chr5 : 41,418,601 41,419,070
469 bp 115 TFs 0 linked genes
This 469 bp open chromatin element has no linked target genes and is bound by 115 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:41,413,601 – 41,424,070
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
115 transcription factors
Source
Cell type
AR 4 datasets
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 238 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 171 bp overlap
ChIP fibroblast_prostate-cancer_PCDF2 GSE126852.AR.fibroblast_prostate-cancer_PCDF2 207 bp overlap
ChIP myofibroblast GSE90772.AR.myofibroblast 333 bp overlap
BHLHE22 2 datasets
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
Motif ES_0h ES_0h-BHLHE22_MA1635.2 6 bp overlap
BNC2 2 datasets
ChIP SK-N-SH ENCFF174EMC 425 bp overlap
ChIP SK-N-SH ENCFF174EMC 156 bp overlap
BRD2 5 datasets
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 382 bp overlap
ChIP SUM149PT_R_DMSO GSE131097.BRD2.SUM149PT_R_DMSO 322 bp overlap
ChIP SUM149PT_R_JQ1 GSE131097.BRD2.SUM149PT_R_JQ1 272 bp overlap
ChIP SUM159PT_DMSO GSE131097.BRD2.SUM159PT_DMSO 469 bp overlap
ChIP SUM159PT_R_JQ1 GSE131097.BRD2.SUM159PT_R_JQ1 347 bp overlap
BRD4 14 datasets
ChIP HCC1395 GSE63581.BRD4.HCC1395 370 bp overlap
ChIP HCC1806_300nMJQ1_24h GSE87418.BRD4.HCC1806_300nMJQ1_24h 211 bp overlap
ChIP HeLa GSE151038.BRD4.HeLa 389 bp overlap
ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 377 bp overlap
ChIP MDA-MB-231_JQ1-neg_S_3f GSE136151.BRD4.MDA-MB-231_JQ1-neg_S_3f 266 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 83 bp overlap
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 119 bp overlap
ChIP SUM159PT_300nMJQ1_24h GSE87418.BRD4.SUM159PT_300nMJQ1_24h 211 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 323 bp overlap
ChIP SUM159PT_DMSO GSE131097.BRD4.SUM159PT_DMSO 366 bp overlap
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 237 bp overlap
ChIP SUM159PT_KO GSE131097.BRD4.SUM159PT_KO 469 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 469 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
BRD7 2 datasets
ChIP SUM159PT_DMSO GSE131097.BRD7.SUM159PT_DMSO 276 bp overlap
ChIP SUM159PT_JQ1 GSE131097.BRD7.SUM159PT_JQ1 311 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 115 bp overlap
CEBPB 1 dataset
ChIP HeLa-S3 ENCFF722WEG 265 bp overlap
CHD2 1 dataset
ChIP HeLa-S3 ENCSR000ECP.CHD2.HeLa-S3 124 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 303 bp overlap
CREB1 1 dataset
ChIP A-549 ENCSR000BRB.CREB1.A-549 119 bp overlap
CRY1 2 datasets
ChIP U2OS GSE130602.CRY1.U2OS 279 bp overlap
ChIP U2OS_DMSO GSE130506.CRY1.U2OS_DMSO 278 bp overlap
CRY2 1 dataset
ChIP U2OS GSE130602.CRY2.U2OS 258 bp overlap
DAXX 2 datasets
ChIP PC-3 GSE68647.DAXX.PC-3 314 bp overlap
ChIP PC-3_DAXX GSE68647.DAXX.PC-3_DAXX 201 bp overlap
DMRTA1 2 datasets
Motif DE_12h DE_12h-DMRTA1_MA1707.2 10 bp overlap
Motif ES_0h ES_0h-DMRTA1_MA1707.2 10 bp overlap
DMRTA2 2 datasets
Motif DE_12h DE_12h-DMRTA2_MA1478.2 6 bp overlap
Motif ES_0h ES_0h-DMRTA2_MA1478.2 6 bp overlap
Dmrt1 2 datasets
Motif DE_12h DE_12h-Dmrt1_MA1603.2 9 bp overlap
Motif ES_0h ES_0h-Dmrt1_MA1603.2 9 bp overlap
ELF3 1 dataset
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
EP300 6 datasets
ChIP A-549 ENCSR000BPW.EP300.A-549 232 bp overlap
