chr7 : 132,687,966 – 132,688,446
480 bp 112 TFs 1 linked gene
This 480 bp open chromatin element is linked to PLXNA4 and is bound by 112 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PLXNA4 110.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:132,682,966 – 132,693,446
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
112 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 102 bp overlap
ARGFX 1 dataset
Motif ES_0h ES_0h-ARGFX_MA1463.2 8 bp overlap
ARID1A 1 dataset
ChIP NGP GSE134626.ARID1A.NGP 315 bp overlap
ASH2L 2 datasets
ChIP WA01 ENCSR850KIP.ASH2L.WA01 201 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 216 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 411 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 318 bp overlap
Alx4 1 dataset
Motif ES_0h ES_0h-Alx4_MA0853.2 12 bp overlap
Arx 1 dataset
Motif ES_0h ES_0h-Arx_MA0874.2 10 bp overlap
BARX1 1 dataset
Motif ES_0h ES_0h-BARX1_MA0875.2 6 bp overlap
BCOR 4 datasets
ChIP WA01 GSE104690.BCOR.WA01 397 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 221 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 191 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 449 bp overlap
BRD4 7 datasets
ChIP BE2C GSE80151.BRD4.BE2C 332 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 449 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 455 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 480 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 332 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 422 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 192 bp overlap
BSX 1 dataset
Motif ES_0h ES_0h-BSX_MA0876.2 6 bp overlap
CEBPG 1 dataset
Motif ES_0h ES_0h-CEBPG_MA1636.2 10 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 375 bp overlap
CREM 1 dataset
ChIP WTC11 ENCFF209ZUE 287 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 408 bp overlap
CTCF 3 datasets
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 127 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCF.Kelly_resistant_JQ1 212 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 351 bp overlap
CTCFL 1 dataset
ChIP Kelly_resistant_JQ1 GSE103030.CTCFL.Kelly_resistant_JQ1 122 bp overlap
DLX1 1 dataset
Motif ES_0h ES_0h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif ES_0h ES_0h-DLX6_MA0882.2 6 bp overlap
DPRX 1 dataset
Motif ES_0h ES_0h-DPRX_MA1480.2 9 bp overlap
DUX4 1 dataset
Motif ES_0h ES_0h-DUX4_MA0468.1 11 bp overlap
DUXA 1 dataset
Motif ES_0h ES_0h-DUXA_MA0884.2 13 bp overlap
Dlx2 1 dataset
Motif ES_0h ES_0h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif ES_0h ES_0h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif ES_0h ES_0h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif ES_0h ES_0h-Dlx5_MA1476.3 8 bp overlap
Dux 1 dataset
Motif ES_0h ES_0h-Dux_MA0611.3 11 bp overlap
E2F5 1 dataset
ChIP WTC11 ENCFF449LLF 359 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 108 bp overlap
E2F7 1 dataset
Motif ES_0h ES_0h-E2F7_MA0758.1 14 bp overlap
EBF1 2 datasets
ChIP GM12878 ENCFF167CZS 300 bp overlap
ChIP GM12878 ENCFF813OXE 243 bp overlap
EBF3_P177L 1 dataset
ChIP SK-N-SH GSE90682.EBF3_P177L.SK-N-SH 268 bp overlap
EP300 3 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 143 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 186 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 400 bp overlap
FOXP4 2 datasets
ChIP WTC11 ENCFF708TAF 263 bp overlap
ChIP WTC11 ENCFF708TAF 297 bp overlap
GATA1 1 dataset
Motif ES_0h ES_0h-GATA1_MA0035.5 7 bp overlap
GATA3 2 datasets
ChIP Kelly GSE94822.GATA3.Kelly 454 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 242 bp overlap
GATA6 4 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 339 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 401 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 425 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 388 bp overlap
GBX2 1 dataset
Motif ES_0h ES_0h-GBX2_MA0890.2 6 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 268 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 447 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 247 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 378 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 234 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 440 bp overlap
HESX1 1 dataset
Motif ES_0h ES_0h-HESX1_MA0894.2 6 bp overlap
HOXA7 1 dataset
Motif ES_0h ES_0h-HOXA7_MA1498.3 6 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 480 bp overlap
ChIP SK-N-SH ENCFF285GEQ 396 bp overlap
Isl1 1 dataset
Motif ES_0h ES_0h-Isl1_MA1608.2 7 bp overlap
JUN 10 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 480 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 480 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 480 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 384 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 480 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 480 bp overlap
ChIP H1 ENCFF621PNP 241 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 480 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 480 bp overlap
ChIP WA01 ENCSR000ECA.JUN.WA01 196 bp overlap
JUNB 1 dataset
ChIP GM12878 ENCSR897MMC.JUNB.GM12878 171 bp overlap
JUND 4 datasets
ChIP H1 ENCFF010YXS 307 bp overlap
ChIP H1 ENCFF468JZD 231 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 240 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 180 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 330 bp overlap
LBX2 1 dataset
Motif ES_0h ES_0h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif ES_0h ES_0h-LHX2_MA0700.3 6 bp overlap
MAF::NFE2 1 dataset
Motif ES_0h ES_0h-MAFNFE2_MA0501.2 11 bp overlap
MAFF 1 dataset
Motif ES_0h ES_0h-MAFF_MA0495.4 11 bp overlap
MAFG::NFE2L1 1 dataset
Motif ES_0h ES_0h-MAFGNFE2L1_MA0089.3 11 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 295 bp overlap
MAZ 1 dataset
