chr5 : 141,496,077 – 141,496,380
303 bp 99 TFs 1 linked gene
This 303 bp open chromatin element is linked to PCDHGC5 and is bound by 99 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PCDHGC5 7.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:141,491,077 – 141,501,380
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
99 transcription factors
Source
Cell type
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 303 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 235 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 261 bp overlap
BRD4 9 datasets
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.BRD4.Hs-352-Sk_PAX3-FOXO1-vector 289 bp overlap
ChIP Jurkat GSE83777.BRD4.Jurkat 208 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 288 bp overlap
ChIP MOLM-14_CA25 GSE65138.BRD4.MOLM-14_CA25 303 bp overlap
ChIP MOLM-14_IBET GSE65138.BRD4.MOLM-14_IBET 303 bp overlap
ChIP RH4 GSE83726.BRD4.RH4 285 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 194 bp overlap
ChIP SEM GSE83671.BRD4.SEM 79 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 78 bp overlap
CDK8 2 datasets
ChIP MOLM-14 GSE65138.CDK8.MOLM-14 303 bp overlap
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 303 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 303 bp overlap
CHD7 3 datasets
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 270 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 260 bp overlap
ChIP hiPSC_derived_neural-crest-cell GSE108506.CHD7.hiPSC_derived_neural-crest-cell 221 bp overlap
CTCF 4 datasets
ChIP RH4 GSE83726.CTCF.RH4 185 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 145 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 178 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 166 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 225 bp overlap
E2F6 1 dataset
Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap
ELF1 1 dataset
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 273 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 198 bp overlap
ERG 1 dataset
ChIP SEM GSE117864.ERG.SEM 226 bp overlap
ETS1 3 datasets
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 285 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.ETS1.CTV-1_DSG_SPI1-mut 303 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 127 bp overlap
EZH2 1 dataset
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 303 bp overlap
FEZF1 1 dataset
ChIP HEK293 GSE76494.FEZF1.HEK293 141 bp overlap
FLI1 12 datasets
ChIP A-673 GSE99959.FLI1.A-673 303 bp overlap
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 303 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 303 bp overlap
ChIP A-673_D10 GSE129155.FLI1.A-673_D10 219 bp overlap
ChIP A-673_D11 GSE129155.FLI1.A-673_D11 301 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 303 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 303 bp overlap
ChIP A-673_D7 GSE129155.FLI1.A-673_D7 254 bp overlap
ChIP A-673_D9 GSE129155.FLI1.A-673_D9 267 bp overlap
ChIP CTV-1_DSG GSE128835.FLI1.CTV-1_DSG 253 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.FLI1.CTV-1_DSG_SPI1-mut 303 bp overlap
ChIP SK-N-MC GSE61944.FLI1.SK-N-MC 303 bp overlap
FOSL2 1 dataset
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 186 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 143 bp overlap
FOXP2 1 dataset
ChIP SK-N-MC ENCFF865YOS 285 bp overlap
GATA3 1 dataset
ChIP Jurkat GSE76181.GATA3.Jurkat 209 bp overlap
GATA6 6 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 274 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 204 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 303 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 147 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 303 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 303 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 303 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 303 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 303 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 193 bp overlap
HDAC2 2 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 237 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 303 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 303 bp overlap
HSF1 1 dataset
ChIP MO91 GSE45852.HSF1.MO91 195 bp overlap
IKZF1 3 datasets
ChIP BCR-ABL1 GSE58825.IKZF1.BCR-ABL1 259 bp overlap
ChIP BCR-ABL1_LAX2 GSE58825.IKZF1.BCR-ABL1_LAX2 241 bp overlap
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 303 bp overlap
IKZF3 1 dataset
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 303 bp overlap
JUN 4 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 303 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 291 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 301 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 293 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 119 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 98 bp overlap
KMT2A 2 datasets
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 239 bp overlap
ChIP L826 GSE83671.KMT2A.L826 255 bp overlap
KMT2B 1 dataset
ChIP AML_OG86 GSE112074.KMT2B.AML_OG86 190 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 264 bp overlap
MED1 3 datasets
ChIP MOLM-14_DHE GSE124963.MED1.MOLM-14_DHE 248 bp overlap
ChIP MOLM-14_Veh GSE124963.MED1.MOLM-14_Veh 193 bp overlap
ChIP RH4 GSE83726.MED1.RH4 303 bp overlap
MEIS1 1 dataset
ChIP A-673 GSE109477.MEIS1.A-673 173 bp overlap
MITF 1 dataset
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 205 bp overlap
MTA2 2 datasets
ChIP RH4 GSE155861.MTA2.RH4 303 bp overlap
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 303 bp overlap
MYB 5 datasets
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
ChIP Jurkat GSE59657.MYB.Jurkat 258 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 255 bp overlap
ChIP THP-1 GSE90769.MYB.THP-1 228 bp overlap
ChIP THP-1_OG86 GSE90769.MYB.THP-1_OG86 185 bp overlap
MYCN 2 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 239 bp overlap
ChIP RH4 GSE83726.MYCN.RH4 303 bp overlap
MYF5 1 dataset
ChIP Rh18 GSE84628.MYF5.Rh18 255 bp overlap
MYOD1 7 datasets
ChIP RD GSE137168.MYOD1.RD 303 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 303 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 303 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 303 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 288 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 285 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 234 bp overlap
MYOG 2 datasets
ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 232 bp overlap
