chr6 : 33,828,845 33,829,529
684 bp 97 TFs 4 linked genes
This 684 bp open chromatin element is linked to 4 target genes and is bound by 97 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
LEMD2 39.8 kb Distal Multiome
UQCC2 117.3 kb Distal Multiome
ITPR3 207.6 kb Distal Multiome
BAK1 248.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:33,823,845 – 33,834,529
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
97 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 50 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 238 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 425 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 172 bp overlap
BRD2 1 dataset
ChIP THP-1_iBET-BD2 GSE138084.BRD2.THP-1_iBET-BD2 251 bp overlap
BRD4 5 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 228 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 664 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 124 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 101 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 621 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 132 bp overlap
ChIP K562 ENCFF673OEZ 235 bp overlap
CDK8 2 datasets
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 57 bp overlap
ChIP myometrium_PT1063 GSE128230.CDK8.myometrium_PT1063 87 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 185 bp overlap
CTCF 36 datasets
ChIP AG04449 ENCFF248MBD 179 bp overlap
ChIP AG09309 ENCFF478XPS 252 bp overlap
ChIP H9 ENCFF152GTF 370 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 128 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 177 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 125 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 180 bp overlap
ChIP U-937 ERP008568.CTCF.U-937 156 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 215 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 190 bp overlap
ChIP brain ENCFF163BBN 591 bp overlap
ChIP brain ENCFF163BBN 413 bp overlap
ChIP brain ENCFF685VRG 492 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 268 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 60 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 162 bp overlap
ChIP colon_transverse ENCSR833FWC.CTCF.colon_transverse 353 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 305 bp overlap
ChIP fibroblast of the aortic adventitia ENCFF639DMR 217 bp overlap
ChIP fibroblast_AORTIC_ADVENTITIA ENCSR000DPY.CTCF.fibroblast_AORTIC_ADVENTITIA 122 bp overlap
ChIP fibroblast_FORESKIN ENCSR000DUH.CTCF.fibroblast_FORESKIN 147 bp overlap
ChIP fibroblast_PULMONARY_ARTERY ENCSR000DUX.CTCF.fibroblast_PULMONARY_ARTERY 131 bp overlap
ChIP fibroblast_SKIN_LEG ENCSR000DPG.CTCF.fibroblast_SKIN_LEG 110 bp overlap
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 578 bp overlap
ChIP gastroesophageal-sphincter ENCSR186NVR.CTCF.gastroesophageal-sphincter 335 bp overlap
ChIP gastroesophageal-sphincter ENCSR146BGM.CTCF.gastroesophageal-sphincter 228 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 128 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 230 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 284 bp overlap
ChIP sigmoid colon ENCFF397ZZF 424 bp overlap
ChIP sigmoid-colon ENCSR857RJQ.CTCF.sigmoid-colon 370 bp overlap
ChIP uterus ENCFF466ZUR 310 bp overlap
ChIP uterus ENCFF837OEY 318 bp overlap
ChIP uterus ENCSR527TPP.CTCF.uterus 232 bp overlap
ChIP uterus ENCSR684PGO.CTCF.uterus 243 bp overlap
ChIP uterus ENCSR392SFJ.CTCF.uterus 153 bp overlap
E2F6 3 datasets
ChIP H1 ENCFF785DWK 144 bp overlap
ChIP H1 ENCFF785DWK 451 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 481 bp overlap
EGR1 1 dataset
Motif DE_24h DE_24h-EGR1_MA0162.5 10 bp overlap
EGR2 1 dataset
Motif DE_24h DE_24h-EGR2_MA0472.2 11 bp overlap
EOMES 2 datasets
Motif DE_24h DE_24h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 392 bp overlap
EP300 1 dataset
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 231 bp overlap
ESR1 1 dataset
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 95 bp overlap
EZH2 2 datasets
ChIP DND41 ENCSR000ASW.EZH2.DND41 72 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 247 bp overlap
FOXP1 1 dataset
ChIP WTC11 ENCFF338WGC 402 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 186 bp overlap
GATA2 3 datasets
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 198 bp overlap
ChIP SK-N-SH ENCFF764OZD 279 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 156 bp overlap
GATA6 3 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 480 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 349 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 513 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 187 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 257 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 684 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 362 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 188 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 271 bp overlap
HCFC1R1 1 dataset
ChIP cartilage GSE100311.HCFC1R1.cartilage 173 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 84 bp overlap
Isl1 1 dataset
Motif DE_24h DE_24h-Isl1_MA1608.2 7 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 314 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 488 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 485 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 332 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 497 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 164 bp overlap
KLF12 1 dataset
Motif DE_24h DE_24h-KLF12_MA0742.2 9 bp overlap
KLF15 1 dataset
ChIP HEK293 GSE76494.KLF15.HEK293 94 bp overlap
KLF17 1 dataset
