chr6 : 5,411,999 5,412,445
446 bp 142 TFs 0 linked genes
This 446 bp open chromatin element has no linked target genes and is bound by 142 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:5,406,999 – 5,417,445
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
142 transcription factors
Source
Cell type
ALX3 1 dataset
Motif ES_0h ES_0h-ALX3_MA0634.2 6 bp overlap
ARGFX 1 dataset
Motif ES_0h ES_0h-ARGFX_MA1463.2 8 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 185 bp overlap
ATF4 1 dataset
Motif ES_0h ES_0h-ATF4_MA0833.3 10 bp overlap
Alx1 1 dataset
Motif ES_0h ES_0h-Alx1_MA0854.2 8 bp overlap
Alx4 1 dataset
Motif ES_0h ES_0h-Alx4_MA0853.2 12 bp overlap
Arid3b 1 dataset
Motif ES_0h ES_0h-Arid3b_MA0601.2 7 bp overlap
Arx 1 dataset
Motif ES_0h ES_0h-Arx_MA0874.2 10 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 230 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 366 bp overlap
BRD4 2 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 216 bp overlap
ChIP SUM159PT_KO GSE131097.BRD4.SUM159PT_KO 166 bp overlap
CEBPB 2 datasets
ChIP H1 ENCFF871PTR 261 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 156 bp overlap
CEBPG 1 dataset
Motif ES_0h ES_0h-CEBPG_MA1636.2 10 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 182 bp overlap
ChIP H1 ENCFF126NLU 385 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 239 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 152 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 446 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 422 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 263 bp overlap
DRGX 1 dataset
Motif ES_0h ES_0h-DRGX_MA1481.2 6 bp overlap
DUX4 1 dataset
Motif ES_0h ES_0h-DUX4_MA0468.1 11 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 156 bp overlap
ELF1 1 dataset
Motif ES_0h ES_0h-ELF1_MA0473.4 9 bp overlap
ELF3 1 dataset
Motif ES_0h ES_0h-ELF3_MA0640.3 9 bp overlap
ELL2 1 dataset
ChIP HeLa_DOX_EGF GSE40632.ELL2.HeLa_DOX_EGF 254 bp overlap
EMX1 1 dataset
Motif ES_0h ES_0h-EMX1_MA0612.3 6 bp overlap
EMX2 1 dataset
Motif ES_0h ES_0h-EMX2_MA0886.2 6 bp overlap
EN1 1 dataset
Motif ES_0h ES_0h-EN1_MA0027.3 6 bp overlap
EN2 1 dataset
Motif ES_0h ES_0h-EN2_MA0642.3 7 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000AUQ.EP300.WA01 162 bp overlap
ESR1 4 datasets
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 216 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 328 bp overlap
ChIP MCF-7_Veh GSE93510.ESR1.MCF-7_Veh 285 bp overlap
ChIP MCF-7_Veh GSE67295.ESR1.MCF-7_Veh 184 bp overlap
ESX1 1 dataset
Motif ES_0h ES_0h-ESX1_MA0644.3 7 bp overlap
EVX1 1 dataset
Motif ES_0h ES_0h-EVX1_MA0887.2 6 bp overlap
EVX2 1 dataset
Motif ES_0h ES_0h-EVX2_MA0888.2 6 bp overlap
EZH2 1 dataset
ChIP WA01 ENCSR000ASY.EZH2.WA01 250 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 261 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 246 bp overlap
GBX1 1 dataset
Motif ES_0h ES_0h-GBX1_MA0889.2 7 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 421 bp overlap
GSX1 1 dataset
Motif ES_0h ES_0h-GSX1_MA0892.2 6 bp overlap
GSX2 1 dataset
Motif ES_0h ES_0h-GSX2_MA0893.3 7 bp overlap
HDAC2 2 datasets
ChIP WA01 ENCSR000BNR.HDAC2.WA01 185 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 170 bp overlap
HIC2 1 dataset
Motif ES_0h ES_0h-HIC2_MA0738.2 6 bp overlap
HOXA1 1 dataset
Motif ES_0h ES_0h-HOXA1_MA1495.2 6 bp overlap
HOXA2 1 dataset
Motif ES_0h ES_0h-HOXA2_MA0900.3 6 bp overlap
HOXA3 1 dataset