ChIP HEK293 GSE76494.MAZ.HEK293 130 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 285 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 394 bp overlap
MSX1 1 dataset
Motif ES_0h ES_0h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif ES_0h ES_0h-MSX2_MA0708.3 6 bp overlap
MTA2 1 dataset
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 193 bp overlap
MYBL2 1 dataset
ChIP WTC11 ENCFF166TKT 407 bp overlap
MYCN 7 datasets
ChIP BE2C GSE80151.MYCN.BE2C 261 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 283 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 434 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 286 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 300 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 228 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 261 bp overlap
MZF1 1 dataset
Motif ES_0h ES_0h-MZF1_MA0056.3 8 bp overlap
Mafb 1 dataset
Motif ES_0h ES_0h-Mafb_MA0117.3 11 bp overlap
Msx3 1 dataset
Motif ES_0h ES_0h-Msx3_MA0709.2 6 bp overlap
NANOG 7 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 480 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 375 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 445 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 480 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 433 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 272 bp overlap
ChIP hESC GSE18292.NANOG.hESC 198 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 377 bp overlap
NIPBL 4 datasets
ChIP hESC GSE64758.NIPBL.hESC 352 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 190 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 212 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 279 bp overlap
NRL 1 dataset
Motif ES_0h ES_0h-NRL_MA0842.3 12 bp overlap
Nobox 1 dataset
Motif ES_0h ES_0h-Nobox_MA0125.2 6 bp overlap
PBX3 1 dataset
Motif ES_0h ES_0h-PBX3_MA1114.2 11 bp overlap
PHOX2A 1 dataset
Motif ES_0h ES_0h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 369 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 411 bp overlap
POU5F1 3 datasets
ChIP BG03 GSE21614.POU5F1.BG03 195 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 287 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 480 bp overlap
PROP1 1 dataset
Motif ES_0h ES_0h-PROP1_MA0715.1 11 bp overlap
Pax7 1 dataset
Motif ES_0h ES_0h-Pax7_MA0680.3 10 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 457 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 394 bp overlap
RAX 1 dataset
Motif ES_0h ES_0h-RAX_MA0718.2 6 bp overlap
RUNX1 1 dataset
ChIP 697 GSE138031.RUNX1.697 224 bp overlap
SIN3A 1 dataset
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 177 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 441 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 480 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 438 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 480 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 480 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 420 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 464 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 378 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 348 bp overlap
SMAD3 4 datasets
ChIP BG03 GSE21614.SMAD3.BG03 301 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 434 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 130 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 448 bp overlap
SMARCA4 3 datasets
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 345 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 381 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 176 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 200 bp overlap
SMARCC1 4 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 212 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 307 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 271 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 361 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 226 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 162 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 362 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 424 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WTC11 ENCFF688PEU 412 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 176 bp overlap
TAF1 2 datasets
ChIP WA01 ENCSR000BHO.TAF1.WA01 163 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 170 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 416 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 308 bp overlap
TEAD4 3 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 417 bp overlap
ChIP ESC S26-ESC-d0-TEAD4-exp1 281 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 417 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 268 bp overlap
YY1 4 datasets
ChIP H1 ENCFF524BTL 287 bp overlap
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 206 bp overlap
ChIP NT2/D1 ENCFF999MII 251 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 268 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 331 bp overlap
ZNF140 1 dataset
Motif ES_0h ES_0h-ZNF140_MA1589.2 19 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 264 bp overlap
ZNF320 1 dataset
ChIP HEK293 GSE76494.ZNF320.HEK293 66 bp overlap
ZNF398 4 datasets
ChIP BG01V GSE133630.ZNF398.BG01V 236 bp overlap
ChIP H9 GSE133630.ZNF398.H9 173 bp overlap
ChIP HEK293 ENCFF184XEW 423 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 303 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 480 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 140 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 183 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 252 bp overlap
ZNF547 1 dataset
Motif ES_0h ES_0h-ZNF547_MA2334.1 13 bp overlap
ZNF770 1 dataset
Motif ES_0h ES_0h-ZNF770_MA2099.1 8 bp overlap
ZNF816 1 dataset
Motif ES_0h ES_0h-ZNF816_MA1719.2 15 bp overlap
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