chr7 : 30,472,499 30,473,444
945 bp 123 TFs 7 linked genes
This 945 bp open chromatin element is linked to 7 target genes and is bound by 123 transcription factors.
Linked Genes
7 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
NOD1 5.2 kb Proximal Proximity
GGCT 31.9 kb Distal Multiome
GARS1-DT 121.8 kb Distal Multiome
GARS1 121.9 kb Distal Multiome
ZNRF2 188.3 kb Distal Multiome
INMT 279.2 kb Distal Multiome
MINDY4 298.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:30,467,499 – 30,478,444
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
123 transcription factors
Source
Cell type
ARNTL 2 datasets
ChIP U2OS_DMSO GSE85096.ARNTL.U2OS_DMSO 777 bp overlap
ChIP U2OS_trough_DMSO GSE85096.ARNTL.U2OS_trough_DMSO 169 bp overlap
BARX1 1 dataset
Motif DE_24h DE_24h-BARX1_MA0875.2 6 bp overlap
BRD4 4 datasets
ChIP HCC1395 GSE63581.BRD4.HCC1395 509 bp overlap
ChIP HCC1395_JQ1 GSE63581.BRD4.HCC1395_JQ1 299 bp overlap
ChIP SUM159PT_100nMtrametinib300nMJQ1_24h GSE87418.BRD4.SUM159PT_100nMtrametinib300nMJQ1_24h 332 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 910 bp overlap
BRD9 1 dataset
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD9.MDA-MB-231_JQ1_MGSK2801 306 bp overlap
BSX 1 dataset
Motif DE_24h DE_24h-BSX_MA0876.2 6 bp overlap
CDX2 1 dataset
Motif DE_24h DE_24h-CDX2_MA0465.3 8 bp overlap
CEBPB 2 datasets
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 228 bp overlap
ChIP IMR-90 ENCFF468UGY 251 bp overlap
CTCFL 1 dataset
Motif DE_36h DE_36h-CTCFL_MA1102.3 8 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF896HSY 331 bp overlap
DLX1 1 dataset
Motif DE_24h DE_24h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_24h DE_24h-DLX6_MA0882.2 6 bp overlap
DPF2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.DPF2.BIN-67_lentivirus-SMARCA4 529 bp overlap
Dlx2 1 dataset
Motif DE_24h DE_24h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif DE_24h DE_24h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_24h DE_24h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif DE_24h DE_24h-Dlx5_MA1476.3 8 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 744 bp overlap
ChIP hESC GSE26097.EOMES.hESC 102 bp overlap
EP300 1 dataset
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 54 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 783 bp overlap
ETS1 2 datasets
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 206 bp overlap
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 333 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 945 bp overlap
ChIP DE DE-FOXA2-2 945 bp overlap
GATA2 3 datasets
ChIP SH-SY5Y ENCFF485YIB 117 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 77 bp overlap
ChIP SK-N-SH ENCFF764OZD 91 bp overlap
GATA4 8 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 55 bp overlap
ChIP DE DE-GATA4-1 945 bp overlap
ChIP DE DE-GATA4-2 945 bp overlap
ChIP G296S GSE85628.GATA4.G296S 121 bp overlap
ChIP G296S_2 GSE85628.GATA4.G296S_2 121 bp overlap
ChIP cardiomyocyte_7 GSE85628.GATA4.cardiomyocyte_7 284 bp overlap
ChIP foregut GSE117136.GATA4.foregut 87 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 125 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 945 bp overlap
ChIP DE DE-GATA6-2 929 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 945 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 945 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 945 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 945 bp overlap
ChIP foregut GSE117136.GATA6.foregut 52 bp overlap
GBX2 1 dataset
Motif DE_24h DE_24h-GBX2_MA0890.2 6 bp overlap
GPS2 2 datasets
ChIP hMADS_D0_E GSE152517.GPS2.hMADS_D0_E 187 bp overlap
ChIP hMADS_D0_E GSE152517.GPS2.hMADS_D0_E 149 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 285 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 62 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 107 bp overlap
HESX1 1 dataset
Motif DE_24h DE_24h-HESX1_MA0894.2 6 bp overlap
HNF4A 1 dataset
Motif DE_24h DE_24h-HNF4A_MA0114.5 9 bp overlap
HNF4G 1 dataset
Motif DE_24h DE_24h-HNF4G_MA0484.3 9 bp overlap
HOXA5 1 dataset
Motif DE_24h DE_24h-HOXA5_MA0158.2 8 bp overlap
HOXA6 1 dataset
Motif DE_24h DE_24h-HOXA6_MA1497.2 7 bp overlap
HOXA7 1 dataset
Motif DE_24h DE_24h-HOXA7_MA1498.3 6 bp overlap
HOXB4 1 dataset
Motif DE_24h DE_24h-HOXB4_MA1499.2 6 bp overlap
HOXB6 1 dataset
Motif DE_24h DE_24h-HOXB6_MA1500.2 7 bp overlap
HOXB7 1 dataset
Motif DE_24h DE_24h-HOXB7_MA1501.2 7 bp overlap
HOXB8 1 dataset
Motif DE_24h DE_24h-HOXB8_MA1502.2 7 bp overlap