ChIP HeLa-S3 ENCFF089VPQ 325 bp overlap
ChIP HeLa-S3 ENCSR000ECV.EP300.HeLa-S3 186 bp overlap
ChIP SK-N-SH ENCFF451CNG 354 bp overlap
ChIP SK-N-SH ENCSR000BUA.EP300.SK-N-SH 263 bp overlap
ChIP fibroblast_proliferating GSE106146.EP300.fibroblast_proliferating 204 bp overlap
ERF::NHLH1 2 datasets
Motif DE_12h DE_12h-ERFNHLH1_MA1938.2 16 bp overlap
Motif ES_0h ES_0h-ERFNHLH1_MA1938.2 16 bp overlap
ERG 1 dataset
ChIP RWPE-1 GSE114241.ERG.RWPE-1 419 bp overlap
ESR1 1 dataset
ChIP MCF-7_ethanol_MKL1D200 GSE107476.ESR1.MCF-7_ethanol_MKL1D200 185 bp overlap
ESRRA 1 dataset
ChIP A-549 ENCSR473SUA.ESRRA.A-549 128 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 338 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
FEZF2 2 datasets
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
Motif ES_0h ES_0h-FEZF2_MA2341.1 8 bp overlap
FOSL2 1 dataset
ChIP SK-N-SH ENCSR000BVB.FOSL2.SK-N-SH 182 bp overlap
FOXA2 2 datasets
ChIP BJ1-hTERT_CDT1 GSE92491.FOXA2.BJ1-hTERT_CDT1 152 bp overlap
ChIP PC-3_Veh GSE148982.FOXA2.PC-3_Veh 252 bp overlap
FOXM1 1 dataset
ChIP SK-N-SH ENCSR000BTB.FOXM1.SK-N-SH 166 bp overlap
GATA2 1 dataset
ChIP ESF GSE108408.GATA2.ESF 227 bp overlap
GATA3 2 datasets
ChIP A-549 ENCSR000BTI.GATA3.A-549 212 bp overlap
ChIP SK-N-SH ENCFF040SSB 134 bp overlap
GRHL2 1 dataset
ChIP PEO1 GSE71018.GRHL2.PEO1 114 bp overlap
Gli1 2 datasets
Motif DE_12h DE_12h-Gli1_MA1990.2 10 bp overlap
Motif ES_0h ES_0h-Gli1_MA1990.2 10 bp overlap
Gli2 2 datasets
Motif DE_12h DE_12h-Gli2_MA0734.4 9 bp overlap
Motif ES_0h ES_0h-Gli2_MA0734.4 9 bp overlap
HIF1A 1 dataset
ChIP U2OS_DMOG GSE85096.HIF1A.U2OS_DMOG 175 bp overlap
HNF4A 1 dataset
ChIP gastric-epithelial-cell_OE GSE114018.HNF4A.gastric-epithelial-cell_OE 246 bp overlap
HOXC13 2 datasets
Motif DE_12h DE_12h-HOXC13_MA0907.2 9 bp overlap
Motif ES_0h ES_0h-HOXC13_MA0907.2 9 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
ISL1 1 dataset
ChIP SK-N-SH ENCFF285GEQ 458 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
JUN 1 dataset
ChIP HeLa-S3 ENCSR000EDG.JUN.HeLa-S3 181 bp overlap
JUND 3 datasets
ChIP HeLa-S3 ENCFF642OHL 321 bp overlap
ChIP HeLa-S3 ENCSR000EDH.JUND.HeLa-S3 271 bp overlap
ChIP SK-N-SH ENCSR000BSK.JUND.SK-N-SH 145 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 190 bp overlap
MAX 1 dataset
ChIP A549 ENCFF310XGQ 392 bp overlap
MED1 1 dataset
ChIP hMSC-TERT4_osteoblast-4H GSE113253.MED1.hMSC-TERT4_osteoblast-4H 242 bp overlap
MED25 1 dataset
ChIP PC-3_FLAG GSE133445.MED25.PC-3_FLAG 398 bp overlap
MYCN 2 datasets
ChIP SHEP-21N GSE80151.MYCN.SHEP-21N 207 bp overlap
ChIP SHEP-21N_24h GSE80151.MYCN.SHEP-21N_24h 170 bp overlap
MYOD1 1 dataset
ChIP myoblast GSE50413.MYOD1.myoblast 154 bp overlap
MYOG 2 datasets
Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap
Motif ES_0h ES_0h-MYOG_MA0500.3 8 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 183 bp overlap
NELFE 1 dataset
ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 279 bp overlap
NFATC3 2 datasets
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
Motif ES_0h ES_0h-NFATC3_MA0625.3 6 bp overlap
NHLH1 2 datasets
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
Motif ES_0h ES_0h-NHLH1_MA0048.3 9 bp overlap
NR1D1 1 dataset
Motif DE_12h DE_12h-NR1D1_MA1531.2 14 bp overlap