Motif ES_0h ES_0h-HOXA3_MA2119.1 7 bp overlap
HOXB1 1 dataset
Motif ES_0h ES_0h-HOXB1_MA2093.1 7 bp overlap
HOXB2 1 dataset
Motif ES_0h ES_0h-HOXB2_MA0902.3 6 bp overlap
HOXB3 1 dataset
Motif ES_0h ES_0h-HOXB3_MA0903.2 6 bp overlap
HOXB5 1 dataset
Motif ES_0h ES_0h-HOXB5_MA0904.3 6 bp overlap
HOXC13 1 dataset
Motif ES_0h ES_0h-HOXC13_MA0907.2 9 bp overlap
HOXC8 1 dataset
Motif ES_0h ES_0h-HOXC8_MA1505.2 6 bp overlap
HOXD3 1 dataset
Motif ES_0h ES_0h-HOXD3_MA0912.2 8 bp overlap
ISX 1 dataset
Motif ES_0h ES_0h-ISX_MA0654.2 6 bp overlap
Ikzf3 1 dataset
Motif ES_0h ES_0h-Ikzf3_MA1992.2 9 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 101 bp overlap
LBX1 1 dataset
Motif ES_0h ES_0h-LBX1_MA0618.2 7 bp overlap
LHX5 1 dataset
Motif ES_0h ES_0h-LHX5_MA1519.2 7 bp overlap
LHX6 1 dataset
Motif ES_0h ES_0h-LHX6_MA0658.2 8 bp overlap
LHX9 1 dataset
Motif ES_0h ES_0h-LHX9_MA0701.3 7 bp overlap
LMX1A 1 dataset
Motif ES_0h ES_0h-LMX1A_MA0702.3 7 bp overlap
LMX1B 1 dataset
Motif ES_0h ES_0h-LMX1B_MA0703.3 8 bp overlap
Lhx3 1 dataset
Motif ES_0h ES_0h-Lhx3_MA0135.2 12 bp overlap
Lhx4 1 dataset
Motif ES_0h ES_0h-Lhx4_MA0704.2 6 bp overlap
Lhx8 1 dataset
Motif ES_0h ES_0h-Lhx8_MA0705.2 6 bp overlap
MAFF 1 dataset
Motif ES_0h ES_0h-MAFF_MA0495.4 11 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 343 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 233 bp overlap
MEOX1 1 dataset
Motif ES_0h ES_0h-MEOX1_MA0661.2 7 bp overlap
MEOX2 1 dataset
Motif ES_0h ES_0h-MEOX2_MA0706.2 7 bp overlap
MIXL1 1 dataset
Motif ES_0h ES_0h-MIXL1_MA0662.2 6 bp overlap
MNX1 1 dataset
Motif ES_0h ES_0h-MNX1_MA0707.3 6 bp overlap
MXI1 1 dataset
ChIP WA01 ENCSR000EBR.MXI1.WA01 145 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 136 bp overlap
Mafb 1 dataset
Motif ES_0h ES_0h-Mafb_MA0117.3 11 bp overlap
Mecom 1 dataset
Motif ES_0h ES_0h-Mecom_MA0029.2 11 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 446 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 264 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 395 bp overlap
ChIP hESC GSE18292.NANOG.hESC 213 bp overlap
NFKB1 1 dataset
Motif ES_0h ES_0h-NFKB1_MA0105.4 13 bp overlap
NHLH1 1 dataset
Motif ES_0h ES_0h-NHLH1_MA0048.3 9 bp overlap
NKX6-1 1 dataset
Motif ES_0h ES_0h-NKX6-1_MA0674.2 7 bp overlap
NKX6-2 1 dataset
Motif ES_0h ES_0h-NKX6-2_MA0675.2 6 bp overlap
NOTO 1 dataset
Motif ES_0h ES_0h-NOTO_MA0710.2 7 bp overlap
Olig2 1 dataset
Motif ES_0h ES_0h-Olig2_MA1997.2 6 bp overlap
PAX3 1 dataset
Motif ES_0h ES_0h-PAX3_MA1546.2 14 bp overlap
PAX4 1 dataset
Motif ES_0h ES_0h-PAX4_MA0068.2 8 bp overlap
PDX1 1 dataset
Motif ES_0h ES_0h-PDX1_MA0132.3 6 bp overlap
PHF8 1 dataset
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 136 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 172 bp overlap
POU5F1 5 datasets
ChIP BG03 GSE21614.POU5F1.BG03 271 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 286 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 427 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 423 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 433 bp overlap
POU6F1 1 dataset
Motif ES_0h ES_0h-POU6F1_MA0628.2 6 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 289 bp overlap
PRRX1 1 dataset
Motif ES_0h ES_0h-PRRX1_MA0716.2 6 bp overlap
PRRX2 1 dataset
Motif ES_0h ES_0h-PRRX2_MA0075.4 7 bp overlap
Pou5f1::Sox2 2 datasets
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
RAD21 3 datasets
