chr4 : 159,105,147 159,105,452
305 bp 98 TFs 1 linked gene
This 305 bp open chromatin element is linked to RAPGEF2 and is bound by 98 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
RAPGEF2 2.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:159,100,147 – 159,110,452
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
98 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 74 bp overlap
ARID2 3 datasets
ChIP BIN-67_ctrl GSE117734.ARID2.BIN-67_ctrl 50 bp overlap
ChIP BIN-67_ctrl GSE117734.ARID2.BIN-67_ctrl 133 bp overlap
ChIP Hep-G2 GSE69566.ARID2.Hep-G2 305 bp overlap
ASCL1 1 dataset
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 109 bp overlap
ASH2L 2 datasets
ChIP GM12878 ENCSR849WCQ.ASH2L.GM12878 250 bp overlap
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 94 bp overlap
ATF3 1 dataset
ChIP K-562 ENCSR028UIU.ATF3.K-562 149 bp overlap
BCOR 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 305 bp overlap
BRD4 4 datasets
ChIP CLL_patient1 GSE109411.BRD4.CLL_patient1 114 bp overlap
ChIP CLL_patient3 GSE109411.BRD4.CLL_patient3 219 bp overlap
ChIP SUM159PT_KO GSE131097.BRD4.SUM159PT_KO 140 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 305 bp overlap
CBFB 1 dataset
ChIP Hep-G2 ENCSR479RZV.CBFB.Hep-G2 166 bp overlap
CEBPA 2 datasets
ChIP THP-1_1-25D_8h GSE124032.CEBPA.THP-1_1-25D_8h 69 bp overlap
ChIP THP-1_EtOH_2h GSE124032.CEBPA.THP-1_EtOH_2h 131 bp overlap
CEBPB 7 datasets
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 128 bp overlap
ChIP K-562 ENCSR000EHE.CEBPB.K-562 91 bp overlap
ChIP K-562 ENCSR000BRQ.CEBPB.K-562 151 bp overlap
ChIP K562 ENCFF584CTB 101 bp overlap
ChIP K562 ENCFF584CTB 114 bp overlap
ChIP THP-1_NS1-Pam3csk-4h GSE103477.CEBPB.THP-1_NS1-Pam3csk-4h 59 bp overlap
ChIP THP-1_eGFP-Pam3csk-4h GSE103477.CEBPB.THP-1_eGFP-Pam3csk-4h 60 bp overlap
CEBPG 4 datasets
ChIP K-562 ENCSR490LWA.CEBPG.K-562 219 bp overlap
ChIP K562 ENCFF783ADE 95 bp overlap
ChIP K562 ENCFF783ADE 295 bp overlap
ChIP MCF-7 ENCFF155HZI 116 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 197 bp overlap
CREB1 1 dataset
ChIP HepG2 ENCFF576ERP 66 bp overlap
CREM 1 dataset
ChIP HepG2 ENCFF049UDY 167 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 244 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 217 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 296 bp overlap
CTCF 30 datasets
ChIP LNCAP ENCFF700QXT 59 bp overlap
ChIP Loucy ENCFF359TVQ 83 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 61 bp overlap
ChIP Peyer's patch ENCFF701KWW 87 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 180 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 305 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 108 bp overlap
ChIP aorta_thoracic ENCSR668BTN.CTCF.aorta_thoracic 67 bp overlap
ChIP chondrocyte ENCFF134ORZ 303 bp overlap
ChIP colon_transverse ENCSR833FWC.CTCF.colon_transverse 79 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF277CZQ 123 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF628TCI 73 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF628TCI 275 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF756TDJ 63 bp overlap
ChIP erythroblast_adult_erythroblasts GSE102184.CTCF.erythroblast_adult_erythroblasts 73 bp overlap
ChIP heart right ventricle ENCFF022KFI 53 bp overlap
ChIP heart_left-ventricle ENCSR544APK.CTCF.heart_left-ventricle 52 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 83 bp overlap
ChIP left ventricle myocardium inferior ENCFF161DPW 90 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 81 bp overlap
ChIP nephron ENCFF589HXU 93 bp overlap
ChIP neural cell ENCFF335ADI 64 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 233 bp overlap
ChIP spleen ENCFF077XIZ 121 bp overlap
ChIP stomach ENCFF370OWL 102 bp overlap