NR3C1 2 datasets
ChIP A-549 ENCSR000BHF.NR3C1.A-549 158 bp overlap
ChIP IMR-90 ERP007093.NR3C1.IMR-90 201 bp overlap
NR5A2 2 datasets
ChIP A-549 ENCSR190GIW.NR5A2.A-549 321 bp overlap
ChIP A549 ENCFF834RVE 367 bp overlap
NRF1 1 dataset
ChIP HeLa-S3 GSE108856.NRF1.HeLa-S3 144 bp overlap
Neurod2 2 datasets
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Motif ES_0h ES_0h-Neurod2_MA1993.2 6 bp overlap
Nfat5 2 datasets
Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap
Motif ES_0h ES_0h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 2 datasets
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Motif ES_0h ES_0h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 2 datasets
Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap
Motif ES_0h ES_0h-Nfatc2_MA0152.3 8 bp overlap
Olig2 2 datasets
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
Motif ES_0h ES_0h-Olig2_MA1997.2 6 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 317 bp overlap
PGR 1 dataset
ChIP AB32 GSE31129.PGR.AB32 267 bp overlap
PKNOX1 2 datasets
Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap
Motif ES_0h ES_0h-PKNOX1_MA0782.3 10 bp overlap
POU2F1::SOX2 2 datasets
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU4F1 2 datasets
Motif DE_12h DE_12h-POU4F1_MA0790.2 12 bp overlap
Motif ES_0h ES_0h-POU4F1_MA0790.2 12 bp overlap
POU4F3 2 datasets
Motif DE_12h DE_12h-POU4F3_MA0791.2 12 bp overlap
Motif ES_0h ES_0h-POU4F3_MA0791.2 12 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 320 bp overlap
ChIP OSK GSE81899.POU5F1.OSK 184 bp overlap
PRDM1 2 datasets
ChIP HeLa-S3 ENCFF893HDJ 265 bp overlap
ChIP HeLa-S3 ENCSR000ECY.PRDM1.HeLa-S3 236 bp overlap
Plagl1 1 dataset
Motif DE_12h DE_12h-Plagl1_MA1615.2 8 bp overlap
RARA::RXRG 2 datasets
Motif DE_12h DE_12h-RARARXRG_MA1149.2 17 bp overlap
Motif ES_0h ES_0h-RARARXRG_MA1149.2 17 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 304 bp overlap
RUVBL2 1 dataset
ChIP U2OS GSE130602.RUVBL2.U2OS 233 bp overlap
RXRA 1 dataset
ChIP SK-N-SH ENCSR000BVG.RXRA.SK-N-SH 147 bp overlap
Rarb 2 datasets
Motif DE_12h DE_12h-Rarb_MA0858.1 17 bp overlap
Motif ES_0h ES_0h-Rarb_MA0858.1 17 bp overlap
Runx1 1 dataset
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
SMAD3 2 datasets
ChIP LX2_CALCIPOTRIOL_TGFB1 GSE38103.SMAD3.LX2_CALCIPOTRIOL_TGFB1 275 bp overlap
ChIP PC-3_hypoxia GSE106305.SMAD3.PC-3_hypoxia 268 bp overlap
SMARCA4 5 datasets
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 398 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 469 bp overlap
ChIP A-549_AG15686 GSE132290.SMARCA4.A-549_AG15686 291 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCA4.TTC-1240_SMARCB1-FL 189 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 227 bp overlap
SMARCB1 2 datasets
ChIP proliferating-human-fibroblast_ASO_Ctrl GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_Ctrl 408 bp overlap
ChIP proliferating-human-fibroblast_ASO_LINC GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_LINC 416 bp overlap
SOX14 2 datasets
Motif DE_12h DE_12h-SOX14_MA1562.2 9 bp overlap
Motif ES_0h ES_0h-SOX14_MA1562.2 9 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 321 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 243 bp overlap
SOX8 2 datasets
Motif DE_12h DE_12h-SOX8_MA0868.3 7 bp overlap