ChIP RH4 GSE83726.RAD21.RH4 156 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 135 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 166 bp overlap
RARG 1 dataset
Motif ES_0h ES_0h-RARG_MA1553.2 13 bp overlap
RAX2 1 dataset
Motif ES_0h ES_0h-RAX2_MA0717.2 6 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 146 bp overlap
RELB 1 dataset
Motif ES_0h ES_0h-RELB_MA1117.2 7 bp overlap
REST 1 dataset
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 183 bp overlap
SHOX 1 dataset
Motif ES_0h ES_0h-SHOX_MA0630.2 6 bp overlap
SIN3A 6 datasets
ChIP H1 ENCFF042ZSL 446 bp overlap
ChIP H1 ENCFF896IJG 301 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 163 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 182 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 232 bp overlap
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 296 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 265 bp overlap
SMAD2-3 1 dataset
ChIP HGrC1_C134W GSE138496.SMAD2-3.HGrC1_C134W 232 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 222 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 160 bp overlap
SOX10 1 dataset
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 374 bp overlap
SP5 1 dataset
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
Shox2 1 dataset
Motif ES_0h ES_0h-Shox2_MA0720.2 6 bp overlap
TBP 2 datasets
ChIP H1 ENCFF859IIO 377 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 178 bp overlap
TBX20 1 dataset
Motif ES_0h ES_0h-TBX20_MA0689.1 11 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 202 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 314 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 405 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 104 bp overlap
THAP1 1 dataset
Motif ES_0h ES_0h-THAP1_MA0597.3 8 bp overlap
TLX2 1 dataset
Motif ES_0h ES_0h-TLX2_MA1577.2 6 bp overlap
TP53 3 datasets
Motif ES_0h ES_0h-TP53_MA0106.3 18 bp overlap
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 249 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 446 bp overlap
TP63 1 dataset
Motif ES_0h ES_0h-TP63_MA0525.2 18 bp overlap
Tbx6 1 dataset
Motif ES_0h ES_0h-Tbx6_MA1567.3 9 bp overlap
Tcf12 1 dataset
Motif ES_0h ES_0h-Tcf12_MA0521.3 6 bp overlap
Thap11 1 dataset
Motif ES_0h ES_0h-Thap11_MA1573.2 14 bp overlap
Twist2 1 dataset
Motif ES_0h ES_0h-Twist2_MA0633.3 6 bp overlap
UNCX 1 dataset
Motif ES_0h ES_0h-UNCX_MA0721.2 6 bp overlap
VAX1 1 dataset
Motif ES_0h ES_0h-VAX1_MA0722.2 7 bp overlap
VAX2 1 dataset
Motif ES_0h ES_0h-VAX2_MA0723.3 6 bp overlap
VSX1 1 dataset
Motif ES_0h ES_0h-VSX1_MA0725.2 7 bp overlap
VSX2 1 dataset
Motif ES_0h ES_0h-VSX2_MA0726.2 7 bp overlap
Wt1 1 dataset
Motif ES_0h ES_0h-Wt1_MA1627.2 10 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 321 bp overlap
ZBTB43 1 dataset
ChIP WTC11 ENCFF058JUB 339 bp overlap
ZBTB7A 1 dataset
Motif ES_0h ES_0h-ZBTB7A_MA0750.3 9 bp overlap
ZNF143 3 datasets
Motif ES_0h ES_0h-ZNF143_MA0088.2 16 bp overlap
ChIP WA01 ENCSR000EBW.ZNF143.WA01 244 bp overlap
ChIP WTC11 ENCFF249JUK 446 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 318 bp overlap
ZNF214 1 dataset
Motif ES_0h ES_0h-ZNF214_MA1975.2 13 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF528 3 datasets
Motif ES_0h ES_0h-ZNF528_MA1597.1 17 bp overlap
Motif ES_0h ES_0h-ZNF528_MA1597.1 17 bp overlap
ChIP HEK293 GSE76494.ZNF528.HEK293 205 bp overlap
ZNF549 1 dataset
Motif ES_0h ES_0h-ZNF549_MA1728.2 8 bp overlap
mix-a 1 dataset
Motif ES_0h ES_0h-mix-a_MA0621.2 7 bp overlap