HOXC4 1 dataset
Motif DE_24h DE_24h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif DE_24h DE_24h-HOXD4_MA1507.2 6 bp overlap
HOXD8 1 dataset
Motif DE_24h DE_24h-HOXD8_MA0910.3 7 bp overlap
Hand1 1 dataset
Motif DE_24h DE_24h-Hand1_MA2123.1 9 bp overlap
Hmx2 1 dataset
Motif DE_24h DE_24h-Hmx2_MA0897.2 15 bp overlap
Hmx3 1 dataset
Motif DE_24h DE_24h-Hmx3_MA0898.2 9 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 836 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 721 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 759 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 945 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 918 bp overlap
KDM1A 1 dataset
ChIP SKNO-1_GSK690 GSE71739.KDM1A.SKNO-1_GSK690 256 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 205 bp overlap
KMT2C 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 537 bp overlap
KMT2D 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 572 bp overlap
LBX2 1 dataset
Motif DE_24h DE_24h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_24h DE_24h-LHX2_MA0700.3 6 bp overlap
MAFK 1 dataset
Motif DE_48h DE_48h-MAFK_MA0496.4 10 bp overlap
MAML3 1 dataset
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 95 bp overlap
MED1 6 datasets
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 289 bp overlap
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 301 bp overlap
ChIP cardiomyocyte_7 GSE85628.MED1.cardiomyocyte_7 310 bp overlap
ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 242 bp overlap
ChIP hMSC-TERT4_osteoblast-D3 GSE113253.MED1.hMSC-TERT4_osteoblast-D3 307 bp overlap
ChIP hMSC-TERT4_osteoblast-D7 GSE113253.MED1.hMSC-TERT4_osteoblast-D7 219 bp overlap
MEF2A 1 dataset
Motif DE_24h DE_24h-MEF2A_MA0052.5 10 bp overlap
MEF2B 1 dataset
Motif DE_24h DE_24h-MEF2B_MA0660.1 12 bp overlap
MEF2C 1 dataset
Motif DE_24h DE_24h-MEF2C_MA0497.2 11 bp overlap
MEF2D 1 dataset
Motif DE_24h DE_24h-MEF2D_MA0773.1 12 bp overlap
MSX1 1 dataset
Motif DE_24h DE_24h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_24h DE_24h-MSX2_MA0708.3 6 bp overlap
MYB 1 dataset
Motif DE_24h DE_24h-MYB_MA0100.4 6 bp overlap
MYC 1 dataset
ChIP HFF_OHT_SHBPTF GSE65544.MYC.HFF_OHT_SHBPTF 160 bp overlap
MYCN 3 datasets
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 457 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 300 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 51 bp overlap
Msx3 1 dataset
Motif DE_24h DE_24h-Msx3_MA0709.2 6 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 411 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 551 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 210 bp overlap
NEUROG2 5 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 347 bp overlap
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 407 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 397 bp overlap
ChIP MRC-5_N_02DPT GSE75910.NEUROG2.MRC-5_N_02DPT 321 bp overlap
ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 229 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 298 bp overlap
NFKB2 1 dataset
ChIP L1236 GSE63736.NFKB2.L1236 153 bp overlap
NKX2-5 1 dataset
Motif DE_24h DE_24h-NKX2-5_MA0063.3 7 bp overlap
NKX6-3 1 dataset
Motif DE_24h DE_24h-NKX6-3_MA1530.2 8 bp overlap
NR1D1 1 dataset
Motif DE_36h DE_36h-NR1D1_MA1531.2 14 bp overlap
NR1D2 1 dataset
Motif DE_36h DE_36h-NR1D2_MA1532.2 15 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 696 bp overlap
Nobox 1 dataset
Motif DE_24h DE_24h-Nobox_MA0125.2 6 bp overlap
PHOX2A 1 dataset
Motif DE_24h DE_24h-PHOX2A_MA0713.1 11 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 864 bp overlap
PLAGL2 1 dataset
Motif DE_24h DE_24h-PLAGL2_MA1548.2 8 bp overlap
POLR2A 1 dataset
ChIP stomach ENCFF820WZN 345 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 691 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 629 bp overlap
POU6F1 1 dataset
Motif DE_24h DE_24h-POU6F1_MA1549.2 7 bp overlap
POU6F2 1 dataset
Motif DE_24h DE_24h-POU6F2_MA0793.2 9 bp overlap
Pax7 1 dataset
Motif DE_24h DE_24h-Pax7_MA0680.3 10 bp overlap
Plagl1 1 dataset
Motif DE_36h DE_36h-Plagl1_MA1615.2 8 bp overlap
RAX 1 dataset
Motif DE_24h DE_24h-RAX_MA0718.2 6 bp overlap
RELA 14 datasets
ChIP HAEC_IL1b_4h GSE89970.RELA.HAEC_IL1b_4h 150 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 301 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 355 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 243 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 259 bp overlap