ChIP thoracic aorta ENCFF012WJQ 59 bp overlap
ChIP thoracic aorta ENCFF166PKA 82 bp overlap
ChIP thyroid gland ENCFF204HWS 108 bp overlap
ChIP transverse colon ENCFF594PFO 63 bp overlap
ChIP upper lobe of right lung ENCFF065JCM 266 bp overlap
Cebpa 6 datasets
ChIP BLaER1 ENCFF093OYK 305 bp overlap
ChIP BLaER1 ENCFF399AYC 58 bp overlap
ChIP BLaER1 ENCFF419EBE 111 bp overlap
ChIP BLaER1 ENCFF798NMV 74 bp overlap
ChIP BLaER1 ENCFF858JKM 83 bp overlap
ChIP BLaER1 ENCFF952XLX 66 bp overlap
DAXX 1 dataset
ChIP PC-3 GSE68647.DAXX.PC-3 68 bp overlap
DRAP1 1 dataset
ChIP Hep-G2 ENCSR765MKZ.DRAP1.Hep-G2 141 bp overlap
E2F8 1 dataset
ChIP HepG2 ENCFF117UYU 107 bp overlap
ELF3 1 dataset
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 112 bp overlap
ESRRA 3 datasets
ChIP BT-474 GSE81651.ESRRA.BT-474 149 bp overlap
ChIP BT-474_EGF GSE81651.ESRRA.BT-474_EGF 75 bp overlap
ChIP BT-474_HRG GSE81651.ESRRA.BT-474_HRG 93 bp overlap
FOS 5 datasets
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 302 bp overlap
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 123 bp overlap
ChIP endothelial cell of umbilical vein ENCFF415XBG 220 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVU.FOS.endothelial_umbilical-vein 178 bp overlap
ChIP myometrium_PT967 GSE128230.FOS.myometrium_PT967 64 bp overlap
FOXA1 4 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 122 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 57 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 221 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 305 bp overlap
FOXA2 4 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 80 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 124 bp overlap
ChIP DE DE-FOXA2-1 125 bp overlap
ChIP DE DE-FOXA2-2 151 bp overlap
FOXJ3 3 datasets
ChIP Hep-G2 ENCSR413AJG.FOXJ3.Hep-G2 51 bp overlap
ChIP HepG2 ENCFF430OSX 88 bp overlap
ChIP HepG2 ENCFF430OSX 305 bp overlap
FOXP1 1 dataset
ChIP HepG2 ENCFF823ERM 53 bp overlap
FOXP4 1 dataset
ChIP HepG2 ENCFF462ULY 63 bp overlap
GABPB1 1 dataset
ChIP K562 ENCFF015GDS 63 bp overlap
GATA1 1 dataset
ChIP erythroblast ENCFF867JAR 160 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 64 bp overlap
ChIP DE DE-GATA4-2 85 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 121 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 62 bp overlap
ChIP DE DE-GATA6-2 100 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 123 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 55 bp overlap
HDAC1 3 datasets
ChIP HepG2 ENCFF750ZWM 69 bp overlap
ChIP HepG2 ENCFF750ZWM 271 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 122 bp overlap
HDAC2 1 dataset
ChIP HepG2 ENCFF990GUQ 65 bp overlap
HNF1A 1 dataset
ChIP HepG2 ENCFF352VYI 77 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 142 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 87 bp overlap
IKZF2 1 dataset
ChIP GM12878 ENCFF238LYK 258 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 292 bp overlap
JUN 4 datasets
ChIP HAEC_IL1b_4h GSE89970.JUN.HAEC_IL1b_4h 180 bp overlap
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 112 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 305 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUN.MCF10A-Er-Src_EtOH 64 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 305 bp overlap
KMT2A 8 datasets
ChIP HEK293T_C-term GSE90762.KMT2A.HEK293T_C-term 193 bp overlap
ChIP HEK293T_N-term GSE90762.KMT2A.HEK293T_N-term 185 bp overlap
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 305 bp overlap
ChIP HEK293T_N-term_C49 GSE90762.KMT2A.HEK293T_N-term_C49 305 bp overlap
ChIP HEK293T_N-term_shCtrl GSE90762.KMT2A.HEK293T_N-term_shCtrl 305 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 305 bp overlap
