chr5 : 170,408,024 170,408,505
481 bp 105 TFs 0 linked genes
This 481 bp open chromatin element has no linked target genes and is bound by 105 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:170,403,024 – 170,413,505
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
105 transcription factors
Source
Cell type
ARNTL 1 dataset
ChIP U2OS_DMOG GSE85096.ARNTL.U2OS_DMOG 192 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 242 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 209 bp overlap
BCL11A 3 datasets
ChIP H1 ENCFF836SSR 177 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 187 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 139 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 197 bp overlap
BRD4 6 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 172 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 51 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 169 bp overlap
ChIP RH4 GSE83726.BRD4.RH4 249 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 200 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 227 bp overlap
CASZ1 2 datasets
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 257 bp overlap
ChIP rhabdomyosarcoma_Trametinib GSE126143.CASZ1.rhabdomyosarcoma_Trametinib 234 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 481 bp overlap
CREBBP 1 dataset
ChIP retina_Hu33 GSE137311.CREBBP.retina_Hu33 227 bp overlap
CRX 4 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 226 bp overlap
ChIP retina_Hu21 GSE137311.CRX.retina_Hu21 220 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 450 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 327 bp overlap
CTCF 4 datasets
ChIP RH4 GSE83726.CTCF.RH4 172 bp overlap
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 167 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 224 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 277 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 246 bp overlap
Crx 2 datasets
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap
EBF1 2 datasets
Motif DE_60h DE_60h-EBF1_MA0154.5 11 bp overlap
Motif DE_72h DE_72h-EBF1_MA0154.5 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 260 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 161 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 323 bp overlap
EZH2 2 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 387 bp overlap
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 230 bp overlap
Ebf4 2 datasets
Motif DE_60h DE_60h-Ebf4_MA2122.1 11 bp overlap
Motif DE_72h DE_72h-Ebf4_MA2122.1 11 bp overlap
FOSL2 1 dataset
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 91 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 481 bp overlap
ChIP DE DE-FOXA2-2 481 bp overlap
GATA2 3 datasets
ChIP SH-SY5Y ENCFF485YIB 309 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 280 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 359 bp overlap
GATA4 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 359 bp overlap
ChIP DE DE-GATA4-1 481 bp overlap
ChIP DE DE-GATA4-2 481 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 407 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 481 bp overlap
ChIP DE DE-GATA6-2 481 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 446 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 481 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 481 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 481 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 481 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 481 bp overlap
GSC 2 datasets
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap
GSC2 2 datasets
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 184 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 354 bp overlap
HDAC2 3 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 227 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 168 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 208 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 208 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 249 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 284 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 219 bp overlap
JUN 6 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 315 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 257 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 241 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 198 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 253 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 229 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 125 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 185 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 253 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 224 bp overlap
MED1 2 datasets
ChIP RH4 GSE83726.MED1.RH4 127 bp overlap
ChIP dopaminergic-neuron_Dopamine_neurons GSE93905.MED1.dopaminergic-neuron_Dopamine_neurons 192 bp overlap
MEF2D 2 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 191 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 217 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 312 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 380 bp overlap
MYB 2 datasets
Motif DE_60h DE_60h-MYB_MA0100.4 6 bp overlap
Motif DE_72h DE_72h-MYB_MA0100.4 6 bp overlap
MYC 2 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 207 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 209 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 151 bp overlap
MYF5 1 dataset
ChIP Rh18 GSE84628.MYF5.Rh18 201 bp overlap
MYOD1 2 datasets
ChIP RH4 GSE83726.MYOD1.RH4 255 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 250 bp overlap
MYOG 2 datasets
ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 214 bp overlap
ChIP RH4 GSE83726.MYOG.RH4 241 bp overlap
NANOG 9 datasets
ChIP H1 ENCFF747ZPQ 237 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 333 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 279 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 209 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 219 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 265 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 227 bp overlap
ChIP hESC GSE20650.NANOG.hESC 157 bp overlap
ChIP hESC GSE18292.NANOG.hESC 131 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 200 bp overlap
OTX1 2 datasets
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap
OTX2 2 datasets
ChIP WTC11 ENCFF634NAO 208 bp overlap
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 378 bp overlap
PITX1 2 datasets
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap
PITX2 2 datasets
Motif DE_60h DE_60h-PITX2_MA1547.2 8 bp overlap
Motif DE_72h DE_72h-PITX2_MA1547.2 8 bp overlap
PITX3 3 datasets
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 327 bp overlap
POLR2A 1 dataset
ChIP H1 ENCFF833NJP 323 bp overlap
POU5F1 6 datasets
ChIP H1 ENCFF698ZAP 182 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 395 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 341 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 193 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 298 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 263 bp overlap
PRDM14 1 dataset
ChIP hESC GSE22767.PRDM14.hESC 222 bp overlap
RAD21 2 datasets
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 258 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 179 bp overlap
RBBP4 3 datasets
ChIP RH5 GSE155861.RBBP4.RH5 168 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 71 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 316 bp overlap
REL 2 datasets
Motif DE_60h DE_60h-REL_MA0101.1 10 bp overlap
Motif DE_72h DE_72h-REL_MA0101.1 10 bp overlap
RELA 2 datasets
Motif DE_60h DE_60h-RELA_MA0107.1 10 bp overlap
Motif DE_72h DE_72h-RELA_MA0107.1 10 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 119 bp overlap
RHOXF1 2 datasets
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 245 bp overlap
RXRA 2 datasets
ChIP H1 ENCFF570NHK 201 bp overlap
ChIP WA01 ENCSR000BJW.RXRA.WA01 181 bp overlap
Rhox11 2 datasets
Motif DE_60h DE_60h-Rhox11_MA0629.2 9 bp overlap
Motif DE_72h DE_72h-Rhox11_MA0629.2 9 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 186 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 423 bp overlap
SIX2 1 dataset
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 183 bp overlap
SMAD2 3 datasets
ChIP endoderm GSE29422.SMAD2.endoderm 134 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 160 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 237 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 230 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 481 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 258 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 267 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 357 bp overlap
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 219 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 214 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 146 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 137 bp overlap
SMARCA4 3 datasets
ChIP NGP GSE134626.SMARCA4.NGP 166 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 142 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 338 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 274 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 321 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR GSE137168.SNAI2.SMS-CTR 146 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 194 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 342 bp overlap
SOX2 2 datasets
ChIP H9 GSE46837.SOX2.H9 177 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 281 bp overlap
SOX8 2 datasets
ChIP RH4 GSE116344.SOX8.RH4 239 bp overlap
ChIP RH4_DMSO-6H GSE116344.SOX8.RH4_DMSO-6H 215 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 203 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 160 bp overlap
SPDEF 1 dataset
Motif DE_60h DE_60h-SPDEF_MA0686.2 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 198 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 214 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 212 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 329 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 316 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 234 bp overlap
TFAP2A 2 datasets
Motif DE_60h DE_60h-TFAP2A_MA0003.5 9 bp overlap
Motif DE_72h DE_72h-TFAP2A_MA0003.5 9 bp overlap
TFAP2C 3 datasets
Motif DE_60h DE_60h-TFAP2C_MA0814.3 9 bp overlap
Motif DE_72h DE_72h-TFAP2C_MA0814.3 9 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 142 bp overlap
YY1 3 datasets
ChIP H1 ENCFF524BTL 303 bp overlap
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 221 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 224 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 279 bp overlap
ZEB1 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 130 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 240 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 220 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 124 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 173 bp overlap
ZNF554 1 dataset
ChIP HEK293 GSE76494.ZNF554.HEK293 227 bp overlap