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 154 bp overlap
KLF5 1 dataset
ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 171 bp overlap
MAX 3 datasets
ChIP H1 ENCFF914VQY 109 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 289 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 256 bp overlap
MAZ 2 datasets
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 147 bp overlap
ChIP HEK293 GSE76494.MAZ.HEK293 130 bp overlap
MED1 2 datasets
ChIP VCaP GSE148358.MED1.VCaP 186 bp overlap
ChIP VCaP_R1881 GSE148358.MED1.VCaP_R1881 251 bp overlap
MEIS1 1 dataset
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
Motif DE_24h DE_24h-MEIS2_MA0774.1 8 bp overlap
MEIS3 1 dataset
Motif DE_24h DE_24h-MEIS3_MA0775.2 7 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 177 bp overlap
MYCN 5 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 363 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 217 bp overlap
ChIP Kelly GSE94782.MYCN.Kelly 106 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 504 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 269 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 304 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 280 bp overlap
NELFE 1 dataset
ChIP K-562_HS GSE112379.NELFE.K-562_HS 89 bp overlap
NEUROG2 3 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 647 bp overlap
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 143 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 632 bp overlap
NKX2-4 1 dataset
Motif DE_24h DE_24h-NKX2-4_MA2003.2 8 bp overlap
NKX6-3 1 dataset
Motif DE_24h DE_24h-NKX6-3_MA1530.2 8 bp overlap
NR3C1 1 dataset
ChIP T-47D GSE126859.NR3C1.T-47D 128 bp overlap
PGR 3 datasets
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 147 bp overlap
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 460 bp overlap
ChIP myometrium_TP1 GSE137550.PGR.myometrium_TP1 193 bp overlap
POLR2A 5 datasets
ChIP sigmoid colon ENCFF101ILL 321 bp overlap
ChIP sigmoid colon ENCFF725QFT 342 bp overlap
ChIP sigmoid colon ENCFF748YVT 270 bp overlap
ChIP sigmoid colon ENCFF754JQR 115 bp overlap
ChIP transverse colon ENCFF607LKE 334 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 445 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 288 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 596 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 260 bp overlap
RAD21 2 datasets
ChIP SK-N-SH ENCFF747MAS 240 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 130 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 208 bp overlap
REST 4 datasets
ChIP HEK293 ENCSR896UBV.REST.HEK293 85 bp overlap
ChIP SK-N-SH ENCFF861MKH 245 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 208 bp overlap
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 158 bp overlap
SIN3A 2 datasets
ChIP H1 ENCFF042ZSL 377 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 120 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 279 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 514 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 622 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 590 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 461 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 583 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 624 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 555 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 397 bp overlap
SMARCA4 3 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 620 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 295 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 179 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 312 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 239 bp overlap
SP1 1 dataset
ChIP HEK293 GSE76494.SP1.HEK293 95 bp overlap
SP2 1 dataset
ChIP HEK293 ENCSR807LQP.SP2.HEK293 55 bp overlap
SP3 1 dataset
ChIP HEK293 ENCSR141PZA.SP3.HEK293 130 bp overlap
SP4 1 dataset
ChIP HEK293 GSE76494.SP4.HEK293 163 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 170 bp overlap
STAT1 1 dataset
ChIP CD14_LPS GSE43036.STAT1.CD14_LPS 138 bp overlap
SUZ12 2 datasets
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 239 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 213 bp overlap
Stat6 1 dataset
Motif DE_24h DE_24h-Stat6_MA0520.2 10 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 358 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 408 bp overlap
TBR1 1 dataset
Motif DE_24h DE_24h-TBR1_MA0802.2 9 bp overlap
TBX2 2 datasets
Motif DE_24h DE_24h-TBX2_MA0688.2 9 bp overlap
ChIP Kelly GSE94822.TBX2.Kelly 145 bp overlap
TBX3 1 dataset
Motif DE_24h DE_24h-TBX3_MA1566.3 9 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 256 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 172 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 565 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 618 bp overlap
TRIM25 1 dataset
ChIP MDA-MB-231 GSE79588.TRIM25.MDA-MB-231 180 bp overlap
WT1 1 dataset
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 140 bp overlap
XRCC5 1 dataset
ChIP K-562 GSE120104.XRCC5.K-562 169 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 462 bp overlap
ZBTB12 1 dataset
Motif DE_24h DE_24h-ZBTB12_MA1649.2 7 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 131 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 255 bp overlap
ZNF281 1 dataset
ChIP K-562 GSE121133.ZNF281.K-562 198 bp overlap
ZNF3 1 dataset
ChIP K-562 ENCSR195QFV.ZNF3.K-562 166 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 123 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 163 bp overlap
ZNF652 1 dataset
Motif DE_24h DE_24h-ZNF652_MA1657.2 9 bp overlap
ZNF669 1 dataset
Motif DE_24h DE_24h-ZNF669_MA1985.1 15 bp overlap