Motif ES_0h ES_0h-SOX8_MA0868.3 7 bp overlap
SP1 1 dataset
ChIP A-549 ENCSR000BPE.SP1.A-549 197 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_L169A GSE139053.SS18-SSX.fibroblast_L169A 312 bp overlap
STAT1::STAT2 2 datasets
Motif DE_12h DE_12h-STAT1STAT2_MA0517.2 13 bp overlap
Motif ES_0h ES_0h-STAT1STAT2_MA0517.2 13 bp overlap
STAT3 3 datasets
ChIP HeLa-S3 ENCSR000EDC.STAT3.HeLa-S3 163 bp overlap
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 140 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 124 bp overlap
Sox11 2 datasets
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
Motif ES_0h ES_0h-Sox11_MA0869.3 8 bp overlap
Sox17 2 datasets
Motif DE_12h DE_12h-Sox17_MA0078.3 10 bp overlap
Motif ES_0h ES_0h-Sox17_MA0078.3 10 bp overlap
Sox5 2 datasets
Motif DE_12h DE_12h-Sox5_MA0087.3 8 bp overlap
Motif ES_0h ES_0h-Sox5_MA0087.3 8 bp overlap
Sox7 2 datasets
Motif DE_12h DE_12h-Sox7_MA2095.1 10 bp overlap
Motif ES_0h ES_0h-Sox7_MA2095.1 10 bp overlap
TCF12 2 datasets
ChIP A-549 ENCSR000BQQ.TCF12.A-549 212 bp overlap
ChIP SK-N-SH ENCFF147AHB 163 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 231 bp overlap
TEAD1 1 dataset
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
TEAD3 1 dataset
Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap
TEAD4 4 datasets
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
ChIP H1 ENCFF778PAX 234 bp overlap
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 311 bp overlap
ChIP SK-N-SH ENCSR000BUQ.TEAD4.SK-N-SH 146 bp overlap
TFAP4::FLI1 2 datasets
Motif DE_12h DE_12h-TFAP4FLI1_MA1967.2 14 bp overlap
Motif ES_0h ES_0h-TFAP4FLI1_MA1967.2 14 bp overlap
TWIST1 4 datasets
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 303 bp overlap
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 263 bp overlap
ChIP SHEP-21N_24h GSE80151.TWIST1.SHEP-21N_24h 315 bp overlap
ChIP SHEP-21N_DOX_0H GSE80151.TWIST1.SHEP-21N_DOX_0H 263 bp overlap
Tcf12 2 datasets
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Motif ES_0h ES_0h-Tcf12_MA0521.3 6 bp overlap
Twist2 2 datasets
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
Motif ES_0h ES_0h-Twist2_MA0633.3 6 bp overlap
UBN1 1 dataset
ChIP HeLa GSE45024.UBN1.HeLa 177 bp overlap
VDR 1 dataset
ChIP LX2_CALCIPOTRIOL_TGFB1 GSE38103.VDR.LX2_CALCIPOTRIOL_TGFB1 270 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 288 bp overlap
ZNF175 1 dataset
Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap
ZNF205 1 dataset
ChIP HEK293T GSE78099.ZNF205.HEK293T 376 bp overlap
ZNF331 2 datasets
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
Motif ES_0h ES_0h-ZNF331_MA1726.2 10 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 247 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 186 bp overlap
ZNF768 2 datasets
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
Motif ES_0h ES_0h-ZNF768_MA1731.2 9 bp overlap
ZNF92 1 dataset
ChIP retina_pigment GSE60024.ZNF92.retina_pigment 210 bp overlap
Zfp335 2 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap
Zic1::Zic2 2 datasets
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif ES_0h ES_0h-Zic1Zic2_MA1628.2 7 bp overlap
Zic3 2 datasets
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif ES_0h ES_0h-Zic3_MA0697.3 7 bp overlap