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 180 bp overlap
ChIP IMS-M2_DMSO GSE129636.KMT2A.IMS-M2_DMSO 75 bp overlap
MAX 1 dataset
ChIP HepG2 ENCFF507HCX 93 bp overlap
MED1 3 datasets
ChIP G296S GSE85628.MED1.G296S 302 bp overlap
ChIP G296S_2 GSE85628.MED1.G296S_2 302 bp overlap
ChIP G296S_4 GSE85628.MED1.G296S_4 305 bp overlap
MEF2D 1 dataset
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 239 bp overlap
MIXL1 1 dataset
ChIP HepG2 ENCFF817YFO 57 bp overlap
MLLT1 1 dataset
ChIP K-562 ENCSR107GRP.MLLT1.K-562 192 bp overlap
MNT 1 dataset
ChIP K562 ENCFF820IGH 95 bp overlap
MYBL2 2 datasets
ChIP Hep-G2 ENCSR581KCO.MYBL2.Hep-G2 136 bp overlap
ChIP HepG2 ENCFF650QJC 138 bp overlap
NEUROD1 3 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 253 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 305 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 165 bp overlap
NFIC 1 dataset
ChIP HepG2 ENCFF169TKU 57 bp overlap
NONO 1 dataset
ChIP HepG2 ENCFF361UQH 138 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 265 bp overlap
PHF21A 1 dataset
ChIP HepG2 ENCFF525EUW 156 bp overlap
PHF8 2 datasets
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 133 bp overlap
ChIP HepG2 ENCFF065NWR 150 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 305 bp overlap
PPARG 1 dataset
ChIP Hep-G2 ENCSR130VQL.PPARG.Hep-G2 215 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 274 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 146 bp overlap
RAD21 2 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 59 bp overlap
ChIP lymphoblast GSE155324.RAD21.lymphoblast 66 bp overlap
RELA 4 datasets
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 172 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 74 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 138 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 111 bp overlap
REST 2 datasets
ChIP neural cell ENCFF882LXX 71 bp overlap
ChIP neural cell ENCFF882LXX 305 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 305 bp overlap
RXRA 1 dataset
ChIP liver ENCFF077DAP 56 bp overlap
SMAD3 3 datasets
ChIP Hep-G2 ENCSR005GZH.SMAD3.Hep-G2 83 bp overlap
ChIP HepG2 ENCFF309PKF 103 bp overlap
ChIP HepG2 ENCFF309PKF 303 bp overlap
SMARCA4 4 datasets
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 101 bp overlap
ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 62 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 147 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 175 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 283 bp overlap
SREBP2 1 dataset
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 107 bp overlap
SS18 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 71 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SS18.BIN-67_lentivirus-SMARCA4-K785R 305 bp overlap
TCF7L2 1 dataset
ChIP HepG2 ENCFF510OLG 98 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 164 bp overlap
TRPS1 1 dataset
ChIP MCF-7 GSE133072.TRPS1.MCF-7 60 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 305 bp overlap
ZEB2 1 dataset
ChIP K-562 ENCSR004GKA.ZEB2.K-562 56 bp overlap
ZFHX3 1 dataset
ChIP HepG2 ENCFF082SJV 134 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 172 bp overlap
ZGPAT 2 datasets
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 197 bp overlap
ChIP HepG2 ENCFF055YSO 118 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 70 bp overlap
ZNF264 1 dataset
ChIP HepG2 ENCFF453WJV 57 bp overlap
ZNF331 1 dataset
ChIP HepG2 ENCFF842SZN 63 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 252 bp overlap
ZNF660 1 dataset
ChIP HEK293 ENCFF282RUS 50 bp overlap
ZNF780A 1 dataset
ChIP HepG2 ENCFF394QDQ 116 bp overlap
ZSCAN22 1 dataset
ChIP HEK293 GSE76494.ZSCAN22.HEK293 177 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 111 bp overlap