ChIP aortic-endothelial-cell_IL1B_D3 GSE139377.RELA.aortic-endothelial-cell_IL1B_D3 195 bp overlap
ChIP aortic-endothelial-cell_IL1B_D33 GSE139377.RELA.aortic-endothelial-cell_IL1B_D33 200 bp overlap
ChIP aortic-endothelial-cell_IL1B_D35 GSE139377.RELA.aortic-endothelial-cell_IL1B_D35 218 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 326 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 220 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 355 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 219 bp overlap
ChIP aortic-endothelial-cell_IL1B_D6 GSE139377.RELA.aortic-endothelial-cell_IL1B_D6 199 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 355 bp overlap
RFX7 1 dataset
Motif DE_48h DE_48h-RFX7_MA1554.2 8 bp overlap
RUVBL2 1 dataset
ChIP U2OS_cordycepin GSE130507.RUVBL2.U2OS_cordycepin 304 bp overlap
SMAD2 1 dataset
Motif DE_24h DE_24h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 945 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 945 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 725 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 907 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 945 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 945 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 925 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 140 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 194 bp overlap
SMARCA4 6 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 756 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 218 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 168 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 622 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 322 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 258 bp overlap
SMARCC1 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 463 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 696 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 352 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 913 bp overlap
SPIC 1 dataset
Motif DE_24h DE_24h-SPIC_MA0687.2 13 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 462 bp overlap
STAT3 1 dataset
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 234 bp overlap
Stat6 1 dataset
Motif DE_24h DE_24h-Stat6_MA0520.2 10 bp overlap
T 3 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 232 bp overlap
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 194 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 310 bp overlap
TBP 1 dataset
Motif DE_24h DE_24h-TBP_MA0108.3 7 bp overlap
TBX5 6 datasets
ChIP G296S GSE85628.TBX5.G296S 201 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 201 bp overlap
ChIP G296S_4 GSE85628.TBX5.G296S_4 115 bp overlap
ChIP G296S_4 GSE85628.TBX5.G296S_4 244 bp overlap
ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 269 bp overlap
ChIP cardiomyocyte_7 GSE85628.TBX5.cardiomyocyte_7 199 bp overlap
TCF4 2 datasets
ChIP SH-SY5Y GSE96915.TCF4.SH-SY5Y 108 bp overlap
ChIP SK-N-SH ENCFF270OWF 104 bp overlap
TEAD1 2 datasets
Motif DE_24h DE_24h-TEAD1_MA0090.4 9 bp overlap
ChIP MSTO GSE68170.TEAD1.MSTO 214 bp overlap
TEAD3 1 dataset
Motif DE_24h DE_24h-TEAD3_MA0808.1 8 bp overlap
TEAD4 6 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 516 bp overlap
ChIP BE2C GSE84389.TEAD4.BE2C 114 bp overlap
Motif DE_24h DE_24h-TEAD4_MA0809.3 8 bp overlap
ChIP PC-9_1DF GSE131687.TEAD4.PC-9_1DF 306 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 516 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 114 bp overlap
THRB 1 dataset
ChIP Hep-G2 ENCSR430JGJ.THRB.Hep-G2 211 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH ENCFF182EBB 126 bp overlap
VDR 1 dataset
ChIP THP-1_1d_1-25-OH-2D3 GSE89431.VDR.THP-1_1d_1-25-OH-2D3 252 bp overlap
YY1 1 dataset
ChIP HCT-116 ENCSR000BNX.YY1.HCT-116 89 bp overlap
ZNF136 1 dataset
Motif DE_24h DE_24h-ZNF136_MA1588.1 15 bp overlap
ZNF264 3 datasets
ChIP HEK293 GSE76494.ZNF264.HEK293 283 bp overlap
ChIP Hep-G2 ENCSR248BVU.ZNF264.Hep-G2 284 bp overlap
ChIP HepG2 ENCFF453WJV 387 bp overlap
ZNF282 1 dataset
Motif DE_36h DE_36h-ZNF282_MA1154.2 15 bp overlap
ZNF416 1 dataset
Motif DE_24h DE_24h-ZNF416_MA1979.2 10 bp overlap
ZNF528 1 dataset
Motif DE_24h DE_24h-ZNF528_MA1597.1 17 bp overlap
ZNF547 1 dataset
Motif DE_24h DE_24h-ZNF547_MA2334.1 13 bp overlap
ZNF574 1 dataset
Motif DE_24h DE_24h-ZNF574_MA1982.2 14 bp overlap
ZNF692 1 dataset
Motif DE_24h DE_24h-ZNF692_MA1986.2 8 bp overlap
Zic2 2 datasets
Motif DE_24h DE_24h-Zic2_MA1629.2 9 bp overlap
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap