chr1 : 148,303,450 – 148,304,082
632 bp 89 TFs 4 linked genes
This 632 bp open chromatin element is linked to 4 target genes and is bound by 89 transcription factors.
Linked Genes
4 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC01138 31.3 kb Distal Multiome
ENSG00000227733 56.6 kb Distal Multiome
ENSG00000291232 98.8 kb Distal Multiome
NBPF11 151.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:148,298,450 – 148,309,082
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
89 transcription factors
Source
Cell type
AFF4 2 datasets
ChIP HeLa_DOX_EGF GSE40632.AFF4.HeLa_DOX_EGF 160 bp overlap
ChIP HeLa_EGF GSE40632.AFF4.HeLa_EGF 216 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 521 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 195 bp overlap
ATF3 2 datasets
ChIP A-549 ENCSR000BPS.ATF3.A-549 314 bp overlap
ChIP HCT116 ENCFF088WVX 274 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 197 bp overlap
BCL3 1 dataset
ChIP A-549 ENCSR000BQH.BCL3.A-549 272 bp overlap
BCOR 2 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 353 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 397 bp overlap
BDP1 1 dataset
ChIP IMR-90 GSE47849.BDP1.IMR-90 108 bp overlap
BORCS8-MEF2B,MEF2B 1 dataset
ChIP GM12878 ENCFF427QAI 136 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 301 bp overlap
BRD2 3 datasets
ChIP NCI-H23 GSE113714.BRD2.NCI-H23 276 bp overlap
ChIP SUM159PT_DMSO GSE116879.BRD2.SUM159PT_DMSO 260 bp overlap
ChIP SUM159PT_MGSK2801 GSE116879.BRD2.SUM159PT_MGSK2801 256 bp overlap
BRD3 1 dataset
ChIP U-87MG_GBM GSE99171.BRD3.U-87MG_GBM 137 bp overlap
BRD4 21 datasets
ChIP BE2C GSE80151.BRD4.BE2C 206 bp overlap
ChIP CLL_patient1_4h_CpG GSE109411.BRD4.CLL_patient1_4h_CpG 248 bp overlap
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 121 bp overlap
ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 445 bp overlap
ChIP Hs-352-Sk GSE83725.BRD4.Hs-352-Sk 242 bp overlap
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.BRD4.Hs-352-Sk_PAX3-FOXO1-vector 230 bp overlap
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 210 bp overlap
ChIP IMR-90_SENES GSE74238.BRD4.IMR-90_SENES 284 bp overlap
ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 146 bp overlap
ChIP SGBS_TNF GSE64233.BRD4.SGBS_TNF 157 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 206 bp overlap
ChIP SUM159PT_DMSO_24h GSE87418.BRD4.SUM159PT_DMSO_24h 181 bp overlap
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 278 bp overlap
ChIP SUM159PT_Dox_48h GSE87418.BRD4.SUM159PT_Dox_48h 293 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 432 bp overlap
ChIP SUM159PT_shMYC_DMSO_48h GSE87418.BRD4.SUM159PT_shMYC_DMSO_48h 390 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 248 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 198 bp overlap
ChIP hESC GSE33281.BRD4.hESC 82 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 281 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 256 bp overlap
BRF1 2 datasets
ChIP H9 GSE94418.BRF1.H9 259 bp overlap
ChIP H9_Activin GSE94418.BRF1.H9_Activin 190 bp overlap
CBFA2T2 1 dataset
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 74 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 255 bp overlap
CDK8 2 datasets
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 103 bp overlap
ChIP leiomyoma_PT916 GSE128230.CDK8.leiomyoma_PT916 52 bp overlap
CDK9 2 datasets
ChIP MM1-S_DMSO GSE42161.CDK9.MM1-S_DMSO 365 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 167 bp overlap
CEBPB 1 dataset
