

Motif ES_0h ES_0h-ZNF24_MA1124.1 13 bp overlap

ZNF354A 1 dataset

Motif ES_0h ES_0h-ZNF354A_MA1978.2 20 bp overlap

ZNF462 2 datasets

ChIP GM23338 ENCFF896CCA 251 bp overlap

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 485 bp overlap