ChIP RH4_DMSO-6H GSE116344.MYOG.RH4_DMSO-6H 176 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 303 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 298 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 303 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 292 bp overlap
NEUROG2 4 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 200 bp overlap
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 238 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 194 bp overlap
ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 239 bp overlap
NOTCH1 1 dataset
ChIP CUTLL1 GSE29600.NOTCH1.CUTLL1 83 bp overlap
NR3C1 1 dataset
ChIP SUP-B15_DEX GSE107584.NR3C1.SUP-B15_DEX 191 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 168 bp overlap
PAX5 1 dataset
ChIP fetal_testis GSE100639.PAX5.fetal_testis 55 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 303 bp overlap
POLR2A 1 dataset
ChIP SK-N-MC ENCFF088IVG 244 bp overlap
POU2F2 1 dataset
ChIP pre-B-cell GSE107886.POU2F2.pre-B-cell 154 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 296 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 303 bp overlap
RAD21 1 dataset
ChIP RH4 GSE83726.RAD21.RH4 283 bp overlap
RBBP4 2 datasets
ChIP RH5 GSE155861.RBBP4.RH5 214 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 303 bp overlap
RBPJ 3 datasets
ChIP GSC8-11 GSE74557.RBPJ.GSC8-11 206 bp overlap
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 265 bp overlap
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 303 bp overlap
RNF2 2 datasets
ChIP WA09 GSE105028.RNF2.WA09 227 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 222 bp overlap
RUNX1 3 datasets
ChIP 697 GSE138031.RUNX1.697 194 bp overlap
ChIP BCP-ALL_patient1 GSE109377.RUNX1.BCP-ALL_patient1 209 bp overlap
ChIP NALM-6 GSE126300.RUNX1.NALM-6 266 bp overlap
Rarb 1 dataset
Motif DE_12h DE_12h-Rarb_MA0858.1 17 bp overlap
SFMBT1 1 dataset
ChIP HeLa GSE45441.SFMBT1.HeLa 210 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000BIS.SIN3A.WA01 107 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 296 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 264 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 303 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 303 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 274 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 263 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 303 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 254 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 251 bp overlap
SMAD3 4 datasets
ChIP BG03 GSE21614.SMAD3.BG03 204 bp overlap
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 227 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 236 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 154 bp overlap
SMAD4 1 dataset
ChIP hESC GSE29422.SMAD4.hESC 152 bp overlap
SMARCA2 2 datasets
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 303 bp overlap
ChIP SK-N-MC_shEWSFLI1 GSE94275.SMARCA2.SK-N-MC_shEWSFLI1 303 bp overlap
SMARCA4 7 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 303 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 291 bp overlap
ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 257 bp overlap
ChIP CTV-1_delA GSE128835.SMARCA4.CTV-1_delA 270 bp overlap
ChIP CTV-1_delQ GSE128835.SMARCA4.CTV-1_delQ 179 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 214 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 265 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 303 bp overlap
SMARCC1 6 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 241 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 280 bp overlap
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 303 bp overlap
ChIP SK-N-MC_shGFP GSE94275.SMARCC1.SK-N-MC_shGFP 220 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 218 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 267 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 145 bp overlap
SOX2 1 dataset
ChIP RENVM GSE49404.SOX2.RENVM 152 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 218 bp overlap
SP1 2 datasets
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
ChIP WTC11 ENCFF688PEU 303 bp overlap
SP2 1 dataset
Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SPI1 2 datasets
ChIP CTV-1_delA GSE128835.SPI1.CTV-1_delA 197 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 270 bp overlap
STAT3 1 dataset
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 223 bp overlap
Stat6 1 dataset
Motif DE_12h DE_12h-Stat6_MA0520.2 10 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 260 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 286 bp overlap
TAL1 3 datasets
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 278 bp overlap
ChIP PRIMA2 GSE33850.TAL1.PRIMA2 173 bp overlap
ChIP PRIMA5 GSE33850.TAL1.PRIMA5 175 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 176 bp overlap
TCF3 2 datasets
ChIP NPC GSE154479.TCF3.NPC 264 bp overlap
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 303 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 303 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 81 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 292 bp overlap
TP63 2 datasets
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 286 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 173 bp overlap
TRIM24 1 dataset
ChIP MOLM-13_IACS-9571 GSE100571.TRIM24.MOLM-13_IACS-9571 170 bp overlap
TRIM28 2 datasets
ChIP AF22 GSE84259.TRIM28.AF22 103 bp overlap
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 64 bp overlap
YY1 2 datasets
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 182 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 159 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 303 bp overlap
ZNF143 1 dataset
ChIP WA01 ENCSR000EBW.ZNF143.WA01 114 bp overlap
ZNF184 2 datasets
ChIP WTC11 ENCFF352POG 303 bp overlap
ChIP WTC11 ENCFF352POG 215 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 141 bp overlap
ZNF317 1 dataset
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
ZNF398 2 datasets
ChIP BG01V GSE133630.ZNF398.BG01V 136 bp overlap
ChIP H9 GSE133630.ZNF398.H9 168 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 294 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 134 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 270 bp overlap
ZNF512 1 dataset
ChIP WTC11 ENCFF086TTM 55 bp overlap
ZNF512B 2 datasets
ChIP MCF-7 ENCSR761LRR.ZNF512B.MCF-7 81 bp overlap
ChIP MCF-7 ENCSR555DCF.ZNF512B.MCF-7 145 bp overlap
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