ChIP hMSC GSE68864.CEBPB.hMSC 210 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 184 bp overlap
E2F1 2 datasets
ChIP HeLa GSE22478.E2F1.HeLa 214 bp overlap
ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 130 bp overlap
E2F6 4 datasets
ChIP A-549 ENCSR000BTC.E2F6.A-549 256 bp overlap
ChIP H1 ENCFF785DWK 443 bp overlap
ChIP H1 ENCFF785DWK 424 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 290 bp overlap
ELF1 1 dataset
ChIP A-549 ENCSR000BPT.ELF1.A-549 287 bp overlap
ELF3 1 dataset
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 322 bp overlap
ELL2 3 datasets
ChIP HeLa GSE40632.ELL2.HeLa 287 bp overlap
ChIP HeLa_DOX_EGF GSE40632.ELL2.HeLa_DOX_EGF 179 bp overlap
ChIP HeLa_EGF GSE40632.ELL2.HeLa_EGF 235 bp overlap
EP300 3 datasets
ChIP A-549 ENCSR000BPW.EP300.A-549 269 bp overlap
ChIP pulmonary-artery_endothelial-cell_siCtrl GSE89786.EP300.pulmonary-artery_endothelial-cell_siCtrl 272 bp overlap
ChIP pulmonary-artery_endothelial-cell_siPFKFB3 GSE89786.EP300.pulmonary-artery_endothelial-cell_siPFKFB3 239 bp overlap
ETS1 1 dataset
ChIP A-549 ENCSR000BPU.ETS1.A-549 314 bp overlap
FOS 3 datasets
ChIP IMR-90 ENCFF179EDA 238 bp overlap
ChIP IMR-90 ENCSR124AIG.FOS.IMR-90 246 bp overlap
ChIP leiomyoma_PT916 GSE128230.FOS.leiomyoma_PT916 65 bp overlap
FOSL2 2 datasets
ChIP A-549 ENCSR000BQO.FOSL2.A-549 263 bp overlap
ChIP HFOB_DIFF GSE82295.FOSL2.HFOB_DIFF 300 bp overlap
GABPA 1 dataset
ChIP A-549 ENCSR000BPY.GABPA.A-549 323 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 117 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 535 bp overlap
HMGA2 1 dataset
ChIP A549 ENCFF624CAQ 231 bp overlap
IRF4 1 dataset
ChIP U266 GSE142493.IRF4.U266 154 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 369 bp overlap
JUN 1 dataset
ChIP Karpas-299 GSE151413.JUN.Karpas-299 388 bp overlap
KDM4A 3 datasets
ChIP WA01 ENCSR000AVC.KDM4A.WA01 262 bp overlap
ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 53 bp overlap
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 170 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 232 bp overlap
KLF4 1 dataset
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 187 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 93 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 310 bp overlap
MAX 16 datasets
ChIP A-549 ENCSR000BTJ.MAX.A-549 378 bp overlap
ChIP A-549 ENCSR000DYG.MAX.A-549 118 bp overlap
ChIP A549 ENCFF310XGQ 351 bp overlap
ChIP A549 ENCFF985GDG 341 bp overlap
ChIP H1 ENCFF914VQY 357 bp overlap
ChIP HCT-116 ENCSR000BSH.MAX.HCT-116 150 bp overlap
ChIP HCT116 ENCFF810LEN 424 bp overlap
ChIP P493-6 GSE36354.MAX.P493-6 305 bp overlap
ChIP P493-6 GSE42262.MAX.P493-6 355 bp overlap
ChIP P493-6_24HR GSE125863.MAX.P493-6_24HR 371 bp overlap
ChIP P493-6_4HR GSE125863.MAX.P493-6_4HR 138 bp overlap
ChIP P493-6_CMYC_1H GSE36354.MAX.P493-6_CMYC_1H 301 bp overlap
ChIP P493-6_CMYC_24H GSE36354.MAX.P493-6_CMYC_24H 242 bp overlap
ChIP SK-N-SH ENCFF285LXR 377 bp overlap
ChIP SK-N-SH ENCSR000BVD.MAX.SK-N-SH 231 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 187 bp overlap
MED1 5 datasets
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 205 bp overlap
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 225 bp overlap
ChIP U-87MG GSE36354.MED1.U-87MG 240 bp overlap
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 240 bp overlap
ChIP hMSC-TERT4_D3 GSE104537.MED1.hMSC-TERT4_D3 185 bp overlap
MED12 1 dataset
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 93 bp overlap
MED26 2 datasets
ChIP HCT-116 GSE121355.MED26.HCT-116 282 bp overlap
ChIP HCT-116_aux GSE121355.MED26.HCT-116_aux 278 bp overlap
MGA 3 datasets
ChIP A-549 GSE112188.MGA.A-549 275 bp overlap
ChIP A-549_MGA-OE GSE112188.MGA.A-549_MGA-OE 391 bp overlap
ChIP A-549_empty GSE112188.MGA.A-549_empty 270 bp overlap
MXI1 1 dataset
ChIP neural cell ENCFF623HQN 490 bp overlap
MYC 13 datasets
ChIP A-549 GSE112188.MYC.A-549 169 bp overlap
ChIP A549 ENCFF722CWN 381 bp overlap
ChIP BJ_INDUCED GSE36570.MYC.BJ_INDUCED 222 bp overlap
ChIP HeLa GSE44672.MYC.HeLa 278 bp overlap
ChIP MM1-S_DMSO GSE36354.MYC.MM1-S_DMSO 309 bp overlap
ChIP P493-6 GSE77061.MYC.P493-6 361 bp overlap
ChIP P493-6_MST-312 GSE77061.MYC.P493-6_MST-312 128 bp overlap
ChIP P493-6_SHCTR GSE60223.MYC.P493-6_SHCTR 258 bp overlap
ChIP P493-6_SHTERC GSE60223.MYC.P493-6_SHTERC 141 bp overlap
ChIP P493-6_scramble-shRNA GSE101853.MYC.P493-6_scramble-shRNA 244 bp overlap
ChIP U-87MG GSE36354.MYC.U-87MG 298 bp overlap
ChIP endothelial cell of umbilical vein ENCFF537XOZ 191 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DLU.MYC.endothelial_umbilical-vein 129 bp overlap
MYCN 5 datasets
ChIP BE2C GSE80151.MYCN.BE2C 265 bp overlap
ChIP SH-EP_MYCNER_plusOHT GSE111905.MYCN.SH-EP_MYCNER_plusOHT 90 bp overlap
ChIP SH-EP_pRRL-MYCN GSE111905.MYCN.SH-EP_pRRL-MYCN 79 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 283 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 265 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 132 bp overlap
NR2F2 1 dataset
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 368 bp overlap
NR3C1 3 datasets
ChIP A-549 ENCSR000BHG.NR3C1.A-549 158 bp overlap
ChIP A-549 ENCSR000BHF.NR3C1.A-549 287 bp overlap
ChIP A-549 ENCSR000BHE.NR3C1.A-549 180 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 245 bp overlap
PGR 3 datasets
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 317 bp overlap
ChIP myometrium_TP1 GSE137550.PGR.myometrium_TP1 216 bp overlap
ChIP myometrium_TP2 GSE137550.PGR.myometrium_TP2 177 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 239 bp overlap
POLR2A 9 datasets
ChIP GM23338 ENCFF450WCS 204 bp overlap
ChIP H1 ENCFF770YBQ 471 bp overlap
ChIP H1 ENCFF770YBQ 389 bp overlap
ChIP esophagus muscularis mucosa ENCFF759BBR 114 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 310 bp overlap
ChIP sigmoid colon ENCFF754JQR 214 bp overlap
ChIP stomach ENCFF278MYS 97 bp overlap
ChIP uterus ENCFF566ZPY 203 bp overlap
ChIP vagina ENCFF305NWS 273 bp overlap
POLR3A 1 dataset
ChIP HeLa-S3 ENCFF777TAS 236 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 104 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 276 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 268 bp overlap
RELA 1 dataset
ChIP KB_IL GSE52469.RELA.KB_IL 107 bp overlap
REST 1 dataset
ChIP A-549 ENCSR000BQP.REST.A-549 274 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 538 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 210 bp overlap
SIN3A 5 datasets
ChIP A-549 ENCSR000BRM.SIN3A.A-549 316 bp overlap
ChIP A549 ENCFF752ATT 534 bp overlap
ChIP H1 ENCFF042ZSL 309 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 226 bp overlap
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 118 bp overlap
SIX5 1 dataset
ChIP A-549 ENCSR000BRL.SIX5.A-549 206 bp overlap
SMAD3 3 datasets
ChIP H69_4Veh GSE145250.SMAD3.H69_4Veh 151 bp overlap
ChIP H69_5TGF GSE145250.SMAD3.H69_5TGF 151 bp overlap
ChIP H69_5Veh GSE145250.SMAD3.H69_5Veh 271 bp overlap
SMARCA4 5 datasets
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 88 bp overlap
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 259 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 518 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 400 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 283 bp overlap
SMARCB1 2 datasets
ChIP proliferating-human-fibroblast_ASO_Ctrl GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_Ctrl 308 bp overlap
ChIP proliferating-human-fibroblast_ASO_LINC GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_LINC 304 bp overlap
SNAI2 1 dataset
ChIP PC-9_2DF GSE131687.SNAI2.PC-9_2DF 299 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 92 bp overlap
SP1 1 dataset
ChIP A-549 ENCSR000BPE.SP1.A-549 310 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 309 bp overlap
SREBF2 1 dataset
ChIP A549 ENCFF252BOY 125 bp overlap
SREBP2 2 datasets
ChIP monocyte GSE129202.SREBP2.monocyte 277 bp overlap
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 413 bp overlap
STAT3 1 dataset
ChIP monocyte_IFNg-LPS GSE120943.STAT3.monocyte_IFNg-LPS 139 bp overlap
SUPT5H 2 datasets
ChIP HeLa GSE125534.SUPT5H.HeLa 341 bp overlap
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 278 bp overlap
TAF1 2 datasets
ChIP A-549 ENCSR000BPF.TAF1.A-549 293 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 269 bp overlap
TBP 19 datasets
ChIP GM12878 ENCFF571OXR 280 bp overlap
ChIP H1 ENCFF859IIO 189 bp overlap
ChIP HBTEC_MOI20_12hpi GSE116772.TBP.HBTEC_MOI20_12hpi 139 bp overlap
ChIP HBTEC_MOI20_18hpi GSE116772.TBP.HBTEC_MOI20_18hpi 262 bp overlap
ChIP HBTEC_MOI5_dl312_18hpi GSE116772.TBP.HBTEC_MOI5_dl312_18hpi 91 bp overlap
ChIP HeLa-S3 ENCFF715NNJ 168 bp overlap
ChIP HeLa-S3 ENCSR000EDD.TBP.HeLa-S3 201 bp overlap
ChIP K-562 ENCSR000EHA.TBP.K-562 106 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 357 bp overlap
ChIP hESC GSE122298.TBP.hESC 401 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 388 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 100 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 401 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 52 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 379 bp overlap
ChIP hiPSC_WTa_RNase-neg GSE128135.TBP.hiPSC_WTa_RNase-neg 263 bp overlap
ChIP hiPSC_WTa_RNase-pos GSE128135.TBP.hiPSC_WTa_RNase-pos 220 bp overlap
ChIP hiPSC_WTb_RNase-neg GSE128135.TBP.hiPSC_WTb_RNase-neg 221 bp overlap
ChIP hiPSC_WTb_RNase-pos GSE128135.TBP.hiPSC_WTb_RNase-pos 223 bp overlap
TCF12 1 dataset
ChIP A-549 ENCSR000BQQ.TCF12.A-549 289 bp overlap
TEAD4 3 datasets
ChIP A-549 ENCSR000BUD.TEAD4.A-549 132 bp overlap
ChIP A549 ENCFF243FTL 170 bp overlap
ChIP SK-N-SH ENCSR000BUQ.TEAD4.SK-N-SH 189 bp overlap
TERT 1 dataset
ChIP P493-6 GSE77146.TERT.P493-6 151 bp overlap
USF1 4 datasets
ChIP A-549 ENCSR000BPV.USF1.A-549 251 bp overlap
ChIP H1 ENCFF090WVU 204 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 125 bp overlap
ChIP WTC11 ENCFF699QGS 285 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 306 bp overlap
YY1 1 dataset
ChIP A-549 ENCSR000BPM.YY1.A-549 268 bp overlap
YY1AP1 1 dataset
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 260 bp overlap
ZBTB33 2 datasets
ChIP A-549 ENCSR000BPZ.ZBTB33.A-549 309 bp overlap
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 400 bp overlap
ZNF143 2 datasets
ChIP WA09 GSE105028.ZNF143.WA09 211 bp overlap
ChIP WTC11 ENCFF249JUK 485 bp overlap
ZNF26 1 dataset
ChIP HEK293 ENCSR028EGI.ZNF26.HEK293 158 